Wall clock time and date at job start Tue Mar 31 2020 06:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30798 * 1 3 3 Si 1.86802 * 119.99733 * 2 1 4 4 H 1.48507 * 109.46678 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47091 * 299.99768 * 3 2 1 6 6 H 1.48497 * 109.47385 * 59.99896 * 3 2 1 7 7 C 1.40043 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00275 * 197.23718 * 7 2 1 9 9 C 1.40689 * 119.99899 * 17.23803 * 7 2 1 10 10 C 1.40934 * 120.59353 * 24.84239 * 9 7 2 11 11 C 1.36208 * 119.98354 * 180.27986 * 10 9 7 12 12 C 1.39122 * 121.29831 * 359.71080 * 11 10 9 13 13 F 1.35098 * 119.38467 * 180.02562 * 12 11 10 14 14 C 1.38151 * 121.23341 * 0.02562 * 12 11 10 15 15 C 1.39417 * 119.90246 * 359.97438 * 14 12 11 16 16 C 1.47455 * 120.61685 * 180.02562 * 15 14 12 17 17 C 1.39033 * 120.70054 * 65.00016 * 16 15 14 18 18 C 1.38735 * 120.56837 * 179.97438 * 17 16 15 19 19 C 1.36204 * 121.84691 * 0.03887 * 18 17 16 20 20 C 1.40501 * 120.66827 * 0.02562 * 19 18 17 21 21 C 1.40559 * 121.32949 * 179.97438 * 20 19 18 22 22 C 1.36186 * 119.62846 * 180.02562 * 21 20 19 23 23 C 1.39253 * 121.00107 * 0.02606 * 22 21 20 24 24 C 1.36371 * 120.90918 * 359.97438 * 23 22 21 25 25 C 1.39968 * 119.61745 * 359.66882 * 24 23 22 26 26 H 0.97001 * 120.00519 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.00667 * 359.97423 * 10 9 7 28 28 H 1.07998 * 119.35334 * 179.69517 * 11 10 9 29 29 H 1.08004 * 120.05228 * 180.02562 * 14 12 11 30 30 H 1.07992 * 119.71563 * 0.02562 * 17 16 15 31 31 H 1.08006 * 119.07926 * 180.02562 * 18 17 16 32 32 H 1.08001 * 119.66783 * 179.97438 * 19 18 17 33 33 H 1.08001 * 120.18570 * 359.97438 * 21 20 19 34 34 H 1.08002 * 119.49769 * 179.97438 * 22 21 20 35 35 H 1.07998 * 119.54364 * 179.97438 * 23 22 21 36 36 H 1.07999 * 120.18957 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 3.7020 1.3464 -0.0006 5 1 1.8832 2.3964 -1.2125 6 1 1.8832 2.3965 1.2124 7 6 2.0082 -1.2128 0.0005 8 1 3.0518 -1.2337 0.2777 9 6 1.3522 -2.4040 -0.3600 10 6 0.2166 -2.3733 -1.1940 11 6 -0.4124 -3.5336 -1.5306 12 6 0.0467 -4.7640 -1.0714 13 9 -0.6065 -5.8910 -1.4297 14 6 1.1581 -4.8550 -0.2558 15 6 1.8407 -3.6990 0.1202 16 6 3.0290 -3.7778 0.9897 17 6 4.1883 -4.4083 0.5519 18 6 5.3049 -4.4805 1.3721 19 6 5.3128 -3.9446 2.6243 20 6 4.1759 -3.2938 3.1324 21 6 4.1685 -2.7364 4.4227 22 6 3.0473 -2.1137 4.8807 23 6 1.9049 -2.0205 4.0899 24 6 1.8775 -2.5501 2.8335 25 6 3.0147 -3.1906 2.3279 26 1 -0.4851 0.8400 -0.0004 27 1 -0.1579 -1.4295 -1.5621 28 1 -1.2847 -3.4978 -2.1663 29 1 1.4981 -5.8202 0.0893 30 1 4.2200 -4.8450 -0.4353 31 1 6.1929 -4.9756 1.0075 32 1 6.2015 -4.0214 3.2330 33 1 5.0468 -2.8022 5.0478 34 1 3.0438 -1.6865 5.8726 35 1 1.0286 -1.5218 4.4768 36 1 0.9851 -2.4715 2.2303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239471367.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:25 Heat of formation + Delta-G solvation = 5.731271 kcal Electronic energy + Delta-G solvation = -22277.060470 eV Core-core repulsion = 18990.282989 eV Total energy + Delta-G solvation = -3286.777481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -47.48891 -39.59977 -37.29471 -35.71690 -33.83242 -32.48334 -29.83758 -29.80781 -29.39035 -27.78458 -25.16887 -23.07090 -22.26670 -21.95945 -21.00753 -19.66898 -17.52422 -16.98215 -16.56944 -15.76693 -15.61519 -15.30353 -14.63562 -14.25479 -14.19832 -13.84185 -13.61210 -12.97100 -12.91513 -12.87959 -12.56482 -12.23227 -12.08957 -12.04527 -11.45740 -11.30219 -11.20656 -10.97340 -10.74011 -10.54992 -10.35444 -10.27894 -10.12230 -9.58374 -9.34413 -9.09779 -8.06149 -7.81107 -7.47943 -7.15316 -6.92928 -4.55685 1.09425 1.61846 2.35940 2.58728 2.81204 2.95393 3.00067 3.02884 3.58450 3.74827 4.31871 4.71218 5.15236 5.21705 5.34508 5.41802 5.56664 5.58627 5.65930 5.88572 5.94172 5.97832 6.00663 6.03832 6.20430 6.45214 6.56549 6.65199 6.75848 6.79026 6.86619 6.90646 6.97646 7.03732 7.09039 7.23894 7.30729 7.46366 7.53650 7.64977 7.73455 7.80206 7.98221 8.33847 8.55005 8.67088 9.84929 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.010351 B = 0.008467 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.423559 B = 3306.290769 C = 4899.154137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.078 3.922 3 Si 0.906 3.094 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.426 4.426 8 H 0.085 0.915 9 C 0.128 3.872 10 C -0.151 4.151 11 C -0.114 4.114 12 C -0.058 4.058 13 F -0.176 7.176 14 C -0.086 4.086 15 C -0.185 4.185 16 C 0.052 3.948 17 C -0.149 4.149 18 C -0.101 4.101 19 C -0.141 4.141 20 C -0.046 4.046 21 C -0.129 4.129 22 C -0.113 4.113 23 C -0.146 4.146 24 C -0.052 4.052 25 C -0.044 4.044 26 H 0.286 0.714 27 H 0.128 0.872 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.371 -0.969 4.756 7.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.143 4.143 3 Si 0.729 3.271 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.453 4.453 8 H 0.103 0.897 9 C 0.124 3.876 10 C -0.170 4.170 11 C -0.133 4.133 12 C -0.078 4.078 13 F -0.155 7.155 14 C -0.105 4.105 15 C -0.187 4.187 16 C 0.052 3.948 17 C -0.167 4.167 18 C -0.119 4.119 19 C -0.159 4.159 20 C -0.046 4.046 21 C -0.147 4.147 22 C -0.132 4.132 23 C -0.164 4.164 24 C -0.070 4.070 25 C -0.044 4.044 26 H 0.098 0.902 27 H 0.146 0.854 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.136 0.864 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.137 -0.835 4.761 7.054 hybrid contribution 0.187 0.644 -0.051 0.673 sum 5.324 -0.191 4.711 7.111 Atomic orbital electron populations 1.69784 1.07684 1.30012 1.32224 1.25999 0.94753 1.01690 0.91895 0.86257 0.81395 0.80506 0.78918 1.17988 1.19369 1.19549 1.19574 0.98229 0.90580 1.36931 0.89721 1.18577 0.90400 0.90304 0.88269 1.20879 0.98825 0.96609 1.00713 1.20394 0.99927 0.91918 1.01094 1.17011 0.98789 0.81554 1.10449 1.91282 1.81423 1.51027 1.91777 1.20471 0.94928 0.97048 0.98014 1.19184 1.00013 0.92891 1.06630 1.19807 0.92650 0.91670 0.90648 1.21219 0.92679 1.02941 0.99841 1.20536 0.97876 0.99296 0.94220 1.20716 0.97280 1.01374 0.96559 1.17986 0.93785 0.98721 0.94132 1.20836 0.98333 1.00480 0.95094 1.20726 0.93594 0.99467 0.99369 1.20808 0.98251 1.02125 0.95199 1.21188 0.98246 0.93190 0.94378 1.19118 0.93376 0.98731 0.93170 0.90241 0.85406 0.88344 0.87976 0.86402 0.87034 0.86827 0.86547 0.86972 0.86706 0.84472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.78 10.96 55.55 0.61 -17.17 16 2 C 0.08 1.75 5.16 -17.32 -0.09 1.67 16 3 Si 0.91 17.48 29.59 -169.99 -5.03 12.45 16 4 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 5 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 6 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 7 C -0.43 -10.14 7.08 -37.98 -0.27 -10.41 16 8 H 0.08 2.07 7.25 -52.49 -0.38 1.69 16 9 C 0.13 3.07 4.90 -104.62 -0.51 2.56 16 10 C -0.15 -3.61 8.64 -39.29 -0.34 -3.95 16 11 C -0.11 -2.61 9.88 -39.98 -0.40 -3.00 16 12 C -0.06 -1.34 7.28 -39.29 -0.29 -1.63 16 13 F -0.18 -3.94 17.24 2.25 0.04 -3.91 16 14 C -0.09 -1.91 9.73 -39.17 -0.38 -2.30 16 15 C -0.19 -4.21 4.75 -102.38 -0.49 -4.70 16 16 C 0.05 1.09 4.64 -102.68 -0.48 0.62 16 17 C -0.15 -2.75 9.74 -39.10 -0.38 -3.13 16 18 C -0.10 -1.62 9.88 -40.13 -0.40 -2.02 16 19 C -0.14 -2.26 9.72 -39.46 -0.38 -2.64 16 20 C -0.05 -0.83 5.74 -106.87 -0.61 -1.45 16 21 C -0.13 -2.03 9.78 -39.44 -0.39 -2.42 16 22 C -0.11 -1.76 9.94 -39.94 -0.40 -2.16 16 23 C -0.15 -2.55 9.96 -39.88 -0.40 -2.95 16 24 C -0.05 -1.06 8.38 -39.61 -0.33 -1.39 16 25 C -0.04 -0.89 5.45 -104.78 -0.57 -1.46 16 26 H 0.29 5.98 8.30 -40.82 -0.34 5.64 16 27 H 0.13 3.09 6.18 -52.48 -0.32 2.77 16 28 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 29 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 30 H 0.12 2.05 8.06 -52.49 -0.42 1.62 16 31 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 32 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.14 3.09 6.46 -52.49 -0.34 2.75 16 LS Contribution 312.40 15.07 4.71 4.71 Total: -1.00 -25.19 312.40 -10.33 -35.52 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -3.56 Total: 9.15 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: -7.09 Total: -40.75 kcal Atomic # 7 Polarization: -17.78 SS G_CDS: 0.61 Total: -17.17 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.04 Total: -3.91 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.45 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -25.19 -10.33 -35.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239471367.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.250 kcal (2) G-P(sol) polarization free energy of solvation -25.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds