Wall clock time and date at job start Tue Mar 31 2020 06:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30798 * 1 3 3 Si 1.86802 * 119.99733 * 2 1 4 4 H 1.48507 * 109.46678 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47091 * 299.99768 * 3 2 1 6 6 H 1.48497 * 109.47385 * 59.99896 * 3 2 1 7 7 C 1.40043 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00275 * 197.23718 * 7 2 1 9 9 C 1.40689 * 119.99899 * 17.23803 * 7 2 1 10 10 C 1.40934 * 120.59353 * 24.84239 * 9 7 2 11 11 C 1.36208 * 119.98354 * 180.27986 * 10 9 7 12 12 C 1.39122 * 121.29831 * 359.71080 * 11 10 9 13 13 F 1.35098 * 119.38467 * 180.02562 * 12 11 10 14 14 C 1.38151 * 121.23341 * 0.02562 * 12 11 10 15 15 C 1.39417 * 119.90246 * 359.97438 * 14 12 11 16 16 C 1.47455 * 120.61685 * 180.02562 * 15 14 12 17 17 C 1.39033 * 120.70054 * 65.00016 * 16 15 14 18 18 C 1.38735 * 120.56837 * 179.97438 * 17 16 15 19 19 C 1.36204 * 121.84691 * 0.03887 * 18 17 16 20 20 C 1.40501 * 120.66827 * 0.02562 * 19 18 17 21 21 C 1.40559 * 121.32949 * 179.97438 * 20 19 18 22 22 C 1.36186 * 119.62846 * 180.02562 * 21 20 19 23 23 C 1.39253 * 121.00107 * 0.02606 * 22 21 20 24 24 C 1.36371 * 120.90918 * 359.97438 * 23 22 21 25 25 C 1.39968 * 119.61745 * 359.66882 * 24 23 22 26 26 H 0.97001 * 120.00519 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.00667 * 359.97423 * 10 9 7 28 28 H 1.07998 * 119.35334 * 179.69517 * 11 10 9 29 29 H 1.08004 * 120.05228 * 180.02562 * 14 12 11 30 30 H 1.07992 * 119.71563 * 0.02562 * 17 16 15 31 31 H 1.08006 * 119.07926 * 180.02562 * 18 17 16 32 32 H 1.08001 * 119.66783 * 179.97438 * 19 18 17 33 33 H 1.08001 * 120.18570 * 359.97438 * 21 20 19 34 34 H 1.08002 * 119.49769 * 179.97438 * 22 21 20 35 35 H 1.07998 * 119.54364 * 179.97438 * 23 22 21 36 36 H 1.07999 * 120.18957 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 3.7020 1.3464 -0.0006 5 1 1.8832 2.3964 -1.2125 6 1 1.8832 2.3965 1.2124 7 6 2.0082 -1.2128 0.0005 8 1 3.0518 -1.2337 0.2777 9 6 1.3522 -2.4040 -0.3600 10 6 0.2166 -2.3733 -1.1940 11 6 -0.4124 -3.5336 -1.5306 12 6 0.0467 -4.7640 -1.0714 13 9 -0.6065 -5.8910 -1.4297 14 6 1.1581 -4.8550 -0.2558 15 6 1.8407 -3.6990 0.1202 16 6 3.0290 -3.7778 0.9897 17 6 4.1883 -4.4083 0.5519 18 6 5.3049 -4.4805 1.3721 19 6 5.3128 -3.9446 2.6243 20 6 4.1759 -3.2938 3.1324 21 6 4.1685 -2.7364 4.4227 22 6 3.0473 -2.1137 4.8807 23 6 1.9049 -2.0205 4.0899 24 6 1.8775 -2.5501 2.8335 25 6 3.0147 -3.1906 2.3279 26 1 -0.4851 0.8400 -0.0004 27 1 -0.1579 -1.4295 -1.5621 28 1 -1.2847 -3.4978 -2.1663 29 1 1.4981 -5.8202 0.0893 30 1 4.2200 -4.8450 -0.4353 31 1 6.1929 -4.9756 1.0075 32 1 6.2015 -4.0214 3.2330 33 1 5.0468 -2.8022 5.0478 34 1 3.0438 -1.6865 5.8726 35 1 1.0286 -1.5218 4.4768 36 1 0.9851 -2.4715 2.2303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239471367.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:24 Heat of formation + Delta-G solvation = -2.333529 kcal Electronic energy + Delta-G solvation = -22277.410186 eV Core-core repulsion = 18990.282989 eV Total energy + Delta-G solvation = -3287.127197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.30907 -40.97151 -39.00129 -37.06442 -35.58791 -33.95770 -31.47620 -31.29770 -30.91621 -29.28690 -26.93002 -24.52359 -23.65210 -23.43887 -22.76758 -21.22565 -19.31683 -18.40550 -18.03783 -17.32527 -17.17086 -16.77316 -16.37144 -16.06362 -15.88447 -15.19910 -15.02709 -14.59537 -14.39838 -14.19989 -14.05682 -13.90409 -13.77496 -13.46442 -13.05252 -12.85743 -12.68853 -12.61116 -12.27543 -12.05849 -11.82905 -11.78637 -11.67148 -11.25031 -11.06590 -10.52260 -9.56912 -9.40741 -9.25146 -8.81455 -8.41727 -6.36580 -0.27334 0.27192 0.65825 0.87612 1.32269 1.35350 1.42573 1.48530 2.13744 2.24896 2.55555 3.32656 3.49378 3.81748 3.95633 4.08882 4.14006 4.22207 4.23326 4.31224 4.43507 4.46548 4.63724 4.67552 4.75479 4.98085 5.01160 5.12525 5.19573 5.25410 5.32524 5.42257 5.46216 5.53708 5.63646 5.73889 5.79517 5.87471 5.91811 5.98948 6.16365 6.18869 6.28546 6.52597 6.75502 6.87429 8.15648 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.010351 B = 0.008467 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.423559 B = 3306.290769 C = 4899.154137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.046 3.954 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.263 1.263 7 C -0.437 4.437 8 H 0.072 0.928 9 C 0.107 3.893 10 C -0.171 4.171 11 C -0.119 4.119 12 C -0.073 4.073 13 F -0.174 7.174 14 C -0.095 4.095 15 C -0.177 4.177 16 C 0.005 3.995 17 C -0.144 4.144 18 C -0.110 4.110 19 C -0.124 4.124 20 C -0.069 4.069 21 C -0.117 4.117 22 C -0.117 4.117 23 C -0.142 4.142 24 C -0.089 4.089 25 C -0.061 4.061 26 H 0.295 0.705 27 H 0.120 0.880 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.149 0.851 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.151 0.849 35 H 0.126 0.874 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.137 -0.545 6.837 10.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.173 4.173 3 Si 0.788 3.212 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.188 1.188 7 C -0.464 4.464 8 H 0.090 0.910 9 C 0.103 3.897 10 C -0.190 4.190 11 C -0.138 4.138 12 C -0.093 4.093 13 F -0.153 7.153 14 C -0.114 4.114 15 C -0.178 4.178 16 C 0.005 3.995 17 C -0.162 4.162 18 C -0.128 4.128 19 C -0.142 4.142 20 C -0.069 4.069 21 C -0.134 4.134 22 C -0.135 4.135 23 C -0.160 4.160 24 C -0.107 4.107 25 C -0.061 4.061 26 H 0.106 0.894 27 H 0.137 0.863 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.167 0.833 32 H 0.173 0.827 33 H 0.176 0.824 34 H 0.169 0.831 35 H 0.144 0.856 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.887 -0.427 6.837 10.447 hybrid contribution -0.611 0.455 -0.581 0.959 sum 7.276 0.029 6.255 9.595 Atomic orbital electron populations 1.69808 1.08747 1.31261 1.32263 1.26659 0.95369 1.04096 0.91178 0.85352 0.79624 0.76835 0.79397 1.18577 1.18327 1.18756 1.19524 0.97645 0.91397 1.37854 0.91012 1.18871 0.90832 0.91359 0.88601 1.20848 0.99741 0.96607 1.01845 1.20531 1.00355 0.91658 1.01247 1.17154 0.99301 0.81704 1.11153 1.91273 1.81408 1.50804 1.91818 1.20679 0.94877 0.97743 0.98100 1.19476 1.00392 0.92320 1.05655 1.19856 0.93064 0.95086 0.91539 1.21438 0.92840 1.01550 1.00377 1.20883 0.98112 0.99599 0.94160 1.21204 0.97643 0.98755 0.96601 1.18394 0.93640 0.99719 0.95152 1.21320 0.99621 0.98249 0.94217 1.21102 0.92508 0.99241 1.00629 1.21074 0.99776 1.00824 0.94289 1.20952 0.97564 0.96497 0.95686 1.19248 0.94411 0.99038 0.93366 0.89358 0.86261 0.86764 0.86688 0.86168 0.83309 0.82664 0.82398 0.83102 0.85636 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.94 10.96 21.84 0.24 -37.70 16 2 C 0.05 2.13 5.16 85.28 0.44 2.57 16 3 Si 0.97 36.05 29.59 68.60 2.03 38.08 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 6 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 7 C -0.44 -21.78 7.08 23.31 0.17 -21.62 16 8 H 0.07 3.67 7.25 -2.91 -0.02 3.65 16 9 C 0.11 5.42 4.90 -19.87 -0.10 5.32 16 10 C -0.17 -8.64 8.64 22.46 0.19 -8.45 16 11 C -0.12 -5.67 9.88 22.01 0.22 -5.46 16 12 C -0.07 -3.51 7.28 22.46 0.16 -3.35 16 13 F -0.17 -7.95 17.24 44.97 0.78 -7.18 16 14 C -0.10 -4.44 9.73 22.53 0.22 -4.22 16 15 C -0.18 -8.44 4.75 -18.41 -0.09 -8.52 16 16 C 0.00 0.20 4.64 -18.60 -0.09 0.11 16 17 C -0.14 -5.25 9.74 22.58 0.22 -5.03 16 18 C -0.11 -3.19 9.88 21.91 0.22 -2.98 16 19 C -0.12 -3.48 9.72 22.35 0.22 -3.26 16 20 C -0.07 -2.32 5.74 -21.32 -0.12 -2.44 16 21 C -0.12 -3.18 9.78 22.36 0.22 -2.96 16 22 C -0.12 -3.25 9.94 22.04 0.22 -3.03 16 23 C -0.14 -4.89 9.96 22.08 0.22 -4.67 16 24 C -0.09 -3.74 8.38 22.25 0.19 -3.56 16 25 C -0.06 -2.49 5.45 -19.96 -0.11 -2.59 16 26 H 0.30 12.60 8.30 -92.71 -0.77 11.84 16 27 H 0.12 6.11 6.18 -2.91 -0.02 6.09 16 28 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 29 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 30 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 31 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.16 3.04 8.06 -2.91 -0.02 3.02 16 33 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 34 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 35 H 0.13 3.89 8.06 -2.91 -0.02 3.86 16 36 H 0.10 4.80 6.46 -2.91 -0.02 4.78 16 Total: -1.00 -57.57 312.40 6.55 -51.03 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: 1.11 Total: 29.88 kcal Atomic # 6 Polarization: -76.51 SS G_CDS: 2.39 Total: -74.12 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.24 Total: -37.70 kcal Atomic # 9 Polarization: -7.95 SS G_CDS: 0.78 Total: -7.18 kcal Atomic # 14 Polarization: 36.05 SS G_CDS: 2.03 Total: 38.08 kcal Total: -57.57 6.55 -51.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239471367.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.695 kcal (2) G-P(sol) polarization free energy of solvation -57.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds