Wall clock time and date at job start Tue Mar 31 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86800 * 119.99991 * 2 1 4 4 H 1.48499 * 109.46826 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47276 * 300.00354 * 3 2 1 6 6 H 1.48505 * 109.46701 * 60.00417 * 3 2 1 7 7 C 1.39907 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99754 * 162.96295 * 7 2 1 9 9 C 1.41327 * 120.00393 * 342.96702 * 7 2 1 10 10 C 1.40498 * 120.19565 * 334.64081 * 9 7 2 11 11 C 1.38803 * 119.63878 * 179.97438 * 10 9 7 12 12 C 1.48141 * 119.97825 * 180.02562 * 11 10 9 13 13 C 1.38381 * 120.34527 * 309.99779 * 12 11 10 14 14 C 1.39015 * 120.68620 * 179.97438 * 13 12 11 15 15 C 1.36226 * 121.14575 * 0.02732 * 14 13 12 16 16 C 1.40535 * 120.05906 * 359.97438 * 15 14 13 17 17 C 1.40587 * 121.17522 * 179.97438 * 16 15 14 18 18 C 1.36112 * 119.65465 * 180.02562 * 17 16 15 19 19 C 1.39321 * 120.96679 * 359.97438 * 18 17 16 20 20 C 1.36209 * 120.94288 * 0.02562 * 19 18 17 21 21 C 1.40243 * 119.68124 * 359.67841 * 20 19 18 22 22 C 1.39945 * 120.04957 * 359.74700 * 11 10 9 23 23 C 1.38195 * 120.40364 * 0.51038 * 22 11 10 24 24 C 1.38095 * 120.36316 * 359.49025 * 23 22 11 25 25 F 1.35101 * 120.03239 * 180.27674 * 24 23 22 26 26 H 0.97001 * 119.99608 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.18582 * 0.02562 * 10 9 7 28 28 H 1.07993 * 119.65528 * 0.02562 * 13 12 11 29 29 H 1.08003 * 119.42902 * 180.02562 * 14 13 12 30 30 H 1.07999 * 119.96844 * 179.97438 * 15 14 13 31 31 H 1.08004 * 120.16986 * 359.97438 * 17 16 15 32 32 H 1.08004 * 119.51445 * 179.97438 * 18 17 16 33 33 H 1.07991 * 119.53069 * 180.02562 * 19 18 17 34 34 H 1.07999 * 120.15910 * 179.97438 * 20 19 18 35 35 H 1.08001 * 119.80089 * 180.27531 * 22 11 10 36 36 H 1.08001 * 119.81659 * 179.76327 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3463 -0.0006 5 1 1.8839 2.3965 -1.2124 6 1 1.8839 2.3963 1.2126 7 6 2.0081 -1.2117 -0.0005 8 1 3.0526 -1.2321 -0.2746 9 6 1.3480 -2.4089 0.3574 10 6 0.2204 -2.3710 1.1947 11 6 -0.4194 -3.5538 1.5385 12 6 -1.6093 -3.5225 2.4204 13 6 -1.5767 -2.8229 3.6139 14 6 -2.6894 -2.7884 4.4466 15 6 -3.8388 -3.4395 4.1140 16 6 -3.9156 -4.1622 2.9112 17 6 -5.0898 -4.8432 2.5451 18 6 -5.1299 -5.5342 1.3731 19 6 -4.0232 -5.5770 0.5279 20 6 -2.8696 -4.9289 0.8511 21 6 -2.7936 -4.2017 2.0478 22 6 0.0553 -4.7755 1.0480 23 6 1.1674 -4.8155 0.2286 24 6 1.8169 -3.6490 -0.1242 25 9 2.9002 -3.6954 -0.9302 26 1 -0.4850 0.8401 0.0004 27 1 -0.1471 -1.4266 1.5681 28 1 -0.6779 -2.2976 3.9010 29 1 -2.6417 -2.2357 5.3732 30 1 -4.6917 -3.4003 4.7753 31 1 -5.9551 -4.8189 3.1909 32 1 -6.0330 -6.0569 1.0943 33 1 -4.0808 -6.1320 -0.3967 34 1 -2.0192 -4.9709 0.1867 35 1 -0.4482 -5.6930 1.3145 36 1 1.5279 -5.7640 -0.1416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239471709.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:28 Heat of formation + Delta-G solvation = 4.138250 kcal Electronic energy + Delta-G solvation = -21823.071407 eV Core-core repulsion = 18536.224847 eV Total energy + Delta-G solvation = -3286.846560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.29552 -40.07997 -37.48142 -35.98558 -34.05458 -32.59825 -30.10337 -29.82630 -29.71025 -27.50093 -25.46268 -23.25767 -22.63263 -21.93600 -21.20844 -19.79124 -17.55691 -17.12327 -16.37306 -16.12193 -15.83521 -15.27320 -14.61238 -14.48703 -14.10637 -13.97611 -13.57455 -13.26371 -13.11432 -12.78643 -12.69748 -12.52587 -11.97002 -11.79110 -11.68610 -11.40376 -11.25176 -11.10063 -10.86174 -10.71721 -10.49584 -10.36656 -9.93626 -9.68448 -9.50195 -9.30589 -8.28753 -7.78548 -7.69078 -7.04544 -6.87699 -4.51709 0.82914 1.36302 2.18792 2.62234 2.73304 3.01404 3.05413 3.08422 3.37127 3.83792 4.35501 4.52999 4.92294 5.10935 5.16002 5.28868 5.38443 5.41340 5.50521 5.69658 5.74514 5.80785 5.83617 6.04011 6.11395 6.30838 6.37519 6.43989 6.55531 6.58969 6.75507 6.80112 6.85197 6.91283 7.03355 7.12887 7.16456 7.32081 7.42720 7.47068 7.76554 7.84628 7.96250 8.39160 8.62512 8.69891 10.01791 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016475 B = 0.005180 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.110111 B = 5403.799613 C = 6313.204434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.451 4.451 8 H 0.085 0.915 9 C 0.084 3.916 10 C -0.118 4.118 11 C -0.057 4.057 12 C 0.010 3.990 13 C -0.125 4.125 14 C -0.103 4.103 15 C -0.133 4.133 16 C -0.047 4.047 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.137 4.137 20 C -0.087 4.087 21 C -0.046 4.046 22 C -0.204 4.204 23 C -0.122 4.122 24 C -0.025 4.025 25 F -0.163 7.163 26 H 0.284 0.716 27 H 0.130 0.870 28 H 0.124 0.876 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.140 0.860 35 H 0.102 0.898 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.927 -4.666 5.415 10.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.480 4.480 8 H 0.103 0.897 9 C 0.081 3.919 10 C -0.138 4.138 11 C -0.058 4.058 12 C 0.010 3.990 13 C -0.143 4.143 14 C -0.121 4.121 15 C -0.151 4.151 16 C -0.047 4.047 17 C -0.138 4.138 18 C -0.134 4.134 19 C -0.155 4.155 20 C -0.104 4.104 21 C -0.046 4.046 22 C -0.223 4.223 23 C -0.141 4.141 24 C -0.045 4.045 25 F -0.142 7.142 26 H 0.095 0.905 27 H 0.148 0.852 28 H 0.142 0.858 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.136 0.864 34 H 0.158 0.842 35 H 0.120 0.880 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.090 -4.496 5.363 10.697 hybrid contribution 0.418 0.767 -0.217 0.900 sum -7.672 -3.729 5.146 9.962 Atomic orbital electron populations 1.69821 1.07576 1.29665 1.33992 1.25930 0.94790 1.01551 0.92076 0.86183 0.81062 0.80422 0.78743 1.18183 1.19771 1.19487 1.19556 0.98221 0.90750 1.39488 0.89733 1.17549 0.92437 0.91080 0.90843 1.21300 0.97128 0.96228 0.99099 1.18444 0.94420 0.94218 0.98703 1.19119 0.92284 0.94062 0.93494 1.21204 0.98795 1.00049 0.94252 1.20724 0.93145 0.98866 0.99338 1.20853 0.98298 0.99537 0.96403 1.18018 0.93667 0.98229 0.94767 1.20914 0.96853 0.98623 0.97426 1.20772 0.98329 0.99500 0.94824 1.20822 0.93474 1.01328 0.99922 1.21462 0.98463 0.94631 0.95885 1.18084 0.93082 0.98494 0.94945 1.20229 1.00223 0.95705 1.06165 1.20412 0.97220 0.95769 1.00711 1.17946 0.90833 0.94842 1.00929 1.91276 1.53514 1.97332 1.72045 0.90502 0.85197 0.85784 0.86389 0.86302 0.86185 0.86610 0.86389 0.84220 0.88033 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.62 10.97 55.55 0.61 -19.01 16 2 C 0.08 1.84 5.15 -17.34 -0.09 1.75 16 3 Si 0.91 18.24 29.59 -169.99 -5.03 13.21 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 6 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.45 -11.82 8.77 -37.78 -0.33 -12.15 16 8 H 0.08 2.20 7.74 -52.49 -0.41 1.79 16 9 C 0.08 2.19 5.57 -106.80 -0.59 1.60 16 10 C -0.12 -2.91 8.12 -38.52 -0.31 -3.22 16 11 C -0.06 -1.27 5.05 -104.98 -0.53 -1.80 16 12 C 0.01 0.21 5.49 -104.53 -0.57 -0.37 16 13 C -0.12 -2.22 9.46 -39.24 -0.37 -2.59 16 14 C -0.10 -1.54 9.93 -40.02 -0.40 -1.93 16 15 C -0.13 -1.93 9.75 -39.44 -0.38 -2.31 16 16 C -0.05 -0.76 5.74 -106.85 -0.61 -1.37 16 17 C -0.12 -1.65 9.77 -39.46 -0.39 -2.03 16 18 C -0.12 -1.53 9.95 -39.94 -0.40 -1.93 16 19 C -0.14 -2.01 9.95 -39.91 -0.40 -2.40 16 20 C -0.09 -1.51 8.56 -39.56 -0.34 -1.85 16 21 C -0.05 -0.85 5.74 -106.60 -0.61 -1.46 16 22 C -0.20 -4.30 7.60 -38.96 -0.30 -4.59 16 23 C -0.12 -2.69 9.99 -39.65 -0.40 -3.08 16 24 C -0.03 -0.63 7.31 -38.57 -0.28 -0.91 16 25 F -0.16 -4.05 16.71 2.25 0.04 -4.01 16 26 H 0.28 6.43 8.30 -40.82 -0.34 6.10 16 27 H 0.13 3.29 6.16 -52.49 -0.32 2.97 16 28 H 0.12 2.15 8.02 -52.49 -0.42 1.73 16 29 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 30 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 32 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 33 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.14 2.56 5.57 -52.49 -0.29 2.27 16 35 H 0.10 1.93 7.22 -52.49 -0.38 1.55 16 36 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 311.82 15.07 4.70 4.70 Total: -1.00 -27.33 311.82 -10.48 -37.81 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -3.49 Total: 7.96 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: -7.30 Total: -40.65 kcal Atomic # 7 Polarization: -19.62 SS G_CDS: 0.61 Total: -19.01 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.04 Total: -4.01 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.33 -10.48 -37.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239471709.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.947 kcal (2) G-P(sol) polarization free energy of solvation -27.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds