Wall clock time and date at job start Tue Mar 31 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86800 * 119.99991 * 2 1 4 4 H 1.48499 * 109.46826 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47276 * 300.00354 * 3 2 1 6 6 H 1.48505 * 109.46701 * 60.00417 * 3 2 1 7 7 C 1.39907 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99754 * 162.96295 * 7 2 1 9 9 C 1.41327 * 120.00393 * 342.96702 * 7 2 1 10 10 C 1.40498 * 120.19565 * 334.64081 * 9 7 2 11 11 C 1.38803 * 119.63878 * 179.97438 * 10 9 7 12 12 C 1.48141 * 119.97825 * 180.02562 * 11 10 9 13 13 C 1.38381 * 120.34527 * 309.99779 * 12 11 10 14 14 C 1.39015 * 120.68620 * 179.97438 * 13 12 11 15 15 C 1.36226 * 121.14575 * 0.02732 * 14 13 12 16 16 C 1.40535 * 120.05906 * 359.97438 * 15 14 13 17 17 C 1.40587 * 121.17522 * 179.97438 * 16 15 14 18 18 C 1.36112 * 119.65465 * 180.02562 * 17 16 15 19 19 C 1.39321 * 120.96679 * 359.97438 * 18 17 16 20 20 C 1.36209 * 120.94288 * 0.02562 * 19 18 17 21 21 C 1.40243 * 119.68124 * 359.67841 * 20 19 18 22 22 C 1.39945 * 120.04957 * 359.74700 * 11 10 9 23 23 C 1.38195 * 120.40364 * 0.51038 * 22 11 10 24 24 C 1.38095 * 120.36316 * 359.49025 * 23 22 11 25 25 F 1.35101 * 120.03239 * 180.27674 * 24 23 22 26 26 H 0.97001 * 119.99608 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.18582 * 0.02562 * 10 9 7 28 28 H 1.07993 * 119.65528 * 0.02562 * 13 12 11 29 29 H 1.08003 * 119.42902 * 180.02562 * 14 13 12 30 30 H 1.07999 * 119.96844 * 179.97438 * 15 14 13 31 31 H 1.08004 * 120.16986 * 359.97438 * 17 16 15 32 32 H 1.08004 * 119.51445 * 179.97438 * 18 17 16 33 33 H 1.07991 * 119.53069 * 180.02562 * 19 18 17 34 34 H 1.07999 * 120.15910 * 179.97438 * 20 19 18 35 35 H 1.08001 * 119.80089 * 180.27531 * 22 11 10 36 36 H 1.08001 * 119.81659 * 179.76327 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7027 1.3463 -0.0006 5 1 1.8839 2.3965 -1.2124 6 1 1.8839 2.3963 1.2126 7 6 2.0081 -1.2117 -0.0005 8 1 3.0526 -1.2321 -0.2746 9 6 1.3480 -2.4089 0.3574 10 6 0.2204 -2.3710 1.1947 11 6 -0.4194 -3.5538 1.5385 12 6 -1.6093 -3.5225 2.4204 13 6 -1.5767 -2.8229 3.6139 14 6 -2.6894 -2.7884 4.4466 15 6 -3.8388 -3.4395 4.1140 16 6 -3.9156 -4.1622 2.9112 17 6 -5.0898 -4.8432 2.5451 18 6 -5.1299 -5.5342 1.3731 19 6 -4.0232 -5.5770 0.5279 20 6 -2.8696 -4.9289 0.8511 21 6 -2.7936 -4.2017 2.0478 22 6 0.0553 -4.7755 1.0480 23 6 1.1674 -4.8155 0.2286 24 6 1.8169 -3.6490 -0.1242 25 9 2.9002 -3.6954 -0.9302 26 1 -0.4850 0.8401 0.0004 27 1 -0.1471 -1.4266 1.5681 28 1 -0.6779 -2.2976 3.9010 29 1 -2.6417 -2.2357 5.3732 30 1 -4.6917 -3.4003 4.7753 31 1 -5.9551 -4.8189 3.1909 32 1 -6.0330 -6.0569 1.0943 33 1 -4.0808 -6.1320 -0.3967 34 1 -2.0192 -4.9709 0.1867 35 1 -0.4482 -5.6930 1.3145 36 1 1.5279 -5.7640 -0.1416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239471709.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:28 Heat of formation + Delta-G solvation = -6.417035 kcal Electronic energy + Delta-G solvation = -21823.529118 eV Core-core repulsion = 18536.224847 eV Total energy + Delta-G solvation = -3287.304272 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.24475 -41.33305 -39.18378 -37.21022 -35.83749 -34.02055 -31.79064 -31.18083 -31.09917 -28.97555 -27.33465 -24.53700 -23.95086 -23.37634 -22.91282 -21.34464 -19.29929 -18.34716 -18.05484 -17.63515 -17.22810 -16.89545 -16.36735 -16.00706 -15.91991 -15.22109 -15.04654 -14.60592 -14.43053 -14.31117 -14.25449 -13.80028 -13.73446 -13.44937 -13.28398 -12.89395 -12.78320 -12.63689 -12.25132 -12.13100 -12.02842 -11.77024 -11.52210 -11.38812 -11.17199 -10.76278 -9.57074 -9.47988 -9.35879 -8.76029 -8.44798 -6.47717 -0.41567 0.16414 0.61396 0.84540 1.25875 1.34617 1.45520 1.50543 2.15921 2.16678 2.57533 3.24386 3.45329 3.72138 3.96755 3.97625 4.03463 4.13336 4.22889 4.31231 4.38331 4.53727 4.57848 4.61784 4.69382 4.89561 4.93094 5.06591 5.13555 5.17353 5.31062 5.32834 5.40868 5.50058 5.60555 5.64255 5.68645 5.77931 5.93800 5.94108 6.06177 6.11006 6.19333 6.48346 6.72082 6.80196 8.21119 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016475 B = 0.005180 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.110111 B = 5403.799613 C = 6313.204434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.039 3.961 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.257 1.257 7 C -0.492 4.492 8 H 0.072 0.928 9 C 0.057 3.943 10 C -0.139 4.139 11 C -0.047 4.047 12 C -0.036 4.036 13 C -0.128 4.128 14 C -0.115 4.115 15 C -0.112 4.112 16 C -0.069 4.069 17 C -0.110 4.110 18 C -0.119 4.119 19 C -0.124 4.124 20 C -0.127 4.127 21 C -0.062 4.062 22 C -0.193 4.193 23 C -0.118 4.118 24 C -0.060 4.060 25 F -0.169 7.169 26 H 0.292 0.708 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.151 0.849 30 H 0.161 0.839 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.140 0.860 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.134 -5.351 6.934 14.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.177 4.177 3 Si 0.804 3.196 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.181 1.181 7 C -0.521 4.521 8 H 0.090 0.910 9 C 0.054 3.946 10 C -0.159 4.159 11 C -0.047 4.047 12 C -0.036 4.036 13 C -0.146 4.146 14 C -0.133 4.133 15 C -0.130 4.130 16 C -0.069 4.069 17 C -0.128 4.128 18 C -0.136 4.136 19 C -0.142 4.142 20 C -0.145 4.145 21 C -0.062 4.062 22 C -0.212 4.212 23 C -0.136 4.136 24 C -0.080 4.080 25 F -0.149 7.149 26 H 0.103 0.897 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.168 0.832 30 H 0.179 0.821 31 H 0.177 0.823 32 H 0.173 0.827 33 H 0.158 0.842 34 H 0.135 0.865 35 H 0.143 0.857 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.303 -5.202 6.883 14.219 hybrid contribution 1.192 0.804 -0.630 1.570 sum -10.111 -4.399 6.253 12.676 Atomic orbital electron populations 1.69866 1.08865 1.30982 1.34324 1.26741 0.95541 1.04445 0.90960 0.85123 0.79237 0.75816 0.79393 1.18472 1.18740 1.18108 1.19698 0.98010 0.92289 1.42090 0.90997 1.17901 0.93351 0.91815 0.91499 1.21192 0.97844 0.96666 1.00152 1.18740 0.94624 0.93543 0.97783 1.19099 0.92431 0.97520 0.94556 1.21350 0.99770 0.99142 0.94303 1.21014 0.92391 0.99717 1.00128 1.21361 0.99009 0.96816 0.95772 1.18405 0.93936 0.99334 0.95234 1.21376 0.96803 0.96744 0.97859 1.21208 0.98972 0.99226 0.94227 1.21179 0.92793 0.99508 1.00715 1.21376 0.99436 0.97440 0.96222 1.18244 0.93397 0.98639 0.95903 1.20534 0.99401 0.96410 1.04883 1.20723 0.96824 0.96012 1.00089 1.18249 0.91693 0.95709 1.02328 1.91236 1.53880 1.97389 1.72358 0.89682 0.86749 0.86777 0.83168 0.82100 0.82313 0.82741 0.84238 0.86456 0.85679 0.85013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.59 10.97 21.82 0.24 -42.35 16 2 C 0.04 2.00 5.15 85.24 0.44 2.44 16 3 Si 0.98 38.57 29.59 68.60 2.03 40.60 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 6 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 7 C -0.49 -27.51 8.77 23.43 0.21 -27.31 16 8 H 0.07 4.03 7.74 -2.91 -0.02 4.01 16 9 C 0.06 3.20 5.57 -21.28 -0.12 3.08 16 10 C -0.14 -7.31 8.12 22.96 0.19 -7.13 16 11 C -0.05 -2.16 5.05 -20.10 -0.10 -2.26 16 12 C -0.04 -1.46 5.49 -19.81 -0.11 -1.57 16 13 C -0.13 -4.60 9.46 22.49 0.21 -4.39 16 14 C -0.11 -3.19 9.93 21.99 0.22 -2.97 16 15 C -0.11 -2.82 9.75 22.36 0.22 -2.60 16 16 C -0.07 -2.03 5.74 -21.31 -0.12 -2.16 16 17 C -0.11 -2.49 9.77 22.35 0.22 -2.28 16 18 C -0.12 -2.60 9.95 22.04 0.22 -2.38 16 19 C -0.12 -3.33 9.95 22.06 0.22 -3.11 16 20 C -0.13 -4.39 8.56 22.28 0.19 -4.20 16 21 C -0.06 -2.25 5.74 -21.15 -0.12 -2.37 16 22 C -0.19 -8.37 7.60 22.67 0.17 -8.20 16 23 C -0.12 -5.33 9.99 22.23 0.22 -5.11 16 24 C -0.06 -3.14 7.31 22.93 0.17 -2.98 16 25 F -0.17 -8.91 16.71 44.97 0.75 -8.16 16 26 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 27 H 0.11 6.26 6.16 -2.91 -0.02 6.24 16 28 H 0.11 4.17 8.02 -2.91 -0.02 4.15 16 29 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 30 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 31 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 32 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.14 3.02 8.06 -2.92 -0.02 3.00 16 34 H 0.12 4.45 5.57 -2.91 -0.02 4.43 16 35 H 0.13 4.78 7.22 -2.91 -0.02 4.76 16 36 H 0.13 5.09 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -64.36 311.82 6.45 -57.91 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 1.11 Total: 27.49 kcal Atomic # 6 Polarization: -77.80 SS G_CDS: 2.32 Total: -75.48 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: 0.24 Total: -42.35 kcal Atomic # 9 Polarization: -8.91 SS G_CDS: 0.75 Total: -8.16 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -64.36 6.45 -57.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239471709.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.496 kcal (2) G-P(sol) polarization free energy of solvation -64.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds