Wall clock time and date at job start Tue Mar 31 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86796 * 120.00109 * 2 1 4 4 H 1.48497 * 109.47491 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47126 * 300.00243 * 3 2 1 6 6 H 1.48503 * 109.47192 * 59.99959 * 3 2 1 7 7 C 1.39921 * 120.00228 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00309 * 197.92629 * 7 2 1 9 9 C 1.41435 * 119.99877 * 17.92504 * 7 2 1 10 10 C 1.40761 * 120.16659 * 24.50860 * 9 7 2 11 11 C 1.37922 * 119.99061 * 180.02562 * 10 9 7 12 12 F 1.35106 * 119.82819 * 180.02562 * 11 10 9 13 13 C 1.38628 * 120.34157 * 359.72314 * 11 10 9 14 14 C 1.39773 * 120.33629 * 0.55143 * 13 11 10 15 15 C 1.48166 * 119.99756 * 179.71756 * 14 13 11 16 16 C 1.38361 * 120.34385 * 129.70787 * 15 14 13 17 17 C 1.39031 * 120.68506 * 179.97438 * 16 15 14 18 18 C 1.36212 * 121.14409 * 0.05540 * 17 16 15 19 19 C 1.40531 * 120.06054 * 359.96665 * 18 17 16 20 20 C 1.40585 * 121.17879 * 180.02562 * 19 18 17 21 21 C 1.36114 * 119.65829 * 179.97438 * 20 19 18 22 22 C 1.39335 * 120.95720 * 0.02562 * 21 20 19 23 23 C 1.36200 * 120.94958 * 359.97438 * 22 21 20 24 24 C 1.40241 * 119.67985 * 359.97438 * 23 22 21 25 25 C 1.38897 * 120.00066 * 359.45585 * 14 13 11 26 26 H 0.96995 * 119.99804 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.00643 * 0.02562 * 10 9 7 28 28 H 1.08000 * 119.83361 * 180.27686 * 13 11 10 29 29 H 1.07995 * 119.65870 * 0.02562 * 16 15 14 30 30 H 1.07997 * 119.42443 * 180.02562 * 17 16 15 31 31 H 1.08000 * 119.97321 * 180.23984 * 18 17 16 32 32 H 1.07997 * 120.17107 * 359.95987 * 20 19 18 33 33 H 1.07998 * 119.51806 * 179.97438 * 21 20 19 34 34 H 1.08006 * 119.52028 * 179.97438 * 22 21 20 35 35 H 1.08002 * 120.15423 * 180.02562 * 23 22 21 36 36 H 1.08004 * 120.16901 * 180.29477 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3464 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0080 -1.2117 -0.0005 8 1 3.0486 -1.2346 0.2873 9 6 1.3523 -2.4067 -0.3781 10 6 0.2233 -2.3593 -1.2173 11 6 -0.4136 -3.5268 -1.5828 12 9 -1.4967 -3.4775 -2.3888 13 6 0.0556 -4.7510 -1.1323 14 6 1.1721 -4.8140 -0.2938 15 6 1.6634 -6.1261 0.1882 16 6 3.0007 -6.4594 0.0663 17 6 3.4695 -7.6884 0.5167 18 6 2.6298 -8.5964 1.0875 19 6 1.2638 -8.2993 1.2307 20 6 0.3764 -9.2188 1.8167 21 6 -0.9407 -8.8986 1.9404 22 6 -1.4249 -7.6708 1.4938 23 6 -0.5936 -6.7563 0.9213 24 6 0.7700 -7.0512 0.7782 25 6 1.8243 -3.6470 0.0831 26 1 -0.4849 0.8400 0.0004 27 1 -0.1442 -1.4088 -1.5750 28 1 -0.4468 -5.6604 -1.4272 29 1 3.6877 -5.7574 -0.3826 30 1 4.5174 -7.9273 0.4118 31 1 3.0150 -9.5440 1.4343 32 1 0.7379 -10.1744 2.1666 33 1 -1.6205 -9.6069 2.3906 34 1 -2.4745 -7.4410 1.6032 35 1 -0.9825 -5.8083 0.5800 36 1 2.6901 -3.6929 0.7271 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239472324.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:39 Heat of formation + Delta-G solvation = 2.784987 kcal Electronic energy + Delta-G solvation = -21609.368975 eV Core-core repulsion = 18322.463733 eV Total energy + Delta-G solvation = -3286.905242 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -47.71154 -40.15002 -37.52353 -36.07523 -34.15115 -32.48840 -30.14693 -29.79913 -29.65382 -27.65804 -25.56471 -23.40873 -22.64863 -22.16869 -20.81542 -20.08396 -17.72211 -17.12214 -16.44163 -16.00477 -15.68934 -14.99842 -14.84382 -14.65052 -14.41391 -14.09198 -13.87222 -13.32898 -13.19275 -13.14586 -12.81923 -12.47155 -12.12129 -11.73546 -11.61683 -11.27923 -11.16170 -11.11633 -10.81976 -10.69138 -10.64589 -10.49604 -10.06053 -9.70758 -9.56804 -9.28211 -8.36034 -7.87399 -7.55853 -7.15190 -6.91485 -4.58137 0.75343 1.28928 2.15511 2.56323 2.74435 2.99883 3.03506 3.06148 3.31263 3.81300 4.32134 4.47385 4.84721 5.04000 5.08956 5.23738 5.31949 5.38527 5.40843 5.63023 5.65072 5.72675 5.80191 6.05014 6.20415 6.26191 6.36804 6.42295 6.51302 6.55867 6.68029 6.76621 6.80447 6.84896 6.98444 7.06066 7.10806 7.28492 7.39834 7.55970 7.63782 7.78193 8.05560 8.39771 8.66402 8.68508 10.00392 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019622 B = 0.004427 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.594509 B = 6323.821230 C = 7028.808548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.454 4.454 8 H 0.085 0.915 9 C 0.127 3.873 10 C -0.195 4.195 11 C 0.106 3.894 12 F -0.166 7.166 13 C -0.262 4.262 14 C -0.014 4.014 15 C 0.003 3.997 16 C -0.122 4.122 17 C -0.105 4.105 18 C -0.129 4.129 19 C -0.048 4.048 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.135 4.135 23 C -0.088 4.088 24 C -0.046 4.046 25 C -0.206 4.206 26 H 0.284 0.716 27 H 0.130 0.870 28 H 0.104 0.896 29 H 0.126 0.874 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.119 0.881 35 H 0.141 0.859 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.904 -11.024 2.416 11.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.483 4.483 8 H 0.103 0.897 9 C 0.124 3.876 10 C -0.216 4.216 11 C 0.087 3.913 12 F -0.145 7.145 13 C -0.282 4.282 14 C -0.014 4.014 15 C 0.003 3.997 16 C -0.140 4.140 17 C -0.123 4.123 18 C -0.147 4.147 19 C -0.048 4.048 20 C -0.138 4.138 21 C -0.133 4.133 22 C -0.153 4.153 23 C -0.106 4.106 24 C -0.046 4.046 25 C -0.225 4.225 26 H 0.095 0.905 27 H 0.148 0.852 28 H 0.122 0.878 29 H 0.144 0.856 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.158 0.842 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.657 -10.854 2.406 11.241 hybrid contribution 0.047 0.766 -0.069 0.771 sum 1.704 -10.088 2.337 10.494 Atomic orbital electron populations 1.69817 1.07737 1.29694 1.33594 1.25979 0.94765 1.01682 0.91989 0.86209 0.81014 0.80541 0.78752 1.18178 1.19516 1.19808 1.19637 0.98387 0.90914 1.39349 0.89734 1.17289 0.90174 0.92160 0.87931 1.21374 1.00810 0.96088 1.03296 1.17542 0.85411 0.94957 0.93356 1.91347 1.53646 1.97541 1.71934 1.20278 1.02587 0.95163 1.10173 1.17999 0.95395 0.90552 0.97481 1.19125 0.92681 0.92885 0.95030 1.21207 0.94970 0.96795 1.01072 1.20732 0.99490 0.93869 0.98229 1.20880 0.92407 0.99730 1.01686 1.18029 0.93936 0.93742 0.99091 1.20921 0.93513 0.98801 1.00565 1.20799 0.95614 0.96887 1.00007 1.20855 0.99952 0.94284 1.00212 1.21487 0.92448 1.00207 0.96469 1.18087 0.93898 0.93334 0.99243 1.21113 1.03513 0.91437 1.06442 0.90483 0.85218 0.87817 0.85610 0.86257 0.86191 0.86095 0.86501 0.86271 0.84164 0.87940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.56 10.96 55.55 0.61 -18.96 16 2 C 0.08 1.80 5.13 -17.35 -0.09 1.71 16 3 Si 0.91 17.79 29.59 -169.99 -5.03 12.76 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.45 -11.39 9.05 -37.74 -0.34 -11.73 16 8 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 9 C 0.13 3.23 5.57 -106.88 -0.60 2.63 16 10 C -0.20 -5.00 8.66 -38.74 -0.34 -5.34 16 11 C 0.11 2.56 7.28 -39.55 -0.29 2.27 16 12 F -0.17 -3.86 17.26 2.25 0.04 -3.82 16 13 C -0.26 -5.82 7.59 -38.86 -0.29 -6.11 16 14 C -0.01 -0.30 5.03 -105.00 -0.53 -0.83 16 15 C 0.00 0.05 5.49 -104.53 -0.57 -0.52 16 16 C -0.12 -2.03 9.46 -39.24 -0.37 -2.40 16 17 C -0.11 -1.46 9.93 -40.02 -0.40 -1.86 16 18 C -0.13 -1.76 9.75 -39.45 -0.38 -2.14 16 19 C -0.05 -0.75 5.74 -106.85 -0.61 -1.36 16 20 C -0.12 -1.58 9.77 -39.46 -0.39 -1.97 16 21 C -0.12 -1.48 9.95 -39.94 -0.40 -1.88 16 22 C -0.13 -1.96 9.95 -39.91 -0.40 -2.36 16 23 C -0.09 -1.53 8.59 -39.56 -0.34 -1.87 16 24 C -0.05 -0.82 5.73 -106.61 -0.61 -1.43 16 25 C -0.21 -4.76 9.23 -38.49 -0.36 -5.12 16 26 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 27 H 0.13 3.45 6.15 -52.49 -0.32 3.13 16 28 H 0.10 2.16 7.27 -52.49 -0.38 1.78 16 29 H 0.13 1.98 8.02 -52.49 -0.42 1.56 16 30 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 32 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 35 H 0.14 2.63 5.60 -52.49 -0.29 2.34 16 36 H 0.10 2.24 8.03 -52.48 -0.42 1.82 16 LS Contribution 312.61 15.07 4.71 4.71 Total: -1.00 -26.77 312.61 -10.48 -37.24 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -3.50 Total: 8.37 kcal Atomic # 6 Polarization: -33.00 SS G_CDS: -7.30 Total: -40.30 kcal Atomic # 7 Polarization: -19.56 SS G_CDS: 0.61 Total: -18.96 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.04 Total: -3.82 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -26.77 -10.48 -37.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239472324.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.029 kcal (2) G-P(sol) polarization free energy of solvation -26.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds