Wall clock time and date at job start Tue Mar 31 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86796 * 120.00109 * 2 1 4 4 H 1.48497 * 109.47491 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47126 * 300.00243 * 3 2 1 6 6 H 1.48503 * 109.47192 * 59.99959 * 3 2 1 7 7 C 1.39921 * 120.00228 * 180.02562 * 2 1 3 8 8 H 1.07990 * 120.00309 * 197.92629 * 7 2 1 9 9 C 1.41435 * 119.99877 * 17.92504 * 7 2 1 10 10 C 1.40761 * 120.16659 * 24.50860 * 9 7 2 11 11 C 1.37922 * 119.99061 * 180.02562 * 10 9 7 12 12 F 1.35106 * 119.82819 * 180.02562 * 11 10 9 13 13 C 1.38628 * 120.34157 * 359.72314 * 11 10 9 14 14 C 1.39773 * 120.33629 * 0.55143 * 13 11 10 15 15 C 1.48166 * 119.99756 * 179.71756 * 14 13 11 16 16 C 1.38361 * 120.34385 * 129.70787 * 15 14 13 17 17 C 1.39031 * 120.68506 * 179.97438 * 16 15 14 18 18 C 1.36212 * 121.14409 * 0.05540 * 17 16 15 19 19 C 1.40531 * 120.06054 * 359.96665 * 18 17 16 20 20 C 1.40585 * 121.17879 * 180.02562 * 19 18 17 21 21 C 1.36114 * 119.65829 * 179.97438 * 20 19 18 22 22 C 1.39335 * 120.95720 * 0.02562 * 21 20 19 23 23 C 1.36200 * 120.94958 * 359.97438 * 22 21 20 24 24 C 1.40241 * 119.67985 * 359.97438 * 23 22 21 25 25 C 1.38897 * 120.00066 * 359.45585 * 14 13 11 26 26 H 0.96995 * 119.99804 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.00643 * 0.02562 * 10 9 7 28 28 H 1.08000 * 119.83361 * 180.27686 * 13 11 10 29 29 H 1.07995 * 119.65870 * 0.02562 * 16 15 14 30 30 H 1.07997 * 119.42443 * 180.02562 * 17 16 15 31 31 H 1.08000 * 119.97321 * 180.23984 * 18 17 16 32 32 H 1.07997 * 120.17107 * 359.95987 * 20 19 18 33 33 H 1.07998 * 119.51806 * 179.97438 * 21 20 19 34 34 H 1.08006 * 119.52028 * 179.97438 * 22 21 20 35 35 H 1.08002 * 120.15423 * 180.02562 * 23 22 21 36 36 H 1.08004 * 120.16901 * 180.29477 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3464 0.0006 5 1 1.8836 2.3964 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0080 -1.2117 -0.0005 8 1 3.0486 -1.2346 0.2873 9 6 1.3523 -2.4067 -0.3781 10 6 0.2233 -2.3593 -1.2173 11 6 -0.4136 -3.5268 -1.5828 12 9 -1.4967 -3.4775 -2.3888 13 6 0.0556 -4.7510 -1.1323 14 6 1.1721 -4.8140 -0.2938 15 6 1.6634 -6.1261 0.1882 16 6 3.0007 -6.4594 0.0663 17 6 3.4695 -7.6884 0.5167 18 6 2.6298 -8.5964 1.0875 19 6 1.2638 -8.2993 1.2307 20 6 0.3764 -9.2188 1.8167 21 6 -0.9407 -8.8986 1.9404 22 6 -1.4249 -7.6708 1.4938 23 6 -0.5936 -6.7563 0.9213 24 6 0.7700 -7.0512 0.7782 25 6 1.8243 -3.6470 0.0831 26 1 -0.4849 0.8400 0.0004 27 1 -0.1442 -1.4088 -1.5750 28 1 -0.4468 -5.6604 -1.4272 29 1 3.6877 -5.7574 -0.3826 30 1 4.5174 -7.9273 0.4118 31 1 3.0150 -9.5440 1.4343 32 1 0.7379 -10.1744 2.1666 33 1 -1.6205 -9.6069 2.3906 34 1 -2.4745 -7.4410 1.6032 35 1 -0.9825 -5.8083 0.5800 36 1 2.6901 -3.6929 0.7271 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239472324.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:38 Heat of formation + Delta-G solvation = -7.107517 kcal Electronic energy + Delta-G solvation = -21609.797946 eV Core-core repulsion = 18322.463733 eV Total energy + Delta-G solvation = -3287.334213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.63931 -41.35947 -39.24074 -37.26834 -35.85534 -33.92957 -31.68768 -31.19898 -31.10354 -29.11833 -27.43038 -24.69581 -23.85290 -23.57287 -22.61111 -21.61719 -19.37572 -18.30165 -17.94024 -17.50543 -17.03533 -16.69236 -16.64580 -16.39618 -16.29906 -15.29054 -15.17543 -14.79700 -14.53561 -14.34580 -14.23212 -13.93873 -13.60224 -13.43851 -12.95597 -12.92127 -12.73845 -12.62116 -12.22900 -12.16215 -12.07192 -11.86390 -11.73339 -11.35222 -11.10219 -10.80189 -9.55226 -9.50434 -9.38096 -8.76643 -8.51632 -6.50714 -0.44467 0.14126 0.67139 0.71759 1.25462 1.37904 1.48254 1.54334 2.14746 2.16565 2.56278 3.23116 3.47276 3.54277 3.82460 3.97328 4.02924 4.14396 4.21751 4.37299 4.40824 4.50125 4.55680 4.61704 4.69155 4.80693 4.93898 4.99006 5.08769 5.19378 5.27789 5.31557 5.39498 5.51507 5.57879 5.65561 5.66534 5.71809 5.85591 5.88809 6.02092 6.15570 6.19971 6.49619 6.78172 6.78995 8.21954 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019622 B = 0.004427 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.594509 B = 6323.821230 C = 7028.808548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.035 3.965 3 Si 0.987 3.013 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.264 1.264 7 C -0.485 4.485 8 H 0.089 0.911 9 C 0.106 3.894 10 C -0.224 4.224 11 C 0.097 3.903 12 F -0.165 7.165 13 C -0.259 4.259 14 C 0.003 3.997 15 C -0.046 4.046 16 C -0.116 4.116 17 C -0.115 4.115 18 C -0.107 4.107 19 C -0.070 4.070 20 C -0.107 4.107 21 C -0.120 4.120 22 C -0.124 4.124 23 C -0.131 4.131 24 C -0.060 4.060 25 C -0.219 4.219 26 H 0.292 0.708 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.125 0.875 30 H 0.156 0.844 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.135 0.865 35 H 0.110 0.890 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.282 -13.929 3.855 14.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.182 4.182 3 Si 0.807 3.193 4 H -0.175 1.175 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.513 4.513 8 H 0.107 0.893 9 C 0.103 3.897 10 C -0.245 4.245 11 C 0.078 3.922 12 F -0.144 7.144 13 C -0.279 4.279 14 C 0.002 3.998 15 C -0.046 4.046 16 C -0.134 4.134 17 C -0.132 4.132 18 C -0.124 4.124 19 C -0.070 4.070 20 C -0.124 4.124 21 C -0.138 4.138 22 C -0.142 4.142 23 C -0.149 4.149 24 C -0.060 4.060 25 C -0.239 4.239 26 H 0.103 0.897 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.143 0.857 30 H 0.173 0.827 31 H 0.181 0.819 32 H 0.180 0.820 33 H 0.172 0.828 34 H 0.153 0.847 35 H 0.128 0.872 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.027 -13.776 3.842 14.619 hybrid contribution -0.426 1.421 -0.448 1.549 sum 2.601 -12.356 3.395 13.075 Atomic orbital electron populations 1.69882 1.09380 1.31083 1.34054 1.26899 0.95442 1.05018 0.90808 0.85076 0.79630 0.75585 0.78989 1.17509 1.18985 1.18900 1.19935 0.98823 0.91848 1.40704 0.89268 1.17611 0.90433 0.93421 0.88220 1.21260 1.02223 0.95789 1.05203 1.17719 0.85497 0.95380 0.93598 1.91330 1.53588 1.97586 1.71909 1.20426 1.02937 0.94674 1.09878 1.18269 0.94062 0.91938 0.95500 1.19055 0.94293 0.92391 0.98889 1.21408 0.93842 0.98109 1.00070 1.21067 1.01480 0.92608 0.98072 1.21401 0.91294 1.00829 0.98918 1.18413 0.95575 0.93260 0.99775 1.21402 0.93144 0.99504 0.98396 1.21201 0.96488 0.96516 0.99554 1.21171 1.00450 0.94418 0.98189 1.21351 0.93345 1.00325 0.99918 1.18231 0.93767 0.94368 0.99678 1.21253 1.04220 0.91450 1.06955 0.89732 0.87041 0.86769 0.85736 0.82660 0.81916 0.82042 0.82750 0.84670 0.87154 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.78 10.96 21.82 0.24 -42.54 16 2 C 0.03 1.71 5.13 85.25 0.44 2.15 16 3 Si 0.99 37.09 29.59 68.60 2.03 39.12 16 4 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 5 H -0.27 -9.67 7.11 99.48 0.71 -8.97 16 6 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 7 C -0.48 -25.46 9.05 23.47 0.21 -25.24 16 8 H 0.09 4.42 7.91 -2.92 -0.02 4.40 16 9 C 0.11 5.71 5.57 -21.33 -0.12 5.59 16 10 C -0.22 -12.32 8.66 22.81 0.20 -12.12 16 11 C 0.10 4.97 7.28 22.29 0.16 5.14 16 12 F -0.17 -8.13 17.26 44.97 0.78 -7.36 16 13 C -0.26 -12.19 7.59 22.73 0.17 -12.02 16 14 C 0.00 0.12 5.03 -20.11 -0.10 0.02 16 15 C -0.05 -1.78 5.49 -19.81 -0.11 -1.89 16 16 C -0.12 -3.77 9.46 22.49 0.21 -3.55 16 17 C -0.11 -2.80 9.93 21.99 0.22 -2.59 16 18 C -0.11 -2.43 9.75 22.36 0.22 -2.22 16 19 C -0.07 -1.97 5.74 -21.31 -0.12 -2.09 16 20 C -0.11 -2.32 9.77 22.35 0.22 -2.11 16 21 C -0.12 -2.63 9.95 22.04 0.22 -2.41 16 22 C -0.12 -3.45 9.95 22.06 0.22 -3.23 16 23 C -0.13 -4.66 8.59 22.28 0.19 -4.47 16 24 C -0.06 -2.15 5.73 -21.15 -0.12 -2.27 16 25 C -0.22 -10.75 9.23 22.98 0.21 -10.53 16 26 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 27 H 0.11 6.41 6.15 -2.91 -0.02 6.39 16 28 H 0.11 5.03 7.27 -2.91 -0.02 5.01 16 29 H 0.12 3.92 8.02 -2.91 -0.02 3.90 16 30 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 31 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 32 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 33 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 35 H 0.11 4.46 5.60 -2.91 -0.02 4.44 16 36 H 0.11 5.05 8.03 -2.91 -0.02 5.03 16 Total: -1.00 -62.72 312.61 6.47 -56.24 By element: Atomic # 1 Polarization: 27.27 SS G_CDS: 1.11 Total: 28.38 kcal Atomic # 6 Polarization: -76.16 SS G_CDS: 2.32 Total: -73.84 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.24 Total: -42.54 kcal Atomic # 9 Polarization: -8.13 SS G_CDS: 0.78 Total: -7.36 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.12 kcal Total: -62.72 6.47 -56.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239472324.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.134 kcal (2) G-P(sol) polarization free energy of solvation -62.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds