Wall clock time and date at job start Tue Mar 31 2020 06:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30788 * 1 3 3 Si 1.86799 * 119.99813 * 2 1 4 4 H 1.48508 * 109.46936 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47214 * 299.99502 * 3 2 1 6 6 H 1.48496 * 109.47727 * 59.99935 * 3 2 1 7 7 C 1.40076 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99933 * 159.21868 * 7 2 1 9 9 C 1.40664 * 120.00014 * 339.22713 * 7 2 1 10 10 C 1.41069 * 120.35945 * 323.96139 * 9 7 2 11 11 F 1.35098 * 120.09232 * 359.97438 * 10 9 7 12 12 C 1.37652 * 119.81048 * 179.70340 * 10 9 7 13 13 C 1.38913 * 120.57352 * 0.29841 * 12 10 9 14 14 C 1.37977 * 120.74381 * 359.95645 * 13 12 10 15 15 C 1.39315 * 120.16280 * 0.02562 * 14 13 12 16 16 C 1.47458 * 120.28530 * 180.02562 * 15 14 13 17 17 C 1.39029 * 120.69872 * 64.73138 * 16 15 14 18 18 C 1.38740 * 120.56875 * 179.70367 * 17 16 15 19 19 C 1.36205 * 121.83935 * 0.57384 * 18 17 16 20 20 C 1.40498 * 120.67419 * 359.72914 * 19 18 17 21 21 C 1.40559 * 121.32887 * 179.97438 * 20 19 18 22 22 C 1.36193 * 119.62503 * 179.97438 * 21 20 19 23 23 C 1.39261 * 120.99925 * 0.02700 * 22 21 20 24 24 C 1.36369 * 120.91181 * 359.92722 * 23 22 21 25 25 C 1.39963 * 119.61596 * 0.09375 * 24 23 22 26 26 H 0.97004 * 120.00266 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.71253 * 180.27699 * 12 10 9 28 28 H 1.07996 * 119.62765 * 179.97438 * 13 12 10 29 29 H 1.08004 * 119.92020 * 180.02562 * 14 13 12 30 30 H 1.07997 * 119.71356 * 359.96637 * 17 16 15 31 31 H 1.08001 * 119.08023 * 180.28321 * 18 17 16 32 32 H 1.07998 * 119.66309 * 179.69826 * 19 18 17 33 33 H 1.07993 * 120.18812 * 359.95226 * 21 20 19 34 34 H 1.07997 * 119.49880 * 180.02562 * 22 21 20 35 35 H 1.08001 * 119.54114 * 179.97438 * 23 22 21 36 36 H 1.07995 * 120.19237 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 3.7019 1.3464 -0.0006 5 1 1.8831 2.3964 -1.2126 6 1 1.8831 2.3965 1.2124 7 6 2.0082 -1.2131 0.0005 8 1 3.0355 -1.2437 -0.3313 9 6 1.3735 -2.3915 0.4331 10 6 0.4470 -2.3533 1.4962 11 9 0.1641 -1.1816 2.1064 12 6 -0.1721 -3.5123 1.9063 13 6 0.1117 -4.7225 1.2863 14 6 1.0178 -4.7875 0.2478 15 6 1.6621 -3.6334 -0.1923 16 6 2.6306 -3.6997 -1.3023 17 6 2.2207 -4.0586 -2.5814 18 6 3.1331 -4.1141 -3.6251 19 6 4.4533 -3.8346 -3.4410 20 6 4.9390 -3.4709 -2.1738 21 6 6.2987 -3.1801 -1.9681 22 6 6.7319 -2.8306 -0.7251 23 6 5.8477 -2.7572 0.3482 24 6 4.5221 -3.0319 0.1839 25 6 4.0424 -3.3947 -1.0799 26 1 -0.4851 0.8401 -0.0004 27 1 -0.8845 -3.4804 2.7175 28 1 -0.3827 -5.6226 1.6207 29 1 1.2282 -5.7355 -0.2250 30 1 1.1823 -4.2920 -2.7651 31 1 2.7876 -4.3913 -4.6102 32 1 5.1339 -3.8935 -4.2775 33 1 6.9960 -3.2337 -2.7910 34 1 7.7770 -2.6072 -0.5695 35 1 6.2168 -2.4780 1.3241 36 1 3.8466 -2.9709 1.0243 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239472329.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:30 Heat of formation + Delta-G solvation = 14.112340 kcal Electronic energy + Delta-G solvation = -22562.054377 eV Core-core repulsion = 19275.640326 eV Total energy + Delta-G solvation = -3286.414051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.03663 -39.67963 -37.36638 -35.70243 -33.75506 -32.51175 -29.99804 -29.67385 -29.47754 -27.61381 -25.31444 -23.05716 -22.29867 -21.95468 -20.98826 -19.65844 -17.48415 -16.99586 -16.52762 -15.74125 -15.40191 -15.21247 -14.58538 -14.28885 -13.95399 -13.72350 -13.68540 -12.99482 -12.95297 -12.89690 -12.68159 -12.21469 -11.89660 -11.55287 -11.41298 -11.36546 -11.21944 -10.84607 -10.72905 -10.66203 -10.44535 -10.29527 -10.12689 -9.53998 -9.22738 -9.00500 -8.07177 -7.70896 -7.29344 -7.02961 -6.90775 -4.50539 1.07385 1.59581 2.37779 2.65744 2.76468 3.06651 3.10798 3.13330 3.56351 3.91431 4.48115 4.68391 5.13069 5.18323 5.30412 5.37637 5.54360 5.57167 5.67245 5.89472 5.92411 5.98016 6.01535 6.03350 6.23143 6.42114 6.47404 6.56004 6.65902 6.77260 6.81183 6.92323 6.98215 7.06693 7.09214 7.23379 7.39119 7.42422 7.47212 7.58524 7.74090 7.76758 8.05027 8.34761 8.65264 8.75734 10.07719 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.012896 B = 0.007741 C = 0.006168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.720900 B = 3616.037052 C = 4538.699526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.082 3.918 3 Si 0.901 3.099 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.456 4.456 8 H 0.093 0.907 9 C 0.108 3.892 10 C 0.038 3.962 11 F -0.143 7.143 12 C -0.130 4.130 13 C -0.218 4.218 14 C -0.077 4.077 15 C -0.165 4.165 16 C 0.055 3.945 17 C -0.141 4.141 18 C -0.098 4.098 19 C -0.143 4.143 20 C -0.045 4.045 21 C -0.125 4.125 22 C -0.116 4.116 23 C -0.143 4.143 24 C -0.066 4.066 25 C -0.048 4.048 26 H 0.284 0.716 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.910 -4.421 -2.691 8.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.484 4.484 8 H 0.111 0.889 9 C 0.105 3.895 10 C 0.018 3.982 11 F -0.122 7.122 12 C -0.150 4.150 13 C -0.238 4.238 14 C -0.095 4.095 15 C -0.167 4.167 16 C 0.055 3.945 17 C -0.159 4.159 18 C -0.116 4.116 19 C -0.161 4.161 20 C -0.045 4.045 21 C -0.143 4.143 22 C -0.134 4.134 23 C -0.162 4.162 24 C -0.084 4.084 25 C -0.048 4.048 26 H 0.095 0.905 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.137 0.863 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.134 0.866 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.683 -4.209 -2.687 8.342 hybrid contribution 0.061 1.118 0.032 1.121 sum 6.744 -3.091 -2.655 7.879 Atomic orbital electron populations 1.69754 1.07886 1.30019 1.31346 1.25852 0.94557 1.01351 0.92275 0.86338 0.81409 0.81088 0.78667 1.18015 1.19904 1.19465 1.19535 0.99938 0.91035 1.37892 0.88873 1.17412 0.90527 0.92391 0.89203 1.17728 1.03721 0.80327 0.96434 1.91335 1.92553 1.46839 1.81438 1.20655 1.00582 0.92647 1.01083 1.20027 1.05353 0.96016 1.02374 1.20597 0.96307 0.95951 0.96676 1.18310 1.04549 0.93792 1.00042 1.19812 0.90318 0.91573 0.92810 1.21177 0.99283 1.03516 0.91969 1.20556 0.93351 0.99250 0.98465 1.20702 0.95849 1.03819 0.95744 1.17970 0.93243 0.99839 0.93418 1.20874 0.94352 1.01846 0.97195 1.20720 0.99187 1.00324 0.93198 1.20798 0.93763 1.02818 0.98777 1.21131 0.95262 0.95016 0.97007 1.19130 0.92538 1.00017 0.93095 0.90468 0.88129 0.88262 0.88479 0.86297 0.86970 0.86791 0.86444 0.86869 0.86581 0.84932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.09 11.13 55.55 0.62 -19.47 16 2 C 0.08 2.06 4.48 -17.31 -0.08 1.98 16 3 Si 0.90 19.25 29.61 -169.99 -5.03 14.21 16 4 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.46 -11.71 7.64 -37.98 -0.29 -12.00 16 8 H 0.09 2.36 5.25 -52.49 -0.28 2.09 16 9 C 0.11 2.73 4.60 -106.46 -0.49 2.24 16 10 C 0.04 0.97 6.68 -38.72 -0.26 0.71 16 11 F -0.14 -3.78 14.24 2.25 0.03 -3.75 16 12 C -0.13 -2.93 9.99 -39.55 -0.39 -3.33 16 13 C -0.22 -4.53 10.02 -39.43 -0.40 -4.93 16 14 C -0.08 -1.62 9.72 -39.28 -0.38 -2.00 16 15 C -0.17 -3.77 4.63 -104.30 -0.48 -4.26 16 16 C 0.05 1.16 4.82 -102.68 -0.49 0.67 16 17 C -0.14 -2.68 9.73 -39.10 -0.38 -3.06 16 18 C -0.10 -1.60 9.88 -40.13 -0.40 -2.00 16 19 C -0.14 -2.30 9.72 -39.46 -0.38 -2.69 16 20 C -0.04 -0.80 5.74 -106.87 -0.61 -1.41 16 21 C -0.12 -1.93 9.78 -39.44 -0.39 -2.31 16 22 C -0.12 -1.74 9.95 -39.94 -0.40 -2.14 16 23 C -0.14 -2.38 9.96 -39.87 -0.40 -2.78 16 24 C -0.07 -1.29 7.59 -39.61 -0.30 -1.59 16 25 C -0.05 -0.96 5.05 -104.78 -0.53 -1.49 16 26 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 27 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 28 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 29 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 30 H 0.12 2.16 8.06 -52.49 -0.42 1.73 16 31 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 35 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.13 2.75 6.46 -52.49 -0.34 2.41 16 LS Contribution 308.80 15.07 4.65 4.65 Total: -1.00 -27.68 308.80 -10.33 -38.01 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -3.56 Total: 6.74 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: -7.05 Total: -40.40 kcal Atomic # 7 Polarization: -20.09 SS G_CDS: 0.62 Total: -19.47 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.03 Total: -3.75 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.68 -10.33 -38.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239472329.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.125 kcal (2) G-P(sol) polarization free energy of solvation -27.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds