Wall clock time and date at job start Tue Mar 31 2020 06:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30788 * 1 3 3 Si 1.86799 * 119.99813 * 2 1 4 4 H 1.48508 * 109.46936 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47214 * 299.99502 * 3 2 1 6 6 H 1.48496 * 109.47727 * 59.99935 * 3 2 1 7 7 C 1.40076 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99933 * 159.21868 * 7 2 1 9 9 C 1.40664 * 120.00014 * 339.22713 * 7 2 1 10 10 C 1.41069 * 120.35945 * 323.96139 * 9 7 2 11 11 F 1.35098 * 120.09232 * 359.97438 * 10 9 7 12 12 C 1.37652 * 119.81048 * 179.70340 * 10 9 7 13 13 C 1.38913 * 120.57352 * 0.29841 * 12 10 9 14 14 C 1.37977 * 120.74381 * 359.95645 * 13 12 10 15 15 C 1.39315 * 120.16280 * 0.02562 * 14 13 12 16 16 C 1.47458 * 120.28530 * 180.02562 * 15 14 13 17 17 C 1.39029 * 120.69872 * 64.73138 * 16 15 14 18 18 C 1.38740 * 120.56875 * 179.70367 * 17 16 15 19 19 C 1.36205 * 121.83935 * 0.57384 * 18 17 16 20 20 C 1.40498 * 120.67419 * 359.72914 * 19 18 17 21 21 C 1.40559 * 121.32887 * 179.97438 * 20 19 18 22 22 C 1.36193 * 119.62503 * 179.97438 * 21 20 19 23 23 C 1.39261 * 120.99925 * 0.02700 * 22 21 20 24 24 C 1.36369 * 120.91181 * 359.92722 * 23 22 21 25 25 C 1.39963 * 119.61596 * 0.09375 * 24 23 22 26 26 H 0.97004 * 120.00266 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.71253 * 180.27699 * 12 10 9 28 28 H 1.07996 * 119.62765 * 179.97438 * 13 12 10 29 29 H 1.08004 * 119.92020 * 180.02562 * 14 13 12 30 30 H 1.07997 * 119.71356 * 359.96637 * 17 16 15 31 31 H 1.08001 * 119.08023 * 180.28321 * 18 17 16 32 32 H 1.07998 * 119.66309 * 179.69826 * 19 18 17 33 33 H 1.07993 * 120.18812 * 359.95226 * 21 20 19 34 34 H 1.07997 * 119.49880 * 180.02562 * 22 21 20 35 35 H 1.08001 * 119.54114 * 179.97438 * 23 22 21 36 36 H 1.07995 * 120.19237 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 3.7019 1.3464 -0.0006 5 1 1.8831 2.3964 -1.2126 6 1 1.8831 2.3965 1.2124 7 6 2.0082 -1.2131 0.0005 8 1 3.0355 -1.2437 -0.3313 9 6 1.3735 -2.3915 0.4331 10 6 0.4470 -2.3533 1.4962 11 9 0.1641 -1.1816 2.1064 12 6 -0.1721 -3.5123 1.9063 13 6 0.1117 -4.7225 1.2863 14 6 1.0178 -4.7875 0.2478 15 6 1.6621 -3.6334 -0.1923 16 6 2.6306 -3.6997 -1.3023 17 6 2.2207 -4.0586 -2.5814 18 6 3.1331 -4.1141 -3.6251 19 6 4.4533 -3.8346 -3.4410 20 6 4.9390 -3.4709 -2.1738 21 6 6.2987 -3.1801 -1.9681 22 6 6.7319 -2.8306 -0.7251 23 6 5.8477 -2.7572 0.3482 24 6 4.5221 -3.0319 0.1839 25 6 4.0424 -3.3947 -1.0799 26 1 -0.4851 0.8401 -0.0004 27 1 -0.8845 -3.4804 2.7175 28 1 -0.3827 -5.6226 1.6207 29 1 1.2282 -5.7355 -0.2250 30 1 1.1823 -4.2920 -2.7651 31 1 2.7876 -4.3913 -4.6102 32 1 5.1339 -3.8935 -4.2775 33 1 6.9960 -3.2337 -2.7910 34 1 7.7770 -2.6072 -0.5695 35 1 6.2168 -2.4780 1.3241 36 1 3.8466 -2.9709 1.0243 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239472329.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:29 Heat of formation + Delta-G solvation = 3.163549 kcal Electronic energy + Delta-G solvation = -22562.529152 eV Core-core repulsion = 19275.640326 eV Total energy + Delta-G solvation = -3286.888826 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.98791 -41.04046 -39.04200 -37.03108 -35.57285 -33.98180 -31.62619 -31.14309 -30.95786 -29.13120 -27.11358 -24.47994 -23.65497 -23.41898 -22.76092 -21.21183 -19.32270 -18.36596 -17.95946 -17.26402 -17.07134 -16.69315 -16.42014 -16.03069 -15.71831 -15.21292 -15.09972 -14.62829 -14.39753 -14.21775 -14.19759 -13.58771 -13.54807 -13.34932 -13.10101 -12.96533 -12.72921 -12.48794 -12.38449 -12.08224 -11.93262 -11.74609 -11.65235 -11.20759 -10.99049 -10.49093 -9.41808 -9.38600 -9.11607 -8.74501 -8.44291 -6.39253 -0.27282 0.26834 0.70442 0.88685 1.30214 1.30574 1.39908 1.44173 2.15576 2.24630 2.66746 3.31017 3.42548 3.86033 3.97426 4.11928 4.15261 4.23429 4.29181 4.36561 4.43615 4.57262 4.62788 4.68422 4.75217 4.82097 5.02378 5.13416 5.20997 5.26340 5.33913 5.41652 5.49672 5.57908 5.68085 5.70938 5.77268 5.88706 5.91384 5.99508 6.15537 6.25904 6.28470 6.48879 6.81559 6.92016 8.27125 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.012896 B = 0.007741 C = 0.006168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.720900 B = 3616.037052 C = 4538.699526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.042 3.958 3 Si 0.960 3.040 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.267 1.267 7 C -0.481 4.481 8 H 0.087 0.913 9 C 0.083 3.917 10 C -0.003 4.003 11 F -0.159 7.159 12 C -0.138 4.138 13 C -0.204 4.204 14 C -0.088 4.088 15 C -0.156 4.156 16 C 0.008 3.992 17 C -0.143 4.143 18 C -0.109 4.109 19 C -0.127 4.127 20 C -0.069 4.069 21 C -0.115 4.115 22 C -0.119 4.119 23 C -0.137 4.137 24 C -0.102 4.102 25 C -0.065 4.065 26 H 0.287 0.713 27 H 0.120 0.880 28 H 0.137 0.863 29 H 0.123 0.877 30 H 0.117 0.883 31 H 0.147 0.853 32 H 0.155 0.845 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.134 0.866 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.364 -5.515 -4.525 11.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.176 4.176 3 Si 0.781 3.219 4 H -0.180 1.180 5 H -0.189 1.189 6 H -0.192 1.192 7 C -0.510 4.510 8 H 0.105 0.895 9 C 0.080 3.920 10 C -0.023 4.023 11 F -0.138 7.138 12 C -0.157 4.157 13 C -0.223 4.223 14 C -0.106 4.106 15 C -0.158 4.158 16 C 0.008 3.992 17 C -0.161 4.161 18 C -0.127 4.127 19 C -0.144 4.144 20 C -0.069 4.069 21 C -0.133 4.133 22 C -0.137 4.137 23 C -0.155 4.155 24 C -0.121 4.121 25 C -0.065 4.065 26 H 0.097 0.903 27 H 0.138 0.862 28 H 0.155 0.845 29 H 0.141 0.859 30 H 0.135 0.865 31 H 0.165 0.835 32 H 0.173 0.827 33 H 0.175 0.825 34 H 0.171 0.829 35 H 0.152 0.848 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.137 -5.318 -4.519 11.497 hybrid contribution -0.608 1.226 0.565 1.480 sum 8.529 -4.093 -3.954 10.253 Atomic orbital electron populations 1.69806 1.09085 1.30685 1.33804 1.26573 0.95166 1.04108 0.91730 0.85469 0.79996 0.77517 0.78908 1.18010 1.18887 1.19192 1.19588 0.99833 0.91958 1.39606 0.89540 1.17719 0.91124 0.93519 0.89602 1.18179 1.05637 0.80774 0.97703 1.91272 1.92850 1.47870 1.81761 1.20963 1.00690 0.92396 1.01662 1.20495 1.04190 0.96591 1.01048 1.20996 0.96163 0.96604 0.96852 1.18716 1.03842 0.93405 0.99801 1.19897 0.90965 0.95147 0.93220 1.21369 0.99955 1.02660 0.92080 1.20875 0.93284 0.99414 0.99133 1.21188 0.96315 1.00896 0.96050 1.18385 0.94314 1.00626 0.93561 1.21344 0.93710 0.99644 0.98558 1.21136 1.00718 0.99400 0.92402 1.21133 0.92887 1.00923 1.00536 1.20993 0.96304 0.98348 0.96412 1.19273 0.92555 1.00523 0.94118 0.90267 0.86233 0.84548 0.85873 0.86465 0.83491 0.82737 0.82486 0.82945 0.84811 0.88011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.57 11.13 21.85 0.24 -44.33 16 2 C 0.04 2.20 4.48 85.29 0.38 2.58 16 3 Si 0.96 40.93 29.61 68.60 2.03 42.97 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 6 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.48 -26.11 7.64 23.31 0.18 -25.93 16 8 H 0.09 4.65 5.25 -2.91 -0.02 4.64 16 9 C 0.08 4.44 4.60 -21.06 -0.10 4.35 16 10 C 0.00 -0.14 6.68 22.83 0.15 0.01 16 11 F -0.16 -8.91 14.24 44.97 0.64 -8.27 16 12 C -0.14 -6.33 9.99 22.29 0.22 -6.11 16 13 C -0.20 -8.34 10.02 22.37 0.22 -8.11 16 14 C -0.09 -3.71 9.72 22.47 0.22 -3.49 16 15 C -0.16 -7.39 4.63 -19.65 -0.09 -7.48 16 16 C 0.01 0.33 4.82 -18.61 -0.09 0.24 16 17 C -0.14 -5.37 9.73 22.58 0.22 -5.15 16 18 C -0.11 -3.30 9.88 21.92 0.22 -3.08 16 19 C -0.13 -3.63 9.72 22.35 0.22 -3.41 16 20 C -0.07 -2.31 5.74 -21.32 -0.12 -2.43 16 21 C -0.11 -3.09 9.78 22.36 0.22 -2.87 16 22 C -0.12 -3.16 9.95 22.04 0.22 -2.94 16 23 C -0.14 -4.42 9.96 22.08 0.22 -4.20 16 24 C -0.10 -4.11 7.59 22.25 0.17 -3.94 16 25 C -0.06 -2.62 5.05 -19.97 -0.10 -2.72 16 26 H 0.29 14.51 8.30 -92.71 -0.77 13.74 16 27 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 28 H 0.14 4.51 8.06 -2.91 -0.02 4.49 16 29 H 0.12 4.47 8.06 -2.91 -0.02 4.44 16 30 H 0.12 4.27 8.06 -2.91 -0.02 4.25 16 31 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 32 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 33 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 34 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 35 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 36 H 0.10 4.59 6.46 -2.91 -0.02 4.57 16 Total: -1.00 -64.33 308.80 6.38 -57.95 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 1.11 Total: 26.37 kcal Atomic # 6 Polarization: -77.05 SS G_CDS: 2.36 Total: -74.69 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.24 Total: -44.33 kcal Atomic # 9 Polarization: -8.91 SS G_CDS: 0.64 Total: -8.27 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.97 kcal Total: -64.33 6.38 -57.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239472329.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.118 kcal (2) G-P(sol) polarization free energy of solvation -64.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds