Wall clock time and date at job start Tue Mar 31 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86799 * 119.99980 * 2 1 4 4 H 1.48501 * 109.46910 * 274.60675 * 3 2 1 5 5 H 1.48493 * 109.47326 * 34.60922 * 3 2 1 6 6 H 1.48501 * 109.46799 * 154.60939 * 3 2 1 7 7 C 1.39931 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00000 * 161.87778 * 7 2 1 9 9 C 1.41218 * 119.99638 * 341.87382 * 7 2 1 10 10 C 1.39967 * 119.48882 * 334.15232 * 9 7 2 11 11 C 1.39894 * 120.10906 * 179.97438 * 10 9 7 12 12 C 1.40861 * 121.13948 * 180.02562 * 11 10 9 13 13 C 1.36199 * 119.60147 * 179.28018 * 12 11 10 14 14 C 1.39244 * 120.94213 * 0.72363 * 13 12 11 15 15 C 1.36539 * 120.97907 * 359.48744 * 14 13 12 16 16 C 1.39801 * 119.73976 * 0.02562 * 15 14 13 17 17 C 1.46318 * 121.16716 * 179.97438 * 16 15 14 18 18 C 1.48167 * 120.34088 * 0.02562 * 17 16 15 19 19 C 1.39460 * 120.10171 * 129.72266 * 18 17 16 20 20 C 1.37941 * 119.88967 * 179.97438 * 19 18 17 21 21 C 1.38578 * 120.10714 * 0.02562 * 20 19 18 22 22 F 1.35100 * 119.89502 * 179.97438 * 21 20 19 23 23 C 1.38569 * 120.21195 * 0.22485 * 21 20 19 24 24 C 1.37948 * 120.10568 * 359.49939 * 23 21 20 25 25 C 1.36689 * 119.31885 * 179.75038 * 17 16 15 26 26 H 0.97000 * 119.99990 * 0.02562 * 1 2 3 27 27 H 1.07992 * 119.94604 * 359.97438 * 10 9 7 28 28 H 1.07994 * 120.19577 * 359.97313 * 12 11 10 29 29 H 1.08004 * 119.52695 * 180.20513 * 13 12 11 30 30 H 1.08000 * 119.50797 * 179.50298 * 14 13 12 31 31 H 1.08004 * 120.13037 * 180.02562 * 15 14 13 32 32 H 1.08001 * 120.05698 * 0.02562 * 19 18 17 33 33 H 1.08001 * 119.94923 * 179.97438 * 20 19 18 34 34 H 1.08003 * 119.94761 * 179.72417 * 23 21 20 35 35 H 1.07999 * 120.05405 * 180.25203 * 24 23 21 36 36 H 1.08004 * 119.70619 * 180.27698 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3924 2.1026 -1.3956 5 1 1.4920 2.6226 0.7952 6 1 3.5852 1.4139 0.6003 7 6 2.0080 -1.2118 0.0005 8 1 3.0478 -1.2352 -0.2904 9 6 1.3544 -2.4043 0.3816 10 6 0.2526 -2.3412 1.2425 11 6 -0.4049 -3.5143 1.6279 12 6 -1.5160 -3.4760 2.4929 13 6 -2.1417 -4.6361 2.8361 14 6 -1.6897 -5.8625 2.3560 15 6 -0.6130 -5.9362 1.5195 16 6 0.0491 -4.7660 1.1368 17 6 1.2063 -4.8087 0.2423 18 6 1.7017 -6.1040 -0.2793 19 6 1.9277 -6.2675 -1.6457 20 6 2.3894 -7.4751 -2.1265 21 6 2.6282 -8.5251 -1.2542 22 9 3.0799 -9.7062 -1.7298 23 6 2.4002 -8.3691 0.1037 24 6 1.9439 -7.1634 0.5947 25 6 1.8222 -3.6409 -0.1116 26 1 -0.4850 0.8400 -0.0004 27 1 -0.0904 -1.3854 1.6099 28 1 -1.8765 -2.5315 2.8726 29 1 -2.9956 -4.6050 3.4967 30 1 -2.1984 -6.7688 2.6495 31 1 -0.2743 -6.8948 1.1550 32 1 1.7422 -5.4496 -2.3263 33 1 2.5643 -7.6029 -3.1845 34 1 2.5836 -9.1917 0.7792 35 1 1.7704 -7.0415 1.6537 36 1 2.6741 -3.6648 -0.7751 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239477844.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:40 Heat of formation + Delta-G solvation = 4.577086 kcal Electronic energy + Delta-G solvation = -21524.973288 eV Core-core repulsion = 18238.145758 eV Total energy + Delta-G solvation = -3286.827531 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.76121 -39.43951 -38.14115 -35.75965 -33.67411 -31.95457 -31.03422 -29.79045 -29.44132 -27.54734 -25.35127 -22.94994 -22.81319 -21.81536 -21.17887 -20.04038 -17.77744 -17.45259 -16.29553 -16.13843 -15.83678 -15.45571 -15.18024 -14.92202 -14.35413 -13.98485 -13.48268 -13.30882 -13.13914 -12.99357 -12.56836 -12.39615 -12.21520 -11.96406 -11.80479 -11.53768 -11.18808 -10.95802 -10.92696 -10.81725 -10.53580 -10.06048 -9.74999 -9.63833 -9.27591 -8.94247 -8.80324 -8.26413 -7.56857 -6.94545 -6.73553 -4.46405 1.12782 1.41300 1.77557 2.23357 2.90538 2.98832 3.03776 3.15455 3.78317 3.84344 3.98602 4.40765 4.72664 4.92716 4.99101 5.11495 5.47129 5.48043 5.60867 5.67508 5.71405 5.84692 6.05860 6.14264 6.19130 6.27244 6.32803 6.38381 6.54637 6.58440 6.70288 6.84873 6.93824 6.96280 7.07094 7.21450 7.33084 7.38681 7.46406 7.60745 7.82857 7.99391 8.08036 8.43587 8.65506 8.71925 9.99888 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.004969 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.264048 B = 5633.429776 C = 7292.174931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.448 4.448 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.202 4.202 11 C 0.001 3.999 12 C -0.136 4.136 13 C -0.119 4.119 14 C -0.188 4.188 15 C -0.085 4.085 16 C -0.117 4.117 17 C -0.059 4.059 18 C -0.021 4.021 19 C -0.085 4.085 20 C -0.152 4.152 21 C 0.078 3.922 22 F -0.148 7.148 23 C -0.154 4.154 24 C -0.085 4.085 25 C -0.121 4.121 26 H 0.284 0.716 27 H 0.122 0.878 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.709 -8.123 -0.033 8.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.146 4.146 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.477 4.477 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.222 4.222 11 C 0.001 3.999 12 C -0.155 4.155 13 C -0.137 4.137 14 C -0.207 4.207 15 C -0.103 4.103 16 C -0.118 4.118 17 C -0.059 4.059 18 C -0.021 4.021 19 C -0.103 4.103 20 C -0.171 4.171 21 C 0.059 3.941 22 F -0.126 7.126 23 C -0.172 4.172 24 C -0.103 4.103 25 C -0.139 4.139 26 H 0.095 0.905 27 H 0.139 0.861 28 H 0.127 0.873 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.153 0.847 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.530 -7.993 -0.082 8.139 hybrid contribution 0.301 0.589 -0.180 0.686 sum 1.831 -7.404 -0.262 7.632 Atomic orbital electron populations 1.69833 1.07655 1.29610 1.32984 1.25925 0.94761 1.01476 0.92406 0.86297 0.80828 0.80515 0.79207 1.19442 1.19855 1.18263 1.19654 0.98193 0.91316 1.38503 0.90104 1.17386 0.92072 0.91358 0.89561 1.21187 1.01621 0.95901 1.03520 1.17923 0.94232 0.92929 0.94853 1.20920 0.96887 0.97331 1.00328 1.20505 0.99565 0.93008 1.00627 1.20354 0.99998 0.96747 1.03599 1.20772 0.95526 0.96875 0.97142 1.18441 0.97902 0.92816 1.02637 1.19122 0.96611 0.90689 0.99508 1.19022 0.96714 0.93712 0.92688 1.21219 0.97491 0.96608 0.94984 1.21027 1.03196 0.92988 0.99840 1.17737 1.01845 0.81805 0.92676 1.91457 1.86990 1.45175 1.89015 1.21025 1.03455 0.99201 0.93560 1.21225 0.97397 0.91364 1.00357 1.21179 1.00395 0.91974 1.00400 0.90526 0.86052 0.87280 0.88104 0.88187 0.87445 0.84736 0.85048 0.85080 0.84735 0.87808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.98 11.01 55.55 0.61 -18.37 16 2 C 0.07 1.73 5.09 -17.34 -0.09 1.65 16 3 Si 0.91 17.49 29.60 -169.99 -5.03 12.45 16 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 6 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 7 C -0.45 -10.96 8.99 -37.82 -0.34 -11.30 16 8 H 0.08 1.87 7.91 -52.49 -0.42 1.46 16 9 C 0.10 2.43 5.55 -107.03 -0.59 1.84 16 10 C -0.20 -5.02 8.38 -38.31 -0.32 -5.34 16 11 C 0.00 0.02 5.74 -106.88 -0.61 -0.59 16 12 C -0.14 -2.82 9.78 -39.32 -0.38 -3.21 16 13 C -0.12 -2.19 9.95 -39.94 -0.40 -2.59 16 14 C -0.19 -3.40 9.96 -39.82 -0.40 -3.80 16 15 C -0.09 -1.62 8.69 -39.61 -0.34 -1.97 16 16 C -0.12 -2.53 5.88 -104.66 -0.62 -3.14 16 17 C -0.06 -1.21 5.59 -103.13 -0.58 -1.79 16 18 C -0.02 -0.36 5.08 -104.91 -0.53 -0.90 16 19 C -0.08 -1.31 9.48 -39.24 -0.37 -1.68 16 20 C -0.15 -2.09 10.01 -39.56 -0.40 -2.48 16 21 C 0.08 1.10 7.30 -39.33 -0.29 0.82 16 22 F -0.15 -2.06 17.26 2.25 0.04 -2.02 16 23 C -0.15 -2.09 10.01 -39.57 -0.40 -2.48 16 24 C -0.09 -1.30 7.68 -39.23 -0.30 -1.60 16 25 C -0.12 -2.66 9.10 -39.05 -0.36 -3.02 16 26 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 27 H 0.12 3.14 6.16 -52.49 -0.32 2.81 16 28 H 0.11 2.12 8.06 -52.49 -0.42 1.69 16 29 H 0.10 1.57 8.06 -52.48 -0.42 1.14 16 30 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.11 1.83 5.71 -52.48 -0.30 1.53 16 32 H 0.13 1.99 8.04 -52.49 -0.42 1.57 16 33 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 35 H 0.13 1.97 7.33 -52.49 -0.38 1.59 16 36 H 0.10 2.10 8.00 -52.48 -0.42 1.68 16 LS Contribution 313.20 15.07 4.72 4.72 Total: -1.00 -25.72 313.20 -10.49 -36.21 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -3.51 Total: 8.58 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: -7.31 Total: -41.58 kcal Atomic # 7 Polarization: -18.98 SS G_CDS: 0.61 Total: -18.37 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.45 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -25.72 -10.49 -36.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239477844.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.789 kcal (2) G-P(sol) polarization free energy of solvation -25.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds