Wall clock time and date at job start Tue Mar 31 2020 06:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86799 * 119.99980 * 2 1 4 4 H 1.48501 * 109.46910 * 274.60675 * 3 2 1 5 5 H 1.48493 * 109.47326 * 34.60922 * 3 2 1 6 6 H 1.48501 * 109.46799 * 154.60939 * 3 2 1 7 7 C 1.39931 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00000 * 161.87778 * 7 2 1 9 9 C 1.41218 * 119.99638 * 341.87382 * 7 2 1 10 10 C 1.39967 * 119.48882 * 334.15232 * 9 7 2 11 11 C 1.39894 * 120.10906 * 179.97438 * 10 9 7 12 12 C 1.40861 * 121.13948 * 180.02562 * 11 10 9 13 13 C 1.36199 * 119.60147 * 179.28018 * 12 11 10 14 14 C 1.39244 * 120.94213 * 0.72363 * 13 12 11 15 15 C 1.36539 * 120.97907 * 359.48744 * 14 13 12 16 16 C 1.39801 * 119.73976 * 0.02562 * 15 14 13 17 17 C 1.46318 * 121.16716 * 179.97438 * 16 15 14 18 18 C 1.48167 * 120.34088 * 0.02562 * 17 16 15 19 19 C 1.39460 * 120.10171 * 129.72266 * 18 17 16 20 20 C 1.37941 * 119.88967 * 179.97438 * 19 18 17 21 21 C 1.38578 * 120.10714 * 0.02562 * 20 19 18 22 22 F 1.35100 * 119.89502 * 179.97438 * 21 20 19 23 23 C 1.38569 * 120.21195 * 0.22485 * 21 20 19 24 24 C 1.37948 * 120.10568 * 359.49939 * 23 21 20 25 25 C 1.36689 * 119.31885 * 179.75038 * 17 16 15 26 26 H 0.97000 * 119.99990 * 0.02562 * 1 2 3 27 27 H 1.07992 * 119.94604 * 359.97438 * 10 9 7 28 28 H 1.07994 * 120.19577 * 359.97313 * 12 11 10 29 29 H 1.08004 * 119.52695 * 180.20513 * 13 12 11 30 30 H 1.08000 * 119.50797 * 179.50298 * 14 13 12 31 31 H 1.08004 * 120.13037 * 180.02562 * 15 14 13 32 32 H 1.08001 * 120.05698 * 0.02562 * 19 18 17 33 33 H 1.08001 * 119.94923 * 179.97438 * 20 19 18 34 34 H 1.08003 * 119.94761 * 179.72417 * 23 21 20 35 35 H 1.07999 * 120.05405 * 180.25203 * 24 23 21 36 36 H 1.08004 * 119.70619 * 180.27698 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3924 2.1026 -1.3956 5 1 1.4920 2.6226 0.7952 6 1 3.5852 1.4139 0.6003 7 6 2.0080 -1.2118 0.0005 8 1 3.0478 -1.2352 -0.2904 9 6 1.3544 -2.4043 0.3816 10 6 0.2526 -2.3412 1.2425 11 6 -0.4049 -3.5143 1.6279 12 6 -1.5160 -3.4760 2.4929 13 6 -2.1417 -4.6361 2.8361 14 6 -1.6897 -5.8625 2.3560 15 6 -0.6130 -5.9362 1.5195 16 6 0.0491 -4.7660 1.1368 17 6 1.2063 -4.8087 0.2423 18 6 1.7017 -6.1040 -0.2793 19 6 1.9277 -6.2675 -1.6457 20 6 2.3894 -7.4751 -2.1265 21 6 2.6282 -8.5251 -1.2542 22 9 3.0799 -9.7062 -1.7298 23 6 2.4002 -8.3691 0.1037 24 6 1.9439 -7.1634 0.5947 25 6 1.8222 -3.6409 -0.1116 26 1 -0.4850 0.8400 -0.0004 27 1 -0.0904 -1.3854 1.6099 28 1 -1.8765 -2.5315 2.8726 29 1 -2.9956 -4.6050 3.4967 30 1 -2.1984 -6.7688 2.6495 31 1 -0.2743 -6.8948 1.1550 32 1 1.7422 -5.4496 -2.3263 33 1 2.5643 -7.6029 -3.1845 34 1 2.5836 -9.1917 0.7792 35 1 1.7704 -7.0415 1.6537 36 1 2.6741 -3.6648 -0.7751 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239477844.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:40 Heat of formation + Delta-G solvation = -3.997605 kcal Electronic energy + Delta-G solvation = -21525.345115 eV Core-core repulsion = 18238.145758 eV Total energy + Delta-G solvation = -3287.199357 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.86655 -40.90297 -39.48957 -37.40781 -35.30244 -33.51441 -32.19640 -31.39329 -30.91618 -29.07152 -27.06707 -24.37903 -24.03318 -23.29683 -22.76096 -21.56124 -19.39087 -18.61438 -17.80380 -17.74889 -17.07765 -16.72103 -16.57432 -16.40103 -15.87704 -15.28142 -14.92109 -14.61180 -14.48651 -14.32781 -14.15762 -13.92530 -13.75240 -13.44187 -13.11521 -13.08008 -12.77663 -12.56439 -12.48218 -12.10469 -12.01670 -11.65071 -11.38080 -11.26190 -10.95115 -10.42119 -10.06648 -9.56779 -9.24803 -8.68417 -8.36356 -6.30523 -0.23404 0.28347 0.32429 0.59639 1.35009 1.39348 1.51707 1.55904 2.17117 2.30009 2.65314 3.03471 3.27790 3.69092 3.77161 3.86830 3.95868 4.11613 4.29524 4.32820 4.35192 4.44800 4.64115 4.75949 4.86656 4.92804 4.97073 5.00280 5.13884 5.17028 5.18487 5.25386 5.29892 5.53741 5.60276 5.72110 5.73735 5.86576 5.91979 5.97925 6.08101 6.24725 6.44840 6.65515 6.86462 6.95349 8.28698 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.004969 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.264048 B = 5633.429776 C = 7292.174931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.035 3.965 3 Si 0.979 3.021 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.486 4.486 8 H 0.082 0.918 9 C 0.076 3.924 10 C -0.234 4.234 11 C -0.022 4.022 12 C -0.162 4.162 13 C -0.107 4.107 14 C -0.179 4.179 15 C -0.087 4.087 16 C -0.136 4.136 17 C -0.044 4.044 18 C -0.047 4.047 19 C -0.089 4.089 20 C -0.146 4.146 21 C 0.081 3.919 22 F -0.144 7.144 23 C -0.144 4.144 24 C -0.084 4.084 25 C -0.147 4.147 26 H 0.288 0.712 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.156 0.844 34 H 0.161 0.839 35 H 0.140 0.860 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.585 -10.941 0.223 11.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.181 4.181 3 Si 0.800 3.200 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.514 4.514 8 H 0.100 0.900 9 C 0.074 3.926 10 C -0.254 4.254 11 C -0.022 4.022 12 C -0.180 4.180 13 C -0.125 4.125 14 C -0.197 4.197 15 C -0.105 4.105 16 C -0.137 4.137 17 C -0.044 4.044 18 C -0.047 4.047 19 C -0.108 4.108 20 C -0.164 4.164 21 C 0.062 3.938 22 F -0.123 7.123 23 C -0.162 4.162 24 C -0.102 4.102 25 C -0.166 4.166 26 H 0.099 0.901 27 H 0.116 0.884 28 H 0.127 0.873 29 H 0.155 0.845 30 H 0.159 0.841 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.174 0.826 34 H 0.178 0.822 35 H 0.157 0.843 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.403 -10.833 0.174 10.925 hybrid contribution 0.243 1.161 -0.216 1.205 sum 1.646 -9.672 -0.042 9.811 Atomic orbital electron populations 1.69910 1.09139 1.30614 1.34319 1.26747 0.95401 1.04532 0.91409 0.85234 0.79276 0.76073 0.79449 1.18567 1.19291 1.18092 1.19903 0.98519 0.92447 1.40554 0.90032 1.17713 0.92426 0.92686 0.89804 1.21077 1.03118 0.95805 1.05400 1.18220 0.95131 0.93151 0.95733 1.21069 0.97147 0.98741 1.01081 1.20937 0.99638 0.92183 0.99711 1.20873 0.99030 0.98034 1.01746 1.21045 0.95558 0.96784 0.97089 1.18812 0.98586 0.93264 1.03040 1.19424 0.95350 0.91869 0.97734 1.18938 0.99082 0.92825 0.93848 1.21230 0.97732 0.97441 0.94349 1.21216 1.01980 0.92019 1.01193 1.17875 1.01148 0.81825 0.92990 1.91476 1.86848 1.44932 1.89002 1.21252 1.01919 0.99189 0.93852 1.21235 0.97412 0.91256 1.00288 1.21243 1.01515 0.91978 1.01817 0.90091 0.88426 0.87299 0.84492 0.84149 0.85049 0.84948 0.82637 0.82178 0.84267 0.87039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.40 11.01 21.82 0.24 -42.16 16 2 C 0.04 1.74 5.09 85.25 0.43 2.17 16 3 Si 0.98 37.35 29.60 68.60 2.03 39.38 16 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.27 -9.87 7.11 99.48 0.71 -9.17 16 6 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 7 C -0.49 -25.37 8.99 23.41 0.21 -25.16 16 8 H 0.08 4.04 7.91 -2.91 -0.02 4.02 16 9 C 0.08 4.02 5.55 -21.42 -0.12 3.90 16 10 C -0.23 -12.48 8.38 23.09 0.19 -12.29 16 11 C -0.02 -1.06 5.74 -21.33 -0.12 -1.19 16 12 C -0.16 -6.79 9.78 22.44 0.22 -6.57 16 13 C -0.11 -3.67 9.95 22.04 0.22 -3.45 16 14 C -0.18 -5.78 9.96 22.11 0.22 -5.56 16 15 C -0.09 -3.11 8.69 22.25 0.19 -2.92 16 16 C -0.14 -5.91 5.88 -19.89 -0.12 -6.03 16 17 C -0.04 -1.82 5.59 -18.90 -0.11 -1.93 16 18 C -0.05 -1.56 5.08 -20.05 -0.10 -1.66 16 19 C -0.09 -2.65 9.48 22.49 0.21 -2.44 16 20 C -0.15 -3.61 10.01 22.28 0.22 -3.39 16 21 C 0.08 1.99 7.30 22.43 0.16 2.15 16 22 F -0.14 -3.49 17.26 44.97 0.78 -2.71 16 23 C -0.14 -3.37 10.01 22.28 0.22 -3.15 16 24 C -0.08 -2.34 7.68 22.50 0.17 -2.17 16 25 C -0.15 -6.83 9.10 22.61 0.21 -6.62 16 26 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 27 H 0.10 5.53 6.16 -2.91 -0.02 5.51 16 28 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 29 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 30 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 31 H 0.13 4.03 5.71 -2.91 -0.02 4.01 16 32 H 0.13 3.91 8.04 -2.91 -0.02 3.89 16 33 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 34 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 35 H 0.14 3.72 7.33 -2.91 -0.02 3.70 16 36 H 0.11 4.79 8.00 -2.91 -0.02 4.76 16 Total: -1.00 -59.10 313.20 6.48 -52.62 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 1.11 Total: 29.18 kcal Atomic # 6 Polarization: -78.63 SS G_CDS: 2.33 Total: -76.31 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.24 Total: -42.16 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.78 Total: -2.71 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Total: -59.10 6.48 -52.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239477844.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.618 kcal (2) G-P(sol) polarization free energy of solvation -59.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds