Wall clock time and date at job start Tue Mar 31 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86794 * 119.99709 * 2 1 4 4 H 1.48503 * 109.47284 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47271 * 300.00316 * 3 2 1 6 6 H 1.48508 * 109.47145 * 60.00516 * 3 2 1 7 7 C 1.39923 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00245 * 162.91372 * 7 2 1 9 9 C 1.41221 * 120.00338 * 342.91245 * 7 2 1 10 10 C 1.39961 * 119.48768 * 333.28542 * 9 7 2 11 11 C 1.39889 * 120.11285 * 179.97438 * 10 9 7 12 12 C 1.40857 * 121.14428 * 179.97438 * 11 10 9 13 13 C 1.36190 * 119.60454 * 180.02562 * 12 11 10 14 14 C 1.39243 * 120.94862 * 0.02562 * 13 12 11 15 15 C 1.36546 * 120.97572 * 359.97438 * 14 13 12 16 16 C 1.39812 * 119.73600 * 0.02562 * 15 14 13 17 17 C 1.46307 * 121.16198 * 179.97438 * 16 15 14 18 18 C 1.48179 * 120.33880 * 359.75523 * 17 16 15 19 19 C 1.39470 * 120.12498 * 129.99478 * 18 17 16 20 20 C 1.37978 * 119.92292 * 179.97438 * 19 18 17 21 21 C 1.38318 * 120.15636 * 359.97438 * 20 19 18 22 22 C 1.38538 * 120.24277 * 0.02562 * 21 20 19 23 23 F 1.35107 * 119.96168 * 180.02562 * 22 21 20 24 24 C 1.38238 * 120.08031 * 359.74899 * 22 21 20 25 25 C 1.36669 * 119.32291 * 180.02562 * 17 16 15 26 26 H 0.97000 * 120.00683 * 359.97438 * 1 2 3 27 27 H 1.08006 * 119.94293 * 0.02562 * 10 9 7 28 28 H 1.08003 * 120.20058 * 0.05519 * 12 11 10 29 29 H 1.08002 * 119.52652 * 180.02562 * 13 12 11 30 30 H 1.07996 * 119.51505 * 179.97438 * 14 13 12 31 31 H 1.07998 * 120.12982 * 179.97438 * 15 14 13 32 32 H 1.08008 * 120.03543 * 359.97438 * 19 18 17 33 33 H 1.07996 * 119.91969 * 179.97438 * 20 19 18 34 34 H 1.07999 * 119.87937 * 180.02562 * 21 20 19 35 35 H 1.07995 * 120.08384 * 180.24813 * 24 22 21 36 36 H 1.08000 * 119.70798 * 179.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3465 -0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0080 -1.2117 -0.0005 8 1 3.0522 -1.2323 -0.2753 9 6 1.3487 -2.4080 0.3583 10 6 0.2448 -2.3553 1.2170 11 6 -0.4183 -3.5322 1.5806 12 6 -1.5311 -3.5045 2.4437 13 6 -2.1529 -4.6693 2.7774 14 6 -1.7041 -5.8892 2.2780 15 6 -0.6285 -5.9523 1.4392 16 6 0.0358 -4.7776 1.0738 17 6 1.1918 -4.8090 0.1776 18 6 1.6874 -6.0980 -0.3597 19 6 1.9174 -6.2440 -1.7276 20 6 2.3794 -7.4459 -2.2233 21 6 2.6156 -8.5061 -1.3669 22 6 2.3895 -8.3684 -0.0071 23 9 2.6226 -9.4075 0.8244 24 6 1.9311 -7.1672 0.5009 25 6 1.8133 -3.6380 -0.1545 26 1 -0.4851 0.8400 0.0004 27 1 -0.0962 -1.4044 1.5990 28 1 -1.8895 -2.5651 2.8381 29 1 -3.0063 -4.6466 3.4390 30 1 -2.2143 -6.7989 2.5582 31 1 -0.2918 -6.9059 1.0602 32 1 1.7340 -5.4173 -2.3979 33 1 2.5571 -7.5591 -3.2825 34 1 2.9776 -9.4447 -1.7597 35 1 1.7586 -7.0585 1.5614 36 1 2.6674 -3.6540 -0.8153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239537479.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:42 Heat of formation + Delta-G solvation = 4.799527 kcal Electronic energy + Delta-G solvation = -21629.812446 eV Core-core repulsion = 18342.994561 eV Total energy + Delta-G solvation = -3286.817885 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.73587 -39.42898 -38.15343 -35.76291 -33.73765 -32.11391 -30.41934 -29.93910 -29.52844 -27.73452 -25.36929 -23.15724 -22.53299 -21.83988 -21.18813 -20.07310 -17.92482 -16.76829 -16.25177 -16.22281 -15.86352 -15.64254 -15.40641 -14.99541 -14.47454 -13.85098 -13.64287 -13.32374 -13.06606 -12.78953 -12.56854 -12.35059 -12.21721 -11.85962 -11.70232 -11.51098 -11.27828 -11.06420 -10.93327 -10.85239 -10.49936 -10.09070 -9.75595 -9.63069 -9.31906 -8.88113 -8.64969 -8.38074 -7.56950 -6.93487 -6.75490 -4.46867 1.15198 1.38225 1.78696 2.22710 2.90760 2.99634 3.04062 3.15135 3.78944 3.84504 3.98305 4.40146 4.73015 4.91037 5.02728 5.22587 5.40010 5.51033 5.57716 5.66957 5.71531 5.84261 6.00432 6.15379 6.22606 6.25719 6.32257 6.45381 6.53224 6.57046 6.70202 6.84730 6.93965 6.95799 7.08467 7.20545 7.32460 7.38042 7.45778 7.59819 7.83022 7.98783 8.07407 8.43481 8.65636 8.71407 10.01170 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015312 B = 0.005085 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.242718 B = 5505.138597 C = 6958.446171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.449 4.449 8 H 0.081 0.919 9 C 0.097 3.903 10 C -0.198 4.198 11 C 0.000 4.000 12 C -0.135 4.135 13 C -0.119 4.119 14 C -0.186 4.186 15 C -0.086 4.086 16 C -0.115 4.115 17 C -0.063 4.063 18 C 0.017 3.983 19 C -0.123 4.123 20 C -0.091 4.091 21 C -0.169 4.169 22 C 0.094 3.906 23 F -0.145 7.145 24 C -0.148 4.148 25 C -0.117 4.117 26 H 0.283 0.717 27 H 0.122 0.878 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.137 0.863 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.877 -8.241 -1.539 8.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.146 4.146 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.477 4.477 8 H 0.099 0.901 9 C 0.095 3.905 10 C -0.218 4.218 11 C 0.000 4.000 12 C -0.154 4.154 13 C -0.137 4.137 14 C -0.205 4.205 15 C -0.104 4.104 16 C -0.116 4.116 17 C -0.064 4.064 18 C 0.017 3.983 19 C -0.141 4.141 20 C -0.109 4.109 21 C -0.188 4.188 22 C 0.075 3.925 23 F -0.124 7.124 24 C -0.167 4.167 25 C -0.135 4.135 26 H 0.094 0.906 27 H 0.140 0.860 28 H 0.128 0.872 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.125 0.875 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.155 0.845 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.696 -8.107 -1.536 8.423 hybrid contribution 0.258 0.594 0.098 0.655 sum 1.954 -7.512 -1.438 7.894 Atomic orbital electron populations 1.69830 1.07623 1.29506 1.33361 1.25917 0.94782 1.01463 0.92437 0.86246 0.80986 0.80759 0.78750 1.18273 1.19855 1.19532 1.19674 0.97846 0.91127 1.39053 0.90063 1.17396 0.92180 0.91386 0.89546 1.21207 1.01390 0.95871 1.03379 1.17924 0.94226 0.92936 0.94949 1.20922 0.96899 0.97313 1.00236 1.20507 0.99647 0.92989 1.00570 1.20367 0.99949 0.96859 1.03328 1.20784 0.95507 0.96841 0.97259 1.18440 0.97874 0.92864 1.02419 1.19110 0.96856 0.90661 0.99726 1.18776 0.94344 0.92774 0.92432 1.21424 1.00014 0.97921 0.94741 1.20891 0.98175 0.92344 0.99524 1.21050 1.05345 1.00713 0.91693 1.17612 1.02145 0.84769 0.87998 1.91473 1.92464 1.56729 1.71722 1.21334 1.02392 0.91613 1.01317 1.21182 1.00207 0.91926 1.00209 0.90581 0.85994 0.87217 0.88047 0.88139 0.87488 0.85052 0.85245 0.85327 0.84547 0.87711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.09 11.00 55.55 0.61 -18.47 16 2 C 0.07 1.72 5.10 -17.35 -0.09 1.64 16 3 Si 0.91 17.55 29.59 -169.99 -5.03 12.52 16 4 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 5 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 6 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 7 C -0.45 -10.99 8.99 -37.82 -0.34 -11.33 16 8 H 0.08 1.89 7.90 -52.49 -0.41 1.48 16 9 C 0.10 2.41 5.54 -107.02 -0.59 1.82 16 10 C -0.20 -4.95 8.38 -38.32 -0.32 -5.27 16 11 C 0.00 0.00 5.74 -106.88 -0.61 -0.61 16 12 C -0.14 -2.83 9.78 -39.33 -0.38 -3.22 16 13 C -0.12 -2.23 9.95 -39.94 -0.40 -2.62 16 14 C -0.19 -3.45 9.96 -39.82 -0.40 -3.84 16 15 C -0.09 -1.69 8.69 -39.60 -0.34 -2.03 16 16 C -0.12 -2.53 5.88 -104.66 -0.62 -3.15 16 17 C -0.06 -1.32 5.59 -103.14 -0.58 -1.90 16 18 C 0.02 0.30 5.07 -104.92 -0.53 -0.24 16 19 C -0.12 -1.87 9.49 -39.22 -0.37 -2.25 16 20 C -0.09 -1.16 10.03 -39.65 -0.40 -1.55 16 21 C -0.17 -2.18 10.02 -39.44 -0.40 -2.58 16 22 C 0.09 1.40 7.29 -39.47 -0.29 1.11 16 23 F -0.15 -2.17 17.27 2.25 0.04 -2.13 16 24 C -0.15 -2.43 7.66 -39.15 -0.30 -2.73 16 25 C -0.12 -2.58 9.11 -39.05 -0.36 -2.94 16 26 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 27 H 0.12 3.16 6.19 -52.48 -0.32 2.84 16 28 H 0.11 2.14 8.06 -52.48 -0.42 1.72 16 29 H 0.10 1.60 8.06 -52.49 -0.42 1.17 16 30 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 31 H 0.11 1.92 5.73 -52.49 -0.30 1.62 16 32 H 0.13 1.93 8.04 -52.48 -0.42 1.50 16 33 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 35 H 0.14 2.26 7.35 -52.49 -0.39 1.88 16 36 H 0.10 2.12 8.01 -52.49 -0.42 1.70 16 LS Contribution 313.27 15.07 4.72 4.72 Total: -1.00 -25.95 313.27 -10.49 -36.44 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -3.52 Total: 8.62 kcal Atomic # 6 Polarization: -34.38 SS G_CDS: -7.31 Total: -41.69 kcal Atomic # 7 Polarization: -19.09 SS G_CDS: 0.61 Total: -18.47 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -25.95 -10.49 -36.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239537479.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.238 kcal (2) G-P(sol) polarization free energy of solvation -25.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds