Wall clock time and date at job start Tue Mar 31 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86794 * 119.99709 * 2 1 4 4 H 1.48503 * 109.47284 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47271 * 300.00316 * 3 2 1 6 6 H 1.48508 * 109.47145 * 60.00516 * 3 2 1 7 7 C 1.39923 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00245 * 162.91372 * 7 2 1 9 9 C 1.41221 * 120.00338 * 342.91245 * 7 2 1 10 10 C 1.39961 * 119.48768 * 333.28542 * 9 7 2 11 11 C 1.39889 * 120.11285 * 179.97438 * 10 9 7 12 12 C 1.40857 * 121.14428 * 179.97438 * 11 10 9 13 13 C 1.36190 * 119.60454 * 180.02562 * 12 11 10 14 14 C 1.39243 * 120.94862 * 0.02562 * 13 12 11 15 15 C 1.36546 * 120.97572 * 359.97438 * 14 13 12 16 16 C 1.39812 * 119.73600 * 0.02562 * 15 14 13 17 17 C 1.46307 * 121.16198 * 179.97438 * 16 15 14 18 18 C 1.48179 * 120.33880 * 359.75523 * 17 16 15 19 19 C 1.39470 * 120.12498 * 129.99478 * 18 17 16 20 20 C 1.37978 * 119.92292 * 179.97438 * 19 18 17 21 21 C 1.38318 * 120.15636 * 359.97438 * 20 19 18 22 22 C 1.38538 * 120.24277 * 0.02562 * 21 20 19 23 23 F 1.35107 * 119.96168 * 180.02562 * 22 21 20 24 24 C 1.38238 * 120.08031 * 359.74899 * 22 21 20 25 25 C 1.36669 * 119.32291 * 180.02562 * 17 16 15 26 26 H 0.97000 * 120.00683 * 359.97438 * 1 2 3 27 27 H 1.08006 * 119.94293 * 0.02562 * 10 9 7 28 28 H 1.08003 * 120.20058 * 0.05519 * 12 11 10 29 29 H 1.08002 * 119.52652 * 180.02562 * 13 12 11 30 30 H 1.07996 * 119.51505 * 179.97438 * 14 13 12 31 31 H 1.07998 * 120.12982 * 179.97438 * 15 14 13 32 32 H 1.08008 * 120.03543 * 359.97438 * 19 18 17 33 33 H 1.07996 * 119.91969 * 179.97438 * 20 19 18 34 34 H 1.07999 * 119.87937 * 180.02562 * 21 20 19 35 35 H 1.07995 * 120.08384 * 180.24813 * 24 22 21 36 36 H 1.08000 * 119.70798 * 179.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3465 -0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8835 2.3964 1.2126 7 6 2.0080 -1.2117 -0.0005 8 1 3.0522 -1.2323 -0.2753 9 6 1.3487 -2.4080 0.3583 10 6 0.2448 -2.3553 1.2170 11 6 -0.4183 -3.5322 1.5806 12 6 -1.5311 -3.5045 2.4437 13 6 -2.1529 -4.6693 2.7774 14 6 -1.7041 -5.8892 2.2780 15 6 -0.6285 -5.9523 1.4392 16 6 0.0358 -4.7776 1.0738 17 6 1.1918 -4.8090 0.1776 18 6 1.6874 -6.0980 -0.3597 19 6 1.9174 -6.2440 -1.7276 20 6 2.3794 -7.4459 -2.2233 21 6 2.6156 -8.5061 -1.3669 22 6 2.3895 -8.3684 -0.0071 23 9 2.6226 -9.4075 0.8244 24 6 1.9311 -7.1672 0.5009 25 6 1.8133 -3.6380 -0.1545 26 1 -0.4851 0.8400 0.0004 27 1 -0.0962 -1.4044 1.5990 28 1 -1.8895 -2.5651 2.8381 29 1 -3.0063 -4.6466 3.4390 30 1 -2.2143 -6.7989 2.5582 31 1 -0.2918 -6.9059 1.0602 32 1 1.7340 -5.4173 -2.3979 33 1 2.5571 -7.5591 -3.2825 34 1 2.9776 -9.4447 -1.7597 35 1 1.7586 -7.0585 1.5614 36 1 2.6674 -3.6540 -0.8153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239537479.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:42 Heat of formation + Delta-G solvation = -4.167940 kcal Electronic energy + Delta-G solvation = -21630.201305 eV Core-core repulsion = 18342.994561 eV Total energy + Delta-G solvation = -3287.206743 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.88927 -40.91728 -39.49969 -37.43227 -35.35769 -33.67000 -31.66195 -31.43726 -31.09940 -29.27655 -27.10756 -24.58859 -23.78872 -23.35157 -22.77828 -21.60485 -19.50738 -18.11788 -17.87083 -17.64268 -17.08454 -16.99187 -16.66435 -16.51754 -16.07949 -15.23101 -14.98643 -14.83653 -14.37516 -14.29439 -14.13512 -13.90828 -13.77358 -13.30221 -13.12313 -12.89069 -12.69324 -12.65085 -12.51262 -12.25462 -12.04414 -11.71943 -11.39819 -11.25756 -10.99442 -10.48062 -9.89502 -9.65331 -9.27337 -8.68527 -8.41494 -6.32311 -0.23526 0.22168 0.35101 0.56267 1.34631 1.39194 1.52480 1.53795 2.17234 2.28417 2.66251 3.01263 3.23554 3.66389 3.74391 3.92088 4.07734 4.10760 4.22959 4.28327 4.32918 4.42738 4.60600 4.72310 4.79061 4.90512 4.91892 5.06011 5.12856 5.17435 5.19784 5.25630 5.35485 5.51677 5.56073 5.68730 5.71439 5.83297 5.93063 5.94860 6.06104 6.21902 6.41109 6.63657 6.84964 6.93051 8.28949 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015312 B = 0.005085 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.242718 B = 5505.138597 C = 6958.446171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.255 1.255 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.484 4.484 8 H 0.082 0.918 9 C 0.075 3.925 10 C -0.230 4.230 11 C -0.023 4.023 12 C -0.160 4.160 13 C -0.107 4.107 14 C -0.179 4.179 15 C -0.090 4.090 16 C -0.136 4.136 17 C -0.050 4.050 18 C -0.010 4.010 19 C -0.128 4.128 20 C -0.077 4.077 21 C -0.152 4.152 22 C 0.087 3.913 23 F -0.146 7.146 24 C -0.155 4.155 25 C -0.141 4.141 26 H 0.289 0.711 27 H 0.099 0.901 28 H 0.112 0.888 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.125 0.875 32 H 0.131 0.869 33 H 0.170 0.830 34 H 0.164 0.836 35 H 0.126 0.874 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.997 -10.882 -2.317 11.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.182 4.182 3 Si 0.802 3.198 4 H -0.179 1.179 5 H -0.189 1.189 6 H -0.192 1.192 7 C -0.512 4.512 8 H 0.101 0.899 9 C 0.072 3.928 10 C -0.250 4.250 11 C -0.023 4.023 12 C -0.178 4.178 13 C -0.125 4.125 14 C -0.197 4.197 15 C -0.108 4.108 16 C -0.137 4.137 17 C -0.050 4.050 18 C -0.011 4.011 19 C -0.146 4.146 20 C -0.095 4.095 21 C -0.170 4.170 22 C 0.068 3.932 23 F -0.124 7.124 24 C -0.174 4.174 25 C -0.160 4.160 26 H 0.099 0.901 27 H 0.117 0.883 28 H 0.130 0.870 29 H 0.157 0.843 30 H 0.157 0.843 31 H 0.143 0.857 32 H 0.149 0.851 33 H 0.188 0.812 34 H 0.182 0.818 35 H 0.144 0.856 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.811 -10.768 -2.310 11.161 hybrid contribution 0.135 1.128 0.371 1.195 sum 1.946 -9.640 -1.939 10.024 Atomic orbital electron populations 1.69906 1.09131 1.30590 1.34507 1.26754 0.95433 1.04553 0.91415 0.85170 0.79565 0.76211 0.78893 1.17860 1.18949 1.19208 1.19920 0.98149 0.92183 1.40972 0.89942 1.17734 0.92516 0.92730 0.89772 1.21093 1.02916 0.95742 1.05270 1.18223 0.95147 0.93101 0.95834 1.21089 0.97083 0.98760 1.00892 1.20931 0.99758 0.92059 0.99703 1.20867 0.99003 0.98224 1.01575 1.21020 0.95693 0.96628 0.97440 1.18816 0.98659 0.93295 1.02940 1.19432 0.95609 0.91947 0.98025 1.18632 0.97001 0.91647 0.93783 1.21556 1.00013 0.99326 0.93681 1.21281 0.96008 0.90690 1.01481 1.21475 1.02981 1.02024 0.90512 1.17706 1.02388 0.84161 0.88955 1.91475 1.92470 1.56504 1.71982 1.21209 1.03236 0.92156 1.00755 1.21249 1.01277 0.91857 1.01569 0.90074 0.88266 0.87010 0.84312 0.84305 0.85684 0.85110 0.81247 0.81829 0.85558 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.46 11.00 21.82 0.24 -42.22 16 2 C 0.03 1.69 5.10 85.25 0.44 2.13 16 3 Si 0.98 37.33 29.59 68.60 2.03 39.36 16 4 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 5 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 6 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 7 C -0.48 -25.26 8.99 23.41 0.21 -25.05 16 8 H 0.08 4.08 7.90 -2.91 -0.02 4.06 16 9 C 0.07 3.97 5.54 -21.42 -0.12 3.86 16 10 C -0.23 -12.38 8.38 23.09 0.19 -12.19 16 11 C -0.02 -1.12 5.74 -21.33 -0.12 -1.24 16 12 C -0.16 -6.83 9.78 22.43 0.22 -6.61 16 13 C -0.11 -3.79 9.95 22.03 0.22 -3.57 16 14 C -0.18 -6.11 9.96 22.12 0.22 -5.89 16 15 C -0.09 -3.43 8.69 22.26 0.19 -3.24 16 16 C -0.14 -6.14 5.88 -19.89 -0.12 -6.25 16 17 C -0.05 -2.15 5.59 -18.90 -0.11 -2.26 16 18 C -0.01 -0.36 5.07 -20.06 -0.10 -0.47 16 19 C -0.13 -3.68 9.49 22.51 0.21 -3.46 16 20 C -0.08 -1.64 10.03 22.23 0.22 -1.41 16 21 C -0.15 -3.25 10.02 22.36 0.22 -3.02 16 22 C 0.09 2.36 7.29 22.34 0.16 2.52 16 23 F -0.15 -3.97 17.27 44.97 0.78 -3.19 16 24 C -0.15 -4.92 7.66 22.55 0.17 -4.74 16 25 C -0.14 -6.62 9.11 22.61 0.21 -6.41 16 26 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 27 H 0.10 5.64 6.19 -2.91 -0.02 5.62 16 28 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 29 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 30 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 31 H 0.13 4.27 5.73 -2.91 -0.02 4.25 16 32 H 0.13 3.73 8.04 -2.91 -0.02 3.71 16 33 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 34 H 0.16 2.43 8.06 -2.91 -0.02 2.40 16 35 H 0.13 4.17 7.35 -2.91 -0.02 4.15 16 36 H 0.11 4.92 8.01 -2.91 -0.02 4.90 16 Total: -1.00 -60.44 313.27 6.48 -53.96 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 1.11 Total: 29.40 kcal Atomic # 6 Polarization: -79.63 SS G_CDS: 2.33 Total: -77.30 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 0.24 Total: -42.22 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.78 Total: -3.19 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.36 kcal Total: -60.44 6.48 -53.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239537479.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.793 kcal (2) G-P(sol) polarization free energy of solvation -60.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds