Wall clock time and date at job start Tue Mar 31 2020 06:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86803 * 119.99707 * 2 1 4 4 H 1.48504 * 109.46684 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46992 * 299.99762 * 3 2 1 6 6 H 1.48498 * 109.47010 * 59.99840 * 3 2 1 7 7 C 1.40045 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00265 * 186.33358 * 7 2 1 9 9 C 1.41333 * 120.00096 * 6.33627 * 7 2 1 10 10 C 1.40861 * 120.14789 * 173.79424 * 9 7 2 11 11 N 1.31862 * 119.95934 * 180.02562 * 10 9 7 12 12 C 1.32211 * 120.28125 * 359.97438 * 11 10 9 13 13 C 1.39983 * 120.29974 * 0.02617 * 12 11 10 14 14 C 1.48313 * 119.98122 * 179.97438 * 13 12 11 15 15 C 1.39484 * 120.06855 * 180.02562 * 14 13 12 16 16 C 1.38053 * 120.11474 * 180.02562 * 15 14 13 17 17 C 1.38142 * 120.25623 * 359.97438 * 16 15 14 18 18 C 1.39387 * 120.12949 * 0.02562 * 17 16 15 19 19 C 1.48433 * 120.05611 * 180.02562 * 18 17 16 20 20 C 1.40841 * 126.03700 * 359.97438 * 19 18 17 21 21 C 1.35092 * 107.84975 * 179.97438 * 20 19 18 22 22 N 1.35039 * 107.97404 * 359.97438 * 21 20 19 23 23 H 0.97000 * 125.92641 * 180.02562 * 22 21 20 24 24 N 1.31612 * 126.03866 * 179.66566 * 19 18 17 25 25 C 1.39122 * 119.88516 * 0.02562 * 18 17 16 26 26 N 1.32541 * 120.03616 * 0.22861 * 13 12 11 27 27 H 0.96994 * 120.00132 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.02215 * 0.04279 * 10 9 7 29 29 H 1.08001 * 119.84452 * 179.97438 * 12 11 10 30 30 H 1.07996 * 119.93947 * 0.04296 * 15 14 13 31 31 H 1.08000 * 119.87639 * 179.71992 * 16 15 14 32 32 H 1.07999 * 119.93850 * 179.97438 * 17 16 15 33 33 H 1.07997 * 126.07699 * 359.95579 * 20 19 18 34 34 H 1.08004 * 126.01025 * 180.02562 * 21 20 19 35 35 H 1.08003 * 120.12412 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3464 0.0006 5 1 1.8825 2.3965 -1.2126 6 1 1.8825 2.3965 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0827 -1.2156 0.1037 9 6 1.3075 -2.4331 -0.1340 10 6 2.0151 -3.6440 -0.2651 11 7 1.3582 -4.7804 -0.3909 12 6 0.0361 -4.7893 -0.3941 13 6 -0.6785 -3.5926 -0.2646 14 6 -2.1616 -3.6107 -0.2696 15 6 -2.8755 -2.4193 -0.1412 16 6 -4.2559 -2.4351 -0.1453 17 6 -4.9379 -3.6291 -0.2769 18 6 -4.2350 -4.8258 -0.4059 19 6 -4.9695 -6.1079 -0.5478 20 6 -6.3692 -6.2631 -0.5678 21 6 -6.6379 -7.5790 -0.7130 22 7 -5.4620 -8.2391 -0.7837 23 1 -5.3525 -9.1971 -0.8893 24 7 -4.4279 -7.2997 -0.6830 25 6 -2.8438 -4.8166 -0.4015 26 7 -0.0306 -2.4428 -0.1425 27 1 -0.4850 0.8400 -0.0004 28 1 3.0951 -3.6418 -0.2623 29 1 -0.4949 -5.7240 -0.4980 30 1 -2.3473 -1.4828 -0.0387 31 1 -4.8048 -1.5108 -0.0411 32 1 -6.0179 -3.6356 -0.2790 33 1 -7.0982 -5.4709 -0.4819 34 1 -7.6204 -8.0246 -0.7644 35 1 -2.2953 -5.7415 -0.5016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240561280.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:49 Heat of formation + Delta-G solvation = 137.938353 kcal Electronic energy + Delta-G solvation = -21263.548430 eV Core-core repulsion = 18034.716591 eV Total energy + Delta-G solvation = -3228.831839 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.11111 -39.25670 -38.05976 -34.08684 -33.09957 -32.09263 -31.32233 -30.06783 -29.46682 -28.71193 -26.04366 -23.52810 -23.33955 -22.05103 -21.34468 -20.54827 -19.26870 -18.23556 -17.54546 -16.31632 -15.77554 -15.21734 -15.08495 -14.76243 -14.67161 -14.12054 -13.68972 -13.55263 -13.20165 -13.19213 -12.88452 -12.57919 -12.23559 -11.65251 -11.45176 -11.39269 -11.04189 -10.84646 -10.64789 -10.50709 -10.24469 -10.10666 -9.85082 -9.54073 -9.37847 -8.87300 -8.48726 -8.04242 -7.47628 -7.37649 -6.56410 -4.71808 1.26090 1.57123 2.01989 2.60754 2.81860 2.89655 3.01615 3.05914 3.15969 3.23191 3.82458 4.37408 4.54061 4.70735 4.72131 5.10052 5.35228 5.44500 5.53971 5.63050 5.74843 5.77365 5.88719 5.98250 6.04158 6.21658 6.37176 6.40393 6.50995 6.65909 6.80426 6.85923 6.98050 7.01231 7.12202 7.21284 7.34318 7.46781 7.63389 7.66027 8.01707 8.38079 8.62540 9.20945 9.77707 10.09490 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026043 B = 0.003772 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.882031 B = 7421.224778 C = 8481.950589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.068 3.932 3 Si 0.913 3.087 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.413 4.413 8 H 0.091 0.909 9 C 0.208 3.792 10 C -0.061 4.061 11 N -0.430 5.430 12 C -0.105 4.105 13 C 0.136 3.864 14 C -0.021 4.021 15 C -0.066 4.066 16 C -0.134 4.134 17 C -0.098 4.098 18 C -0.039 4.039 19 C 0.130 3.870 20 C -0.261 4.261 21 C 0.053 3.947 22 N -0.480 5.480 23 H 0.438 0.562 24 N -0.285 5.285 25 C -0.076 4.076 26 N -0.442 5.442 27 H 0.276 0.724 28 H 0.134 0.866 29 H 0.129 0.871 30 H 0.153 0.847 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.149 0.851 34 H 0.175 0.825 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.517 -5.920 -0.706 14.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.333 5.333 2 C -0.159 4.159 3 Si 0.737 3.263 4 H -0.182 1.182 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.445 4.445 8 H 0.109 0.891 9 C 0.081 3.919 10 C -0.231 4.231 11 N -0.141 5.141 12 C -0.263 4.263 13 C -0.011 4.011 14 C -0.023 4.023 15 C -0.086 4.086 16 C -0.152 4.152 17 C -0.118 4.118 18 C -0.041 4.041 19 C -0.035 4.035 20 C -0.291 4.291 21 C -0.094 4.094 22 N -0.188 5.188 23 H 0.281 0.719 24 N -0.108 5.108 25 C -0.097 4.097 26 N -0.159 5.159 27 H 0.087 0.913 28 H 0.152 0.848 29 H 0.147 0.853 30 H 0.170 0.830 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.167 0.833 34 H 0.192 0.808 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.644 -6.469 -0.785 14.225 hybrid contribution -0.482 0.554 -0.034 0.735 sum -13.126 -5.915 -0.819 14.420 Atomic orbital electron populations 1.70046 1.07410 1.28253 1.27590 1.26113 0.94984 1.01399 0.93371 0.86173 0.80875 0.80594 0.78693 1.18212 1.19658 1.19699 1.19658 0.95035 0.89130 1.40689 0.89059 1.19377 0.88748 0.93455 0.90281 1.23242 0.99328 0.89406 1.11090 1.67688 1.08813 1.30036 1.07610 1.22561 0.90646 0.97204 1.15906 1.20612 0.92493 0.91728 0.96264 1.18647 0.91557 0.92730 0.99358 1.21808 0.93269 0.99733 0.93760 1.21018 0.94485 0.97373 1.02330 1.21024 0.99279 0.91465 1.00037 1.17578 0.92131 0.89106 1.05254 1.20818 0.92325 0.91886 0.98484 1.21514 0.95248 0.96262 1.16036 1.22487 0.91711 0.93360 1.01847 1.46341 1.03747 1.09688 1.59060 0.71851 1.77616 1.10769 0.97834 1.24626 1.21315 0.92674 0.98063 0.97605 1.69504 1.08053 1.23101 1.15275 0.91267 0.84838 0.85325 0.82969 0.85936 0.86203 0.83350 0.80755 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.57 11.51 55.55 0.64 -16.93 16 2 C 0.07 1.62 5.49 -17.34 -0.10 1.52 16 3 Si 0.91 17.57 29.56 -169.99 -5.03 12.54 16 4 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 5 H -0.27 -5.19 7.11 56.52 0.40 -4.78 16 6 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.41 -10.51 9.15 -37.73 -0.35 -10.85 16 8 H 0.09 2.14 7.86 -52.49 -0.41 1.73 16 9 C 0.21 5.60 6.54 -84.83 -0.56 5.05 16 10 C -0.06 -1.54 10.98 -16.55 -0.18 -1.73 16 11 N -0.43 -10.98 10.47 -12.06 -0.13 -11.10 16 12 C -0.10 -2.56 10.61 -16.73 -0.18 -2.74 16 13 C 0.14 3.37 6.74 -82.76 -0.56 2.81 16 14 C -0.02 -0.46 5.87 -104.94 -0.62 -1.07 16 15 C -0.07 -1.31 9.57 -39.19 -0.38 -1.68 16 16 C -0.13 -2.12 10.02 -39.68 -0.40 -2.51 16 17 C -0.10 -1.44 9.57 -39.19 -0.38 -1.82 16 18 C -0.04 -0.64 5.87 -104.94 -0.62 -1.26 16 19 C 0.13 1.97 6.99 -82.78 -0.58 1.39 16 20 C -0.26 -3.03 10.17 -39.72 -0.40 -3.43 16 21 C 0.05 0.48 11.97 -17.26 -0.21 0.27 16 22 N -0.48 -5.08 7.35 30.42 0.22 -4.86 16 23 H 0.44 3.04 8.96 -182.62 -1.64 1.41 16 24 N -0.28 -4.37 12.36 33.43 0.41 -3.95 16 25 C -0.08 -1.44 9.06 -38.90 -0.35 -1.80 16 26 N -0.44 -11.86 7.16 -7.50 -0.05 -11.91 16 27 H 0.28 6.10 8.29 -40.82 -0.34 5.76 16 28 H 0.13 3.05 8.06 -52.49 -0.42 2.63 16 29 H 0.13 2.84 6.18 -52.49 -0.32 2.51 16 30 H 0.15 3.30 7.54 -52.49 -0.40 2.91 16 31 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.12 1.37 7.02 -52.49 -0.37 1.00 16 33 H 0.15 1.38 7.33 -52.49 -0.38 0.99 16 34 H 0.18 0.78 8.06 -52.48 -0.42 0.36 16 35 H 0.13 2.48 5.98 -52.48 -0.31 2.16 16 LS Contribution 311.68 15.07 4.70 4.70 Total: -1.00 -31.49 311.68 -9.31 -40.80 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -4.24 Total: 8.59 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -5.83 Total: -17.86 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 1.10 Total: -48.76 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.49 -9.31 -40.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240561280.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.734 kcal (2) G-P(sol) polarization free energy of solvation -31.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds