Wall clock time and date at job start Tue Mar 31 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86803 * 119.99707 * 2 1 4 4 H 1.48504 * 109.46684 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46992 * 299.99762 * 3 2 1 6 6 H 1.48498 * 109.47010 * 59.99840 * 3 2 1 7 7 C 1.40045 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00265 * 186.33358 * 7 2 1 9 9 C 1.41333 * 120.00096 * 6.33627 * 7 2 1 10 10 C 1.40861 * 120.14789 * 173.79424 * 9 7 2 11 11 N 1.31862 * 119.95934 * 180.02562 * 10 9 7 12 12 C 1.32211 * 120.28125 * 359.97438 * 11 10 9 13 13 C 1.39983 * 120.29974 * 0.02617 * 12 11 10 14 14 C 1.48313 * 119.98122 * 179.97438 * 13 12 11 15 15 C 1.39484 * 120.06855 * 180.02562 * 14 13 12 16 16 C 1.38053 * 120.11474 * 180.02562 * 15 14 13 17 17 C 1.38142 * 120.25623 * 359.97438 * 16 15 14 18 18 C 1.39387 * 120.12949 * 0.02562 * 17 16 15 19 19 C 1.48433 * 120.05611 * 180.02562 * 18 17 16 20 20 C 1.40841 * 126.03700 * 359.97438 * 19 18 17 21 21 C 1.35092 * 107.84975 * 179.97438 * 20 19 18 22 22 N 1.35039 * 107.97404 * 359.97438 * 21 20 19 23 23 H 0.97000 * 125.92641 * 180.02562 * 22 21 20 24 24 N 1.31612 * 126.03866 * 179.66566 * 19 18 17 25 25 C 1.39122 * 119.88516 * 0.02562 * 18 17 16 26 26 N 1.32541 * 120.03616 * 0.22861 * 13 12 11 27 27 H 0.96994 * 120.00132 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.02215 * 0.04279 * 10 9 7 29 29 H 1.08001 * 119.84452 * 179.97438 * 12 11 10 30 30 H 1.07996 * 119.93947 * 0.04296 * 15 14 13 31 31 H 1.08000 * 119.87639 * 179.71992 * 16 15 14 32 32 H 1.07999 * 119.93850 * 179.97438 * 17 16 15 33 33 H 1.07997 * 126.07699 * 359.95579 * 20 19 18 34 34 H 1.08004 * 126.01025 * 180.02562 * 21 20 19 35 35 H 1.08003 * 120.12412 * 180.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3464 0.0006 5 1 1.8825 2.3965 -1.2126 6 1 1.8825 2.3965 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0827 -1.2156 0.1037 9 6 1.3075 -2.4331 -0.1340 10 6 2.0151 -3.6440 -0.2651 11 7 1.3582 -4.7804 -0.3909 12 6 0.0361 -4.7893 -0.3941 13 6 -0.6785 -3.5926 -0.2646 14 6 -2.1616 -3.6107 -0.2696 15 6 -2.8755 -2.4193 -0.1412 16 6 -4.2559 -2.4351 -0.1453 17 6 -4.9379 -3.6291 -0.2769 18 6 -4.2350 -4.8258 -0.4059 19 6 -4.9695 -6.1079 -0.5478 20 6 -6.3692 -6.2631 -0.5678 21 6 -6.6379 -7.5790 -0.7130 22 7 -5.4620 -8.2391 -0.7837 23 1 -5.3525 -9.1971 -0.8893 24 7 -4.4279 -7.2997 -0.6830 25 6 -2.8438 -4.8166 -0.4015 26 7 -0.0306 -2.4428 -0.1425 27 1 -0.4850 0.8400 -0.0004 28 1 3.0951 -3.6418 -0.2623 29 1 -0.4949 -5.7240 -0.4980 30 1 -2.3473 -1.4828 -0.0387 31 1 -4.8048 -1.5108 -0.0411 32 1 -6.0179 -3.6356 -0.2790 33 1 -7.0982 -5.4709 -0.4819 34 1 -7.6204 -8.0246 -0.7644 35 1 -2.2953 -5.7415 -0.5016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240561280.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:48 Heat of formation + Delta-G solvation = 117.926630 kcal Electronic energy + Delta-G solvation = -21264.416204 eV Core-core repulsion = 18034.716591 eV Total energy + Delta-G solvation = -3229.699613 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.02700 -41.02769 -39.54789 -35.96427 -34.63950 -33.47155 -33.04681 -31.11676 -30.72662 -30.17017 -27.92522 -25.18460 -24.75160 -23.71135 -22.60876 -21.73739 -20.53549 -19.46926 -19.00611 -17.88564 -17.47001 -16.91144 -16.83996 -16.20869 -15.60562 -15.48162 -15.12266 -15.07441 -14.55448 -14.46123 -14.28725 -13.66516 -13.61737 -13.40063 -13.25192 -13.00145 -12.63477 -12.29591 -12.05538 -11.90968 -11.76165 -11.56310 -11.48353 -11.38409 -10.89151 -10.20835 -9.76267 -9.39254 -9.36161 -8.99905 -8.40817 -6.67666 -0.16176 0.15727 0.87485 1.11562 1.26114 1.42818 1.53793 1.59041 2.01969 2.04676 2.20004 2.73889 3.09775 3.46295 3.63131 3.82198 3.94468 4.00165 4.16240 4.31504 4.34959 4.42843 4.56711 4.64278 4.68595 4.83967 4.86102 5.00736 5.09897 5.13069 5.19462 5.22631 5.54260 5.57282 5.65028 5.73789 5.83129 6.08429 6.12601 6.46712 6.52992 6.69618 6.73230 7.25249 7.83999 8.30614 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026043 B = 0.003772 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.882031 B = 7421.224778 C = 8481.950589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.022 3.978 3 Si 0.996 3.004 4 H -0.252 1.252 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.433 4.433 8 H 0.104 0.896 9 C 0.175 3.825 10 C -0.084 4.084 11 N -0.439 5.439 12 C -0.125 4.125 13 C 0.130 3.870 14 C -0.054 4.054 15 C -0.086 4.086 16 C -0.121 4.121 17 C -0.077 4.077 18 C -0.037 4.037 19 C 0.101 3.899 20 C -0.277 4.277 21 C 0.077 3.923 22 N -0.471 5.471 23 H 0.452 0.548 24 N -0.336 5.336 25 C -0.085 4.085 26 N -0.467 5.467 27 H 0.287 0.713 28 H 0.152 0.848 29 H 0.145 0.855 30 H 0.126 0.874 31 H 0.159 0.841 32 H 0.167 0.833 33 H 0.174 0.826 34 H 0.229 0.771 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.730 -5.477 -0.766 17.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.202 4.202 3 Si 0.816 3.184 4 H -0.175 1.175 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.464 4.464 8 H 0.122 0.878 9 C 0.049 3.951 10 C -0.253 4.253 11 N -0.151 5.151 12 C -0.283 4.283 13 C -0.017 4.017 14 C -0.056 4.056 15 C -0.106 4.106 16 C -0.139 4.139 17 C -0.097 4.097 18 C -0.039 4.039 19 C -0.063 4.063 20 C -0.305 4.305 21 C -0.070 4.070 22 N -0.181 5.181 23 H 0.298 0.702 24 N -0.161 5.161 25 C -0.106 4.106 26 N -0.185 5.185 27 H 0.098 0.902 28 H 0.169 0.831 29 H 0.162 0.838 30 H 0.144 0.856 31 H 0.176 0.824 32 H 0.184 0.816 33 H 0.192 0.808 34 H 0.245 0.755 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.847 -6.057 -0.844 16.986 hybrid contribution 0.301 0.285 -0.024 0.415 sum -15.546 -5.772 -0.868 16.605 Atomic orbital electron populations 1.70131 1.09032 1.29968 1.26741 1.27109 0.95874 1.04778 0.92446 0.84938 0.79423 0.75177 0.78895 1.17513 1.19074 1.18845 1.20106 0.95865 0.89695 1.40747 0.87840 1.19883 0.89429 0.94627 0.91168 1.23482 1.00179 0.89268 1.12383 1.67665 1.09398 1.30222 1.07778 1.22849 0.90608 0.98077 1.16812 1.21195 0.94591 0.91260 0.94659 1.18626 0.89853 0.94444 1.02647 1.21687 0.95161 0.97990 0.95749 1.21341 0.92686 0.99489 1.00387 1.21487 1.01388 0.89880 0.96946 1.17883 0.91162 0.91172 1.03643 1.20843 0.94107 0.91114 1.00217 1.21885 0.93729 0.98247 1.16662 1.23301 0.92842 0.92513 0.98330 1.46413 1.03620 1.10145 1.57880 0.70162 1.77525 1.13338 0.98941 1.26257 1.21236 0.94125 0.96626 0.98608 1.69537 1.08196 1.24070 1.16697 0.90239 0.83117 0.83825 0.85641 0.82385 0.81563 0.80811 0.75501 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.43 11.51 21.84 0.25 -37.17 16 2 C 0.02 1.06 5.49 85.29 0.47 1.53 16 3 Si 1.00 35.88 29.56 68.60 2.03 37.91 16 4 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 5 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 6 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 7 C -0.43 -22.72 9.15 23.47 0.21 -22.51 16 8 H 0.10 4.96 7.86 -2.91 -0.02 4.94 16 9 C 0.18 9.93 6.54 40.24 0.26 10.19 16 10 C -0.08 -4.50 10.98 85.33 0.94 -3.56 16 11 N -0.44 -23.66 10.47 -192.06 -2.01 -25.67 16 12 C -0.13 -6.54 10.61 85.06 0.90 -5.64 16 13 C 0.13 6.88 6.74 42.14 0.28 7.16 16 14 C -0.05 -2.44 5.87 -20.07 -0.12 -2.56 16 15 C -0.09 -3.51 9.57 22.53 0.22 -3.30 16 16 C -0.12 -3.63 10.02 22.20 0.22 -3.40 16 17 C -0.08 -2.06 9.57 22.52 0.22 -1.84 16 18 C -0.04 -1.19 5.87 -20.07 -0.12 -1.31 16 19 C 0.10 2.89 6.99 42.53 0.30 3.18 16 20 C -0.28 -5.31 10.17 22.18 0.23 -5.09 16 21 C 0.08 1.05 11.97 83.47 1.00 2.05 16 22 N -0.47 -8.72 7.35 -57.67 -0.42 -9.14 16 23 H 0.45 5.16 8.96 -213.34 -1.91 3.25 16 24 N -0.34 -10.03 12.36 -48.15 -0.60 -10.63 16 25 C -0.09 -3.38 9.06 22.71 0.21 -3.17 16 26 N -0.47 -26.59 7.16 -177.64 -1.27 -27.86 16 27 H 0.29 12.87 8.29 -92.71 -0.77 12.10 16 28 H 0.15 7.23 8.06 -2.91 -0.02 7.21 16 29 H 0.14 6.81 6.18 -2.91 -0.02 6.79 16 30 H 0.13 5.76 7.54 -2.91 -0.02 5.74 16 31 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 32 H 0.17 2.89 7.02 -2.91 -0.02 2.87 16 33 H 0.17 2.28 7.33 -2.91 -0.02 2.26 16 34 H 0.23 0.52 8.06 -2.91 -0.02 0.50 16 35 H 0.12 4.82 5.98 -2.91 -0.02 4.80 16 Total: -1.00 -74.28 311.68 2.44 -71.84 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: -0.75 Total: 28.99 kcal Atomic # 6 Polarization: -33.47 SS G_CDS: 5.22 Total: -28.26 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -4.05 Total: -110.48 kcal Atomic # 14 Polarization: 35.88 SS G_CDS: 2.03 Total: 37.91 kcal Total: -74.28 2.44 -71.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240561280.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.767 kcal (2) G-P(sol) polarization free energy of solvation -74.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds