Wall clock time and date at job start Tue Mar 31 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30662 * 1 3 3 Si 1.86797 * 119.99933 * 2 1 4 4 H 1.48498 * 109.47488 * 240.00207 * 3 2 1 5 5 H 1.48500 * 109.47235 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47156 * 120.00297 * 3 2 1 7 7 C 1.40140 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00398 * 179.97438 * 7 2 1 9 9 C 1.41102 * 119.99995 * 0.02562 * 7 2 1 10 10 N 1.33638 * 119.13488 * 180.02562 * 9 7 2 11 11 C 1.31593 * 120.82821 * 180.02562 * 10 9 7 12 12 C 1.40414 * 119.09439 * 359.97438 * 11 10 9 13 13 C 1.47950 * 120.79150 * 179.97438 * 12 11 10 14 14 C 1.39746 * 120.08683 * 0.02562 * 13 12 11 15 15 C 1.37980 * 120.08900 * 180.02562 * 14 13 12 16 16 C 1.38207 * 120.27567 * 359.97365 * 15 14 13 17 17 C 1.39465 * 120.17675 * 359.97438 * 16 15 14 18 18 C 1.48433 * 120.04171 * 180.02562 * 17 16 15 19 19 C 1.40837 * 126.04556 * 5.00289 * 18 17 16 20 20 C 1.35084 * 107.85495 * 179.97438 * 19 18 17 21 21 N 1.35034 * 107.97473 * 0.02562 * 20 19 18 22 22 H 0.97001 * 125.93072 * 180.02562 * 21 20 19 23 23 N 1.31627 * 126.03196 * 184.95081 * 18 17 16 24 24 C 1.39036 * 119.90717 * 0.27822 * 17 16 15 25 25 C 1.40427 * 118.41989 * 0.25373 * 12 11 10 26 26 N 1.31581 * 119.09442 * 359.51348 * 25 12 11 27 27 H 0.96999 * 119.99790 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.44617 * 179.97438 * 11 10 9 29 29 H 1.07999 * 119.95227 * 359.97438 * 14 13 12 30 30 H 1.07996 * 119.85812 * 179.97438 * 15 14 13 31 31 H 1.07998 * 119.91243 * 179.97438 * 16 15 14 32 32 H 1.08009 * 126.06877 * 0.21286 * 19 18 17 33 33 H 1.08001 * 126.01159 * 180.02562 * 20 19 18 34 34 H 1.08007 * 120.13546 * 179.70374 * 24 17 16 35 35 H 1.08003 * 120.44978 * 179.72619 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 3.0943 1.6965 -1.2125 5 1 1.2756 2.7464 0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0074 -1.2136 -0.0005 8 1 3.0874 -1.2137 -0.0010 9 6 1.3019 -2.4356 -0.0016 10 7 1.9875 -3.5827 -0.0016 11 6 1.3635 -4.7413 -0.0031 12 6 -0.0405 -4.7607 -0.0042 13 6 -0.7803 -6.0419 -0.0065 14 6 -0.0834 -7.2532 -0.0070 15 6 -0.7733 -8.4482 -0.0097 16 6 -2.1554 -8.4548 -0.0113 17 6 -2.8622 -7.2526 -0.0097 18 6 -4.3465 -7.2632 -0.0108 19 6 -5.1671 -8.4037 0.0859 20 6 -6.4534 -7.9927 0.0494 21 7 -6.4579 -6.6473 -0.0661 22 1 -7.2452 -6.0828 -0.1150 23 7 -5.1283 -6.2082 -0.1013 24 6 -2.1746 -6.0442 -0.0123 25 6 -0.7257 -3.5350 -0.0091 26 7 -0.0344 -2.4154 -0.0027 27 1 -0.4850 0.8401 0.0004 28 1 1.9238 -5.6646 -0.0035 29 1 0.9966 -7.2540 -0.0062 30 1 -0.2310 -9.3821 -0.0105 31 1 -2.6894 -9.3935 -0.0138 32 1 -4.8282 -9.4252 0.1772 33 1 -7.3249 -8.6284 0.1033 34 1 -2.7183 -5.1109 -0.0159 35 1 -1.8055 -3.5116 -0.0145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240562246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:57 Heat of formation + Delta-G solvation = 140.901680 kcal Electronic energy + Delta-G solvation = -20973.621722 eV Core-core repulsion = 17744.918382 eV Total energy + Delta-G solvation = -3228.703340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.10374 -39.24988 -38.06765 -34.09519 -32.84908 -32.11423 -31.56836 -30.08283 -29.51660 -28.80350 -26.07188 -23.87178 -22.83756 -22.26248 -21.33597 -20.48999 -19.33372 -18.21037 -17.98133 -16.42193 -16.01041 -15.25495 -15.02610 -14.66396 -14.50845 -14.03543 -13.67899 -13.51358 -13.16542 -13.09723 -12.79085 -12.61417 -12.31135 -12.16538 -11.44485 -11.34620 -11.19988 -10.84446 -10.73156 -10.51058 -10.38470 -10.12725 -9.64068 -9.25428 -9.20165 -8.92465 -8.85230 -8.10139 -7.40274 -7.34787 -6.67707 -4.81173 1.24364 1.63684 2.01117 2.62963 2.82693 2.93421 2.97853 3.00695 3.00792 3.24007 3.77223 4.34430 4.55564 4.65970 4.73514 5.20363 5.36529 5.45288 5.51534 5.62796 5.73466 5.75012 5.84975 5.88933 5.95001 6.05901 6.23606 6.26664 6.50219 6.54819 6.73162 6.84735 6.88596 6.91974 7.05537 7.22238 7.40145 7.44599 7.58849 7.67220 8.01214 8.35240 8.43081 9.00112 9.96539 10.15820 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022234 B = 0.003464 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.042310 B = 8081.315607 C = 9329.293583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.695 5.695 2 C 0.060 3.940 3 Si 0.923 3.077 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.376 4.376 8 H 0.096 0.904 9 C 0.379 3.621 10 N -0.594 5.594 11 C 0.189 3.811 12 C -0.331 4.331 13 C 0.036 3.964 14 C -0.137 4.137 15 C -0.110 4.110 16 C -0.134 4.134 17 C -0.014 4.014 18 C 0.125 3.875 19 C -0.261 4.261 20 C 0.052 3.948 21 N -0.480 5.480 22 H 0.438 0.562 23 N -0.282 5.282 24 C -0.113 4.113 25 C 0.183 3.817 26 N -0.508 5.508 27 H 0.280 0.720 28 H 0.133 0.867 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.148 0.852 33 H 0.175 0.825 34 H 0.126 0.874 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.127 -12.407 0.120 16.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.315 5.315 2 C -0.169 4.169 3 Si 0.746 3.254 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.409 4.409 8 H 0.114 0.886 9 C 0.147 3.853 10 N -0.312 5.312 11 C 0.013 3.987 12 C -0.341 4.341 13 C 0.034 3.966 14 C -0.156 4.156 15 C -0.128 4.128 16 C -0.154 4.154 17 C -0.016 4.016 18 C -0.039 4.039 19 C -0.290 4.290 20 C -0.095 4.095 21 N -0.188 5.188 22 H 0.282 0.718 23 N -0.105 5.105 24 C -0.133 4.133 25 C 0.006 3.994 26 N -0.224 5.224 27 H 0.091 0.909 28 H 0.150 0.850 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.166 0.834 33 H 0.192 0.808 34 H 0.144 0.856 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.827 -9.922 0.018 13.965 hybrid contribution -0.816 -0.923 0.057 1.234 sum -10.643 -10.845 0.074 15.195 Atomic orbital electron populations 1.70117 1.07471 1.28827 1.25112 1.26238 0.95139 1.01775 0.93768 0.86116 0.79917 0.79044 0.80309 1.18524 1.19904 1.18529 1.19484 0.95085 0.87851 1.38461 0.88555 1.19966 0.86013 0.90867 0.88457 1.68650 1.40778 0.98467 1.23305 1.22681 0.90476 0.95843 0.89663 1.19731 0.95232 0.93114 1.25975 1.18640 0.91952 0.92426 0.93607 1.21239 0.99764 0.91738 1.02884 1.20819 0.93711 0.97613 1.00638 1.20842 0.93960 0.96352 1.04233 1.17644 0.87089 0.93942 1.02913 1.20896 0.93564 0.90762 0.98723 1.21514 0.91466 0.99912 1.16097 1.22486 0.99527 0.85594 1.01890 1.46361 1.07428 1.05864 1.59148 0.71823 1.77647 0.86549 1.21723 1.24603 1.21242 0.93508 0.97135 1.01417 1.23099 0.99166 0.87931 0.89221 1.69359 1.08050 1.26774 1.18202 0.90865 0.84977 0.86230 0.86404 0.86543 0.83385 0.80766 0.85648 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.90 11.40 55.56 0.63 -17.27 16 2 C 0.06 1.47 5.50 -17.34 -0.10 1.37 16 3 Si 0.92 17.94 29.56 -169.99 -5.02 12.91 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.38 -10.08 9.35 -37.78 -0.35 -10.43 16 8 H 0.10 2.45 7.85 -52.49 -0.41 2.04 16 9 C 0.38 10.63 7.35 -158.17 -1.16 9.47 16 10 N -0.59 -15.64 10.34 -12.41 -0.13 -15.76 16 11 C 0.19 4.32 10.70 -16.84 -0.18 4.14 16 12 C -0.33 -7.42 5.94 -104.28 -0.62 -8.04 16 13 C 0.04 0.68 5.88 -104.91 -0.62 0.07 16 14 C -0.14 -2.24 9.45 -39.11 -0.37 -2.61 16 15 C -0.11 -1.53 10.02 -39.69 -0.40 -1.93 16 16 C -0.13 -1.88 9.57 -39.14 -0.37 -2.25 16 17 C -0.01 -0.23 5.87 -104.94 -0.62 -0.84 16 18 C 0.13 1.91 6.98 -82.77 -0.58 1.33 16 19 C -0.26 -3.03 10.17 -39.72 -0.40 -3.44 16 20 C 0.05 0.47 11.97 -17.26 -0.21 0.27 16 21 N -0.48 -5.20 7.35 30.42 0.22 -4.98 16 22 H 0.44 3.19 8.96 -182.62 -1.64 1.55 16 23 N -0.28 -4.39 12.37 33.43 0.41 -3.98 16 24 C -0.11 -2.08 9.09 -38.84 -0.35 -2.44 16 25 C 0.18 4.48 10.70 -16.84 -0.18 4.30 16 26 N -0.51 -14.06 7.83 -12.41 -0.10 -14.16 16 27 H 0.28 6.45 8.29 -40.82 -0.34 6.11 16 28 H 0.13 2.52 6.33 -52.49 -0.33 2.19 16 29 H 0.12 1.78 6.28 -52.49 -0.33 1.45 16 30 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.12 1.30 7.04 -52.49 -0.37 0.93 16 32 H 0.15 1.37 7.35 -52.48 -0.39 0.99 16 33 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.13 2.40 6.08 -52.48 -0.32 2.08 16 35 H 0.13 2.93 6.33 -52.48 -0.33 2.60 16 LS Contribution 309.32 15.07 4.66 4.66 Total: -1.00 -32.43 309.32 -9.92 -42.36 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -4.10 Total: 7.25 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: -6.51 Total: -11.04 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 1.04 Total: -56.14 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.02 Total: 12.91 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.43 -9.92 -42.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240562246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.258 kcal (2) G-P(sol) polarization free energy of solvation -32.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds