Wall clock time and date at job start Tue Mar 31 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30662 * 1 3 3 Si 1.86797 * 119.99933 * 2 1 4 4 H 1.48498 * 109.47488 * 240.00207 * 3 2 1 5 5 H 1.48500 * 109.47235 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47156 * 120.00297 * 3 2 1 7 7 C 1.40140 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00398 * 179.97438 * 7 2 1 9 9 C 1.41102 * 119.99995 * 0.02562 * 7 2 1 10 10 N 1.33638 * 119.13488 * 180.02562 * 9 7 2 11 11 C 1.31593 * 120.82821 * 180.02562 * 10 9 7 12 12 C 1.40414 * 119.09439 * 359.97438 * 11 10 9 13 13 C 1.47950 * 120.79150 * 179.97438 * 12 11 10 14 14 C 1.39746 * 120.08683 * 0.02562 * 13 12 11 15 15 C 1.37980 * 120.08900 * 180.02562 * 14 13 12 16 16 C 1.38207 * 120.27567 * 359.97365 * 15 14 13 17 17 C 1.39465 * 120.17675 * 359.97438 * 16 15 14 18 18 C 1.48433 * 120.04171 * 180.02562 * 17 16 15 19 19 C 1.40837 * 126.04556 * 5.00289 * 18 17 16 20 20 C 1.35084 * 107.85495 * 179.97438 * 19 18 17 21 21 N 1.35034 * 107.97473 * 0.02562 * 20 19 18 22 22 H 0.97001 * 125.93072 * 180.02562 * 21 20 19 23 23 N 1.31627 * 126.03196 * 184.95081 * 18 17 16 24 24 C 1.39036 * 119.90717 * 0.27822 * 17 16 15 25 25 C 1.40427 * 118.41989 * 0.25373 * 12 11 10 26 26 N 1.31581 * 119.09442 * 359.51348 * 25 12 11 27 27 H 0.96999 * 119.99790 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.44617 * 179.97438 * 11 10 9 29 29 H 1.07999 * 119.95227 * 359.97438 * 14 13 12 30 30 H 1.07996 * 119.85812 * 179.97438 * 15 14 13 31 31 H 1.07998 * 119.91243 * 179.97438 * 16 15 14 32 32 H 1.08009 * 126.06877 * 0.21286 * 19 18 17 33 33 H 1.08001 * 126.01159 * 180.02562 * 20 19 18 34 34 H 1.08007 * 120.13546 * 179.70374 * 24 17 16 35 35 H 1.08003 * 120.44978 * 179.72619 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 3.0943 1.6965 -1.2125 5 1 1.2756 2.7464 0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0074 -1.2136 -0.0005 8 1 3.0874 -1.2137 -0.0010 9 6 1.3019 -2.4356 -0.0016 10 7 1.9875 -3.5827 -0.0016 11 6 1.3635 -4.7413 -0.0031 12 6 -0.0405 -4.7607 -0.0042 13 6 -0.7803 -6.0419 -0.0065 14 6 -0.0834 -7.2532 -0.0070 15 6 -0.7733 -8.4482 -0.0097 16 6 -2.1554 -8.4548 -0.0113 17 6 -2.8622 -7.2526 -0.0097 18 6 -4.3465 -7.2632 -0.0108 19 6 -5.1671 -8.4037 0.0859 20 6 -6.4534 -7.9927 0.0494 21 7 -6.4579 -6.6473 -0.0661 22 1 -7.2452 -6.0828 -0.1150 23 7 -5.1283 -6.2082 -0.1013 24 6 -2.1746 -6.0442 -0.0123 25 6 -0.7257 -3.5350 -0.0091 26 7 -0.0344 -2.4154 -0.0027 27 1 -0.4850 0.8401 0.0004 28 1 1.9238 -5.6646 -0.0035 29 1 0.9966 -7.2540 -0.0062 30 1 -0.2310 -9.3821 -0.0105 31 1 -2.6894 -9.3935 -0.0138 32 1 -4.8282 -9.4252 0.1772 33 1 -7.3249 -8.6284 0.1033 34 1 -2.7183 -5.1109 -0.0159 35 1 -1.8055 -3.5116 -0.0145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240562246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:57 Heat of formation + Delta-G solvation = 120.326408 kcal Electronic energy + Delta-G solvation = -20974.513932 eV Core-core repulsion = 17744.918382 eV Total energy + Delta-G solvation = -3229.595551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.02579 -41.01283 -39.49117 -35.89525 -34.17309 -33.93607 -33.04746 -31.12136 -30.71260 -30.29737 -27.82588 -25.39320 -24.45166 -23.73996 -22.60218 -21.65620 -20.57121 -19.82888 -19.05759 -18.01187 -17.61657 -16.91786 -16.41427 -16.08631 -15.61099 -15.34512 -15.06239 -14.88565 -14.57874 -14.40298 -14.35399 -13.87035 -13.66699 -13.59198 -13.14115 -12.92760 -12.76879 -12.39740 -11.99965 -11.95464 -11.60595 -11.51389 -11.25889 -11.06059 -11.02196 -10.45494 -9.77335 -9.34250 -9.31557 -8.93012 -8.51856 -6.75750 -0.06110 0.22971 0.97744 1.07129 1.21824 1.37713 1.53125 1.54140 2.03432 2.04617 2.16050 2.67815 3.18466 3.60924 3.86110 3.87732 3.88434 3.90764 4.14057 4.23125 4.33262 4.37697 4.49961 4.62443 4.71350 4.79325 4.85378 4.96578 5.09175 5.18533 5.24321 5.28819 5.55806 5.58943 5.71640 5.79108 5.91915 6.06100 6.18575 6.43390 6.51358 6.51515 6.72709 7.08834 8.12141 8.26896 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022234 B = 0.003464 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.042310 B = 8081.315607 C = 9329.293583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.738 5.738 2 C 0.018 3.982 3 Si 1.006 2.994 4 H -0.255 1.255 5 H -0.262 1.262 6 H -0.255 1.255 7 C -0.418 4.418 8 H 0.097 0.903 9 C 0.350 3.650 10 N -0.616 5.616 11 C 0.176 3.824 12 C -0.313 4.313 13 C 0.000 4.000 14 C -0.135 4.135 15 C -0.101 4.101 16 C -0.113 4.113 17 C -0.025 4.025 18 C 0.097 3.903 19 C -0.276 4.276 20 C 0.076 3.924 21 N -0.473 5.473 22 H 0.451 0.549 23 N -0.339 5.339 24 C -0.128 4.128 25 C 0.158 3.842 26 N -0.540 5.540 27 H 0.288 0.712 28 H 0.173 0.827 29 H 0.135 0.865 30 H 0.163 0.837 31 H 0.156 0.844 32 H 0.175 0.825 33 H 0.228 0.772 34 H 0.102 0.898 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.229 -15.794 0.186 19.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.359 5.359 2 C -0.206 4.206 3 Si 0.823 3.177 4 H -0.179 1.179 5 H -0.185 1.185 6 H -0.179 1.179 7 C -0.452 4.452 8 H 0.115 0.885 9 C 0.116 3.884 10 N -0.335 5.335 11 C 0.003 3.997 12 C -0.323 4.323 13 C -0.001 4.001 14 C -0.153 4.153 15 C -0.119 4.119 16 C -0.132 4.132 17 C -0.026 4.026 18 C -0.066 4.066 19 C -0.305 4.305 20 C -0.071 4.071 21 N -0.183 5.183 22 H 0.297 0.703 23 N -0.164 5.164 24 C -0.148 4.148 25 C -0.017 4.017 26 N -0.257 5.257 27 H 0.099 0.901 28 H 0.190 0.810 29 H 0.153 0.847 30 H 0.180 0.820 31 H 0.174 0.826 32 H 0.192 0.808 33 H 0.245 0.755 34 H 0.120 0.880 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.969 -13.374 0.083 17.297 hybrid contribution -0.760 -0.280 0.037 0.811 sum -11.729 -13.654 0.119 18.000 Atomic orbital electron populations 1.70199 1.09234 1.30255 1.26235 1.27244 0.95939 1.05073 0.92390 0.84921 0.78443 0.73829 0.80471 1.17889 1.18550 1.17890 1.19805 0.95346 0.88879 1.41151 0.88509 1.20398 0.86478 0.92011 0.89474 1.68669 1.41275 0.99112 1.24481 1.23313 0.91066 0.96300 0.88996 1.20039 0.95439 0.94042 1.22745 1.18574 0.92236 0.92038 0.97281 1.21490 1.00661 0.91449 1.01740 1.21297 0.93850 0.98252 0.98457 1.21359 0.94274 0.96896 1.00719 1.17943 0.88369 0.93852 1.02482 1.21037 0.93233 0.92320 1.00051 1.21885 0.91754 1.00089 1.16785 1.23309 1.00583 0.84868 0.98377 1.46433 1.06498 1.07154 1.58180 0.70270 1.77561 0.88767 1.23405 1.26632 1.21168 0.93406 0.97601 1.02658 1.23387 0.99681 0.88622 0.89960 1.69307 1.08376 1.28271 1.19759 0.90140 0.81041 0.84749 0.81993 0.82601 0.80807 0.75526 0.88034 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -40.12 11.40 21.85 0.25 -39.87 16 2 C 0.02 0.93 5.50 85.33 0.47 1.40 16 3 Si 1.01 37.85 29.56 68.60 2.03 39.88 16 4 H -0.25 -9.25 7.11 99.48 0.71 -8.54 16 5 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 6 H -0.25 -9.24 7.11 99.48 0.71 -8.54 16 7 C -0.42 -23.72 9.35 23.44 0.22 -23.50 16 8 H 0.10 5.21 7.85 -2.91 -0.02 5.19 16 9 C 0.35 20.86 7.35 134.91 0.99 21.85 16 10 N -0.62 -33.90 10.34 -193.17 -2.00 -35.89 16 11 C 0.18 8.27 10.70 85.26 0.91 9.18 16 12 C -0.31 -14.64 5.94 -19.64 -0.12 -14.76 16 13 C 0.00 0.01 5.88 -20.05 -0.12 -0.11 16 14 C -0.13 -4.09 9.45 22.57 0.21 -3.88 16 15 C -0.10 -2.37 10.02 22.20 0.22 -2.15 16 16 C -0.11 -2.73 9.57 22.56 0.22 -2.51 16 17 C -0.02 -0.77 5.87 -20.07 -0.12 -0.89 16 18 C 0.10 2.84 6.98 42.53 0.30 3.13 16 19 C -0.28 -5.44 10.17 22.18 0.23 -5.22 16 20 C 0.08 1.09 11.97 83.47 1.00 2.09 16 21 N -0.47 -9.37 7.35 -57.68 -0.42 -9.79 16 22 H 0.45 5.82 8.96 -213.34 -1.91 3.90 16 23 N -0.34 -10.57 12.37 -48.15 -0.60 -11.17 16 24 C -0.13 -4.87 9.09 22.75 0.21 -4.67 16 25 C 0.16 8.31 10.70 85.26 0.91 9.22 16 26 N -0.54 -32.01 7.83 -193.17 -1.51 -33.52 16 27 H 0.29 13.91 8.29 -92.71 -0.77 13.14 16 28 H 0.17 6.40 6.33 -2.91 -0.02 6.38 16 29 H 0.13 3.61 6.28 -2.91 -0.02 3.59 16 30 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 31 H 0.16 2.56 7.04 -2.91 -0.02 2.54 16 32 H 0.17 2.33 7.35 -2.91 -0.02 2.31 16 33 H 0.23 0.69 8.06 -2.91 -0.02 0.66 16 34 H 0.10 4.23 6.08 -2.91 -0.02 4.22 16 35 H 0.14 6.77 6.33 -2.91 -0.02 6.76 16 Total: -1.00 -78.10 309.32 2.54 -75.57 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -0.74 Total: 25.61 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 5.53 Total: -10.81 kcal Atomic # 7 Polarization: -125.96 SS G_CDS: -4.28 Total: -130.24 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Total: -78.10 2.54 -75.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240562246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.892 kcal (2) G-P(sol) polarization free energy of solvation -78.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds