Wall clock time and date at job start Tue Mar 31 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30797 * 1 3 3 Si 1.86804 * 120.00415 * 2 1 4 4 H 1.48497 * 109.47017 * 240.00241 * 3 2 1 5 5 H 1.48505 * 109.46790 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47150 * 119.99881 * 3 2 1 7 7 C 1.40043 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00462 * 164.40849 * 7 2 1 9 9 C 1.40789 * 119.99883 * 344.40112 * 7 2 1 10 10 C 1.40806 * 120.30448 * 332.97763 * 9 7 2 11 11 C 1.36329 * 120.01910 * 179.97438 * 10 9 7 12 12 C 1.39235 * 120.66368 * 359.97438 * 11 10 9 13 13 F 1.35100 * 119.68872 * 180.02562 * 12 11 10 14 14 C 1.38354 * 120.61940 * 359.78658 * 12 11 10 15 15 C 1.39109 * 119.95098 * 0.45175 * 14 12 11 16 16 C 1.47796 * 120.32169 * 179.81571 * 15 14 12 17 17 C 1.40680 * 119.75799 * 129.71748 * 16 15 14 18 18 C 1.35688 * 120.84859 * 180.02562 * 17 16 15 19 19 C 1.40758 * 120.02647 * 0.02562 * 18 17 16 20 20 C 1.40444 * 121.02905 * 179.97438 * 19 18 17 21 21 C 1.36178 * 119.72672 * 180.02562 * 20 19 18 22 22 C 1.39351 * 121.01157 * 0.02562 * 21 20 19 23 23 C 1.36109 * 120.94726 * 359.97438 * 22 21 20 24 24 C 1.40677 * 119.65996 * 0.02562 * 23 22 21 25 25 C 1.38614 * 119.75291 * 309.69200 * 16 15 14 26 26 H 0.97006 * 119.99340 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.98999 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.67092 * 180.02562 * 11 10 9 29 29 H 1.08006 * 120.02273 * 180.25531 * 14 12 11 30 30 H 1.08006 * 119.57769 * 359.97438 * 17 16 15 31 31 H 1.07994 * 119.98494 * 179.97438 * 18 17 16 32 32 H 1.08004 * 120.13833 * 0.04996 * 20 19 18 33 33 H 1.07999 * 119.49347 * 180.02562 * 21 20 19 34 34 H 1.07999 * 119.52820 * 180.02562 * 22 21 20 35 35 H 1.08001 * 120.16913 * 180.27110 * 23 22 21 36 36 H 1.07998 * 120.27774 * 0.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.0958 1.6963 -1.2125 5 1 1.2771 2.7465 -0.0006 6 1 3.0958 1.6963 1.2125 7 6 2.0082 -1.2128 -0.0005 8 1 3.0584 -1.2300 -0.2519 9 6 1.3431 -2.4098 0.3268 10 6 0.2155 -2.3884 1.1698 11 6 -0.4244 -3.5508 1.4826 12 6 0.0249 -4.7673 0.9756 13 9 -0.6245 -5.9073 1.2980 14 6 1.1271 -4.8190 0.1410 15 6 1.8024 -3.6490 -0.1909 16 6 2.9832 -3.6952 -1.0785 17 6 3.0575 -2.8325 -2.1872 18 6 4.1309 -2.8565 -3.0169 19 6 5.1888 -3.7528 -2.7742 20 6 6.3095 -3.7959 -3.6195 21 6 7.3176 -4.6739 -3.3601 22 6 7.2562 -5.5347 -2.2660 23 6 6.1864 -5.5220 -1.4246 24 6 5.1257 -4.6286 -1.6606 25 6 4.0096 -4.5879 -0.8121 26 1 -0.4849 0.8402 -0.0004 27 1 -0.1425 -1.4508 1.5688 28 1 -1.2890 -3.5279 2.1294 29 1 1.4648 -5.7674 -0.2501 30 1 2.2493 -2.1426 -2.3810 31 1 4.1732 -2.1883 -3.8642 32 1 6.3718 -3.1352 -4.4716 33 1 8.1778 -4.7036 -4.0124 34 1 8.0695 -6.2212 -2.0825 35 1 6.1539 -6.1916 -0.5778 36 1 3.9490 -5.2487 0.0400 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240909508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:17 Heat of formation + Delta-G solvation = 1.142053 kcal Electronic energy + Delta-G solvation = -21663.755370 eV Core-core repulsion = 18376.778885 eV Total energy + Delta-G solvation = -3286.976485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.55378 -39.84993 -37.84513 -35.68886 -33.83455 -32.37461 -31.08051 -29.68978 -29.02950 -27.89359 -25.23826 -23.25385 -22.53424 -21.64428 -20.94644 -20.28067 -17.57279 -17.11850 -16.58612 -15.99212 -15.58849 -15.11050 -14.62334 -14.34896 -14.30371 -14.12133 -13.65518 -13.17588 -13.02541 -12.90477 -12.78231 -12.27495 -12.20200 -12.06915 -11.55597 -11.32494 -11.20244 -11.11807 -10.70280 -10.69289 -10.49837 -10.35443 -10.04863 -9.61170 -9.52872 -9.36103 -8.24939 -7.71325 -7.52920 -7.22544 -6.98076 -4.56228 0.94443 1.43315 2.37831 2.55624 2.71611 2.94822 2.97203 3.03566 3.52038 3.75285 4.33644 4.60123 4.97820 5.12089 5.24442 5.33477 5.45067 5.49323 5.60828 5.76103 5.83018 5.91662 5.98769 6.02623 6.12177 6.24219 6.39091 6.53874 6.69275 6.70034 6.78137 6.80481 6.85719 6.99012 7.06273 7.22718 7.24639 7.28312 7.46139 7.62025 7.69316 7.80357 7.98476 8.32467 8.57881 8.65567 9.90484 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.012041 B = 0.006121 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.851751 B = 4573.568780 C = 6533.753054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.441 4.441 8 H 0.087 0.913 9 C 0.124 3.876 10 C -0.135 4.135 11 C -0.123 4.123 12 C -0.046 4.046 13 F -0.173 7.173 14 C -0.093 4.093 15 C -0.173 4.173 16 C 0.031 3.969 17 C -0.076 4.076 18 C -0.127 4.127 19 C -0.063 4.063 20 C -0.103 4.103 21 C -0.136 4.136 22 C -0.128 4.128 23 C -0.108 4.108 24 C -0.043 4.043 25 C -0.135 4.135 26 H 0.286 0.714 27 H 0.128 0.872 28 H 0.101 0.899 29 H 0.104 0.896 30 H 0.133 0.867 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.052 -2.688 -3.922 9.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.144 4.144 3 Si 0.732 3.268 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.470 4.470 8 H 0.105 0.895 9 C 0.121 3.879 10 C -0.154 4.154 11 C -0.142 4.142 12 C -0.066 4.066 13 F -0.152 7.152 14 C -0.112 4.112 15 C -0.175 4.175 16 C 0.031 3.969 17 C -0.094 4.094 18 C -0.145 4.145 19 C -0.063 4.063 20 C -0.121 4.121 21 C -0.154 4.154 22 C -0.146 4.146 23 C -0.126 4.126 24 C -0.043 4.043 25 C -0.153 4.153 26 H 0.098 0.902 27 H 0.145 0.855 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.151 0.849 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.808 -2.549 -3.925 9.103 hybrid contribution 0.141 0.594 0.063 0.613 sum 7.948 -1.956 -3.862 9.051 Atomic orbital electron populations 1.69768 1.07674 1.30061 1.33092 1.25995 0.94777 1.01592 0.92072 0.86328 0.80227 0.79760 0.80463 1.18588 1.20099 1.18544 1.19587 0.97747 0.90533 1.39085 0.89532 1.17564 0.90685 0.91173 0.88485 1.20941 0.98258 0.96511 0.99658 1.20511 1.00293 0.92014 1.01428 1.17175 0.98715 0.81416 1.09249 1.91292 1.81511 1.49848 1.92598 1.20545 0.95240 0.97277 0.98160 1.18362 1.00129 0.93274 1.05686 1.18730 0.92753 0.92732 0.92724 1.21194 0.97939 0.97348 0.92887 1.20862 0.94052 0.99187 1.00380 1.18076 0.95376 0.97259 0.95617 1.20965 0.93517 0.98779 0.98825 1.20682 0.98976 0.97443 0.98340 1.20690 0.98359 0.99772 0.95814 1.21021 0.93690 0.98479 0.99455 1.18003 0.94999 0.96181 0.95105 1.21375 0.93069 1.01146 0.99694 0.90236 0.85461 0.88060 0.87836 0.84911 0.86287 0.86298 0.86844 0.86784 0.86164 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.23 10.99 55.55 0.61 -17.62 16 2 C 0.08 1.71 5.17 -17.32 -0.09 1.62 16 3 Si 0.91 17.23 29.59 -169.99 -5.03 12.20 16 4 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 5 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 7 C -0.44 -10.46 7.06 -37.94 -0.27 -10.73 16 8 H 0.09 2.03 6.65 -52.49 -0.35 1.69 16 9 C 0.12 3.00 5.55 -106.55 -0.59 2.41 16 10 C -0.13 -3.23 8.61 -39.30 -0.34 -3.56 16 11 C -0.12 -2.81 9.94 -39.90 -0.40 -3.20 16 12 C -0.05 -1.05 7.31 -39.17 -0.29 -1.34 16 13 F -0.17 -3.84 17.26 2.25 0.04 -3.80 16 14 C -0.09 -2.07 9.46 -39.22 -0.37 -2.44 16 15 C -0.17 -3.93 5.50 -104.25 -0.57 -4.50 16 16 C 0.03 0.63 4.92 -104.93 -0.52 0.12 16 17 C -0.08 -1.48 7.89 -39.57 -0.31 -1.79 16 18 C -0.13 -2.17 9.73 -39.54 -0.38 -2.55 16 19 C -0.06 -1.06 5.75 -106.75 -0.61 -1.68 16 20 C -0.10 -1.45 9.76 -39.49 -0.39 -1.84 16 21 C -0.14 -1.75 9.95 -39.91 -0.40 -2.14 16 22 C -0.13 -1.66 9.95 -39.93 -0.40 -2.06 16 23 C -0.11 -1.59 9.77 -39.43 -0.39 -1.98 16 24 C -0.04 -0.74 5.74 -106.85 -0.61 -1.35 16 25 C -0.13 -2.52 9.25 -38.68 -0.36 -2.87 16 26 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 27 H 0.13 3.09 6.26 -52.49 -0.33 2.76 16 28 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 29 H 0.10 2.10 8.04 -52.48 -0.42 1.68 16 30 H 0.13 2.70 7.28 -52.48 -0.38 2.32 16 31 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 32 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 33 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.11 1.17 8.06 -52.49 -0.42 0.74 16 35 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.12 2.12 8.03 -52.49 -0.42 1.70 16 LS Contribution 313.32 15.07 4.72 4.72 Total: -1.00 -25.32 313.32 -10.51 -35.83 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -3.57 Total: 8.56 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: -7.28 Total: -39.90 kcal Atomic # 7 Polarization: -18.23 SS G_CDS: 0.61 Total: -17.62 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.04 Total: -3.80 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.20 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -25.32 -10.51 -35.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240909508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.969 kcal (2) G-P(sol) polarization free energy of solvation -25.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds