Wall clock time and date at job start Tue Mar 31 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30797 * 1 3 3 Si 1.86804 * 120.00415 * 2 1 4 4 H 1.48497 * 109.47017 * 240.00241 * 3 2 1 5 5 H 1.48505 * 109.46790 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47150 * 119.99881 * 3 2 1 7 7 C 1.40043 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00462 * 164.40849 * 7 2 1 9 9 C 1.40789 * 119.99883 * 344.40112 * 7 2 1 10 10 C 1.40806 * 120.30448 * 332.97763 * 9 7 2 11 11 C 1.36329 * 120.01910 * 179.97438 * 10 9 7 12 12 C 1.39235 * 120.66368 * 359.97438 * 11 10 9 13 13 F 1.35100 * 119.68872 * 180.02562 * 12 11 10 14 14 C 1.38354 * 120.61940 * 359.78658 * 12 11 10 15 15 C 1.39109 * 119.95098 * 0.45175 * 14 12 11 16 16 C 1.47796 * 120.32169 * 179.81571 * 15 14 12 17 17 C 1.40680 * 119.75799 * 129.71748 * 16 15 14 18 18 C 1.35688 * 120.84859 * 180.02562 * 17 16 15 19 19 C 1.40758 * 120.02647 * 0.02562 * 18 17 16 20 20 C 1.40444 * 121.02905 * 179.97438 * 19 18 17 21 21 C 1.36178 * 119.72672 * 180.02562 * 20 19 18 22 22 C 1.39351 * 121.01157 * 0.02562 * 21 20 19 23 23 C 1.36109 * 120.94726 * 359.97438 * 22 21 20 24 24 C 1.40677 * 119.65996 * 0.02562 * 23 22 21 25 25 C 1.38614 * 119.75291 * 309.69200 * 16 15 14 26 26 H 0.97006 * 119.99340 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.98999 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.67092 * 180.02562 * 11 10 9 29 29 H 1.08006 * 120.02273 * 180.25531 * 14 12 11 30 30 H 1.08006 * 119.57769 * 359.97438 * 17 16 15 31 31 H 1.07994 * 119.98494 * 179.97438 * 18 17 16 32 32 H 1.08004 * 120.13833 * 0.04996 * 20 19 18 33 33 H 1.07999 * 119.49347 * 180.02562 * 21 20 19 34 34 H 1.07999 * 119.52820 * 180.02562 * 22 21 20 35 35 H 1.08001 * 120.16913 * 180.27110 * 23 22 21 36 36 H 1.07998 * 120.27774 * 0.02562 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.0958 1.6963 -1.2125 5 1 1.2771 2.7465 -0.0006 6 1 3.0958 1.6963 1.2125 7 6 2.0082 -1.2128 -0.0005 8 1 3.0584 -1.2300 -0.2519 9 6 1.3431 -2.4098 0.3268 10 6 0.2155 -2.3884 1.1698 11 6 -0.4244 -3.5508 1.4826 12 6 0.0249 -4.7673 0.9756 13 9 -0.6245 -5.9073 1.2980 14 6 1.1271 -4.8190 0.1410 15 6 1.8024 -3.6490 -0.1909 16 6 2.9832 -3.6952 -1.0785 17 6 3.0575 -2.8325 -2.1872 18 6 4.1309 -2.8565 -3.0169 19 6 5.1888 -3.7528 -2.7742 20 6 6.3095 -3.7959 -3.6195 21 6 7.3176 -4.6739 -3.3601 22 6 7.2562 -5.5347 -2.2660 23 6 6.1864 -5.5220 -1.4246 24 6 5.1257 -4.6286 -1.6606 25 6 4.0096 -4.5879 -0.8121 26 1 -0.4849 0.8402 -0.0004 27 1 -0.1425 -1.4508 1.5688 28 1 -1.2890 -3.5279 2.1294 29 1 1.4648 -5.7674 -0.2501 30 1 2.2493 -2.1426 -2.3810 31 1 4.1732 -2.1883 -3.8642 32 1 6.3718 -3.1352 -4.4716 33 1 8.1778 -4.7036 -4.0124 34 1 8.0695 -6.2212 -2.0825 35 1 6.1539 -6.1916 -0.5778 36 1 3.9490 -5.2487 0.0400 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240909508.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:16 Heat of formation + Delta-G solvation = -6.759670 kcal Electronic energy + Delta-G solvation = -21664.098014 eV Core-core repulsion = 18376.778885 eV Total energy + Delta-G solvation = -3287.319129 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.34849 -41.13350 -39.48153 -37.03237 -35.57916 -33.67322 -32.54367 -31.42179 -30.36564 -29.34552 -26.98207 -24.66851 -23.85796 -23.06973 -22.48722 -21.86665 -19.33805 -18.56317 -17.90772 -17.35988 -17.22819 -16.61988 -16.27792 -16.09712 -15.84169 -15.47883 -14.99075 -14.55505 -14.48479 -14.27235 -14.12364 -13.90037 -13.78122 -13.57035 -13.14731 -12.84829 -12.70206 -12.60936 -12.23997 -12.05745 -11.97603 -11.69345 -11.58121 -11.29421 -11.08186 -10.78396 -9.78475 -9.31558 -9.14833 -8.76873 -8.53738 -6.36281 -0.30453 0.13666 0.74047 0.89088 1.28843 1.38563 1.46943 1.49947 2.16596 2.23842 2.59901 3.29379 3.55763 3.79778 3.85141 4.09020 4.09501 4.19440 4.23818 4.34616 4.38665 4.50003 4.60624 4.64152 4.74429 4.97113 5.00924 5.07098 5.14932 5.22330 5.25454 5.42932 5.46017 5.49922 5.66225 5.67072 5.78015 5.82246 5.90690 6.04140 6.06794 6.20731 6.25904 6.53220 6.79940 6.86800 8.21814 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.012041 B = 0.006121 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.851751 B = 4573.568780 C = 6533.753054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.042 3.958 3 Si 0.972 3.028 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.098 3.902 10 C -0.154 4.154 11 C -0.127 4.127 12 C -0.059 4.059 13 F -0.170 7.170 14 C -0.099 4.099 15 C -0.172 4.172 16 C -0.001 4.001 17 C -0.099 4.099 18 C -0.117 4.117 19 C -0.078 4.078 20 C -0.112 4.112 21 C -0.126 4.126 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.062 4.062 25 C -0.133 4.133 26 H 0.294 0.706 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.111 0.889 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.135 0.865 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.162 -2.981 -5.380 12.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.175 4.175 3 Si 0.793 3.207 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.187 1.187 7 C -0.485 4.485 8 H 0.099 0.901 9 C 0.095 3.905 10 C -0.174 4.174 11 C -0.146 4.146 12 C -0.079 4.079 13 F -0.149 7.149 14 C -0.118 4.118 15 C -0.174 4.174 16 C -0.001 4.001 17 C -0.117 4.117 18 C -0.135 4.135 19 C -0.078 4.078 20 C -0.129 4.129 21 C -0.144 4.144 22 C -0.135 4.135 23 C -0.141 4.141 24 C -0.062 4.062 25 C -0.151 4.151 26 H 0.105 0.895 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.129 0.871 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.153 0.847 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.910 -2.858 -5.383 12.497 hybrid contribution -0.618 0.536 0.403 0.912 sum 10.292 -2.322 -4.980 11.667 Atomic orbital electron populations 1.69806 1.08880 1.31245 1.33473 1.26707 0.95389 1.04216 0.91217 0.85369 0.79028 0.76018 0.80264 1.18164 1.18969 1.18662 1.19654 0.97554 0.91245 1.40063 0.90093 1.17907 0.91275 0.92270 0.89029 1.20911 0.99157 0.96574 1.00722 1.20666 1.00694 0.91700 1.01524 1.17307 0.99175 0.81583 1.09847 1.91288 1.81464 1.49557 1.92623 1.20750 0.95051 0.97924 0.98072 1.18685 1.00661 0.92881 1.05157 1.18706 0.93025 0.94839 0.93569 1.21007 0.98733 0.97951 0.94058 1.21123 0.93116 0.99091 1.00133 1.18381 0.96258 0.97046 0.96153 1.21280 0.92761 0.99743 0.99146 1.21190 0.99344 0.95697 0.98120 1.21171 0.98239 0.99432 0.94697 1.21260 0.93598 0.98520 1.00771 1.18251 0.95339 0.97361 0.95298 1.21466 0.93278 1.00323 1.00021 0.89517 0.86365 0.86324 0.86311 0.87053 0.83782 0.83738 0.83135 0.83309 0.84668 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.95 10.99 21.85 0.24 -38.71 16 2 C 0.04 1.96 5.17 85.28 0.44 2.40 16 3 Si 0.97 35.63 29.59 68.60 2.03 37.65 16 4 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 5 H -0.27 -9.18 7.11 99.48 0.71 -8.48 16 6 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 7 C -0.46 -22.64 7.06 23.33 0.16 -22.47 16 8 H 0.08 3.99 6.65 -2.91 -0.02 3.97 16 9 C 0.10 5.00 5.55 -21.11 -0.12 4.88 16 10 C -0.15 -7.77 8.61 22.45 0.19 -7.57 16 11 C -0.13 -5.97 9.94 22.06 0.22 -5.75 16 12 C -0.06 -2.79 7.31 22.54 0.16 -2.63 16 13 F -0.17 -7.61 17.26 44.97 0.78 -6.83 16 14 C -0.10 -4.55 9.46 22.51 0.21 -4.33 16 15 C -0.17 -8.20 5.50 -19.62 -0.11 -8.30 16 16 C 0.00 -0.06 4.92 -20.06 -0.10 -0.16 16 17 C -0.10 -4.02 7.89 22.28 0.18 -3.84 16 18 C -0.12 -3.93 9.73 22.29 0.22 -3.71 16 19 C -0.08 -2.49 5.75 -21.24 -0.12 -2.62 16 20 C -0.11 -2.72 9.76 22.33 0.22 -2.50 16 21 C -0.13 -2.58 9.95 22.06 0.22 -2.36 16 22 C -0.12 -2.51 9.95 22.04 0.22 -2.29 16 23 C -0.12 -3.29 9.77 22.37 0.22 -3.07 16 24 C -0.06 -2.09 5.74 -21.31 -0.12 -2.21 16 25 C -0.13 -5.02 9.25 22.85 0.21 -4.81 16 26 H 0.29 12.78 8.30 -92.70 -0.77 12.01 16 27 H 0.12 6.05 6.26 -2.91 -0.02 6.03 16 28 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 29 H 0.12 4.94 8.04 -2.91 -0.02 4.91 16 30 H 0.11 4.85 7.28 -2.91 -0.02 4.83 16 31 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 32 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 33 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 34 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 35 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.12 4.42 8.03 -2.91 -0.02 4.39 16 Total: -1.00 -56.56 313.32 6.46 -50.11 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 1.11 Total: 29.12 kcal Atomic # 6 Polarization: -73.65 SS G_CDS: 2.31 Total: -71.35 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.24 Total: -38.71 kcal Atomic # 9 Polarization: -7.61 SS G_CDS: 0.78 Total: -6.83 kcal Atomic # 14 Polarization: 35.63 SS G_CDS: 2.03 Total: 37.65 kcal Total: -56.56 6.46 -50.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240909508.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.347 kcal (2) G-P(sol) polarization free energy of solvation -56.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds