Wall clock time and date at job start Tue Mar 31 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86802 * 120.00229 * 2 1 4 4 H 1.48498 * 109.46928 * 240.00159 * 3 2 1 5 5 H 1.48495 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46925 * 120.00203 * 3 2 1 7 7 C 1.39917 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00221 * 162.58756 * 7 2 1 9 9 C 1.41322 * 119.99995 * 342.31774 * 7 2 1 10 10 C 1.40523 * 120.20281 * 334.97134 * 9 7 2 11 11 C 1.38702 * 119.65352 * 179.79329 * 10 9 7 12 12 C 1.48350 * 119.97306 * 180.23093 * 11 10 9 13 13 C 1.40436 * 119.71542 * 0.25127 * 12 11 10 14 14 C 1.35801 * 120.87312 * 179.97438 * 13 12 11 15 15 C 1.40648 * 119.97626 * 0.02562 * 14 13 12 16 16 C 1.40518 * 121.07517 * 180.02562 * 15 14 13 17 17 C 1.36114 * 119.71049 * 179.97438 * 16 15 14 18 18 C 1.39365 * 121.00644 * 0.04250 * 17 16 15 19 19 C 1.36094 * 120.96063 * 359.95192 * 18 17 16 20 20 C 1.40624 * 119.65949 * 0.02983 * 19 18 17 21 21 C 1.38202 * 119.72112 * 179.97438 * 12 11 10 22 22 C 1.39842 * 120.06251 * 0.48430 * 11 10 9 23 23 C 1.38224 * 120.42106 * 359.74453 * 22 11 10 24 24 C 1.38071 * 120.35073 * 0.02562 * 23 22 11 25 25 F 1.35098 * 120.04534 * 179.97438 * 24 23 22 26 26 H 0.97003 * 119.99743 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.17706 * 0.02562 * 10 9 7 28 28 H 1.08003 * 119.56591 * 359.96403 * 13 12 11 29 29 H 1.08001 * 120.00826 * 179.97438 * 14 13 12 30 30 H 1.08000 * 120.14172 * 359.97027 * 16 15 14 31 31 H 1.08007 * 119.49730 * 180.02562 * 17 16 15 32 32 H 1.07999 * 119.51930 * 179.97438 * 18 17 16 33 33 H 1.07994 * 120.16620 * 179.97438 * 19 18 17 34 34 H 1.07998 * 120.26573 * 0.02562 * 21 12 11 35 35 H 1.08003 * 119.79519 * 179.76678 * 22 11 10 36 36 H 1.08005 * 119.82713 * 179.97438 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.0963 1.6963 -1.2125 5 1 1.2776 2.7464 0.0006 6 1 3.0964 1.6963 1.2125 7 6 2.0081 -1.2117 0.0005 8 1 3.0510 -1.2334 -0.2793 9 6 1.3515 -2.4065 0.3728 10 6 0.2277 -2.3626 1.2154 11 6 -0.4105 -3.5419 1.5701 12 6 -1.6005 -3.5033 2.4551 13 6 -2.0785 -2.2695 2.9256 14 6 -3.1661 -2.2068 3.7364 15 6 -3.8288 -3.3880 4.1156 16 6 -4.9566 -3.3500 4.9531 17 6 -5.5769 -4.5101 5.3023 18 6 -5.1105 -5.7402 4.8424 19 6 -4.0215 -5.8167 4.0298 20 6 -3.3546 -4.6393 3.6473 21 6 -2.2328 -4.6815 2.8048 22 6 0.0698 -4.7676 1.0986 23 6 1.1778 -4.8145 0.2735 24 6 1.8236 -3.6509 -0.0942 25 9 2.9063 -3.7039 -0.9005 26 1 -0.4850 0.8401 0.0004 27 1 -0.1393 -1.4153 1.5819 28 1 -1.5743 -1.3584 2.6391 29 1 -3.5214 -1.2504 4.0905 30 1 -5.3294 -2.4043 5.3181 31 1 -6.4437 -4.4768 5.9458 32 1 -5.6210 -6.6459 5.1348 33 1 -3.6708 -6.7769 3.6813 34 1 -1.8636 -5.6273 2.4368 35 1 -0.4282 -5.6835 1.3805 36 1 1.5409 -5.7665 -0.0848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240909857.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:19 Heat of formation + Delta-G solvation = 3.450293 kcal Electronic energy + Delta-G solvation = -21365.690588 eV Core-core repulsion = 18078.814196 eV Total energy + Delta-G solvation = -3286.876392 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.31543 -40.05365 -37.80563 -35.87760 -33.91653 -32.51303 -31.01235 -30.03604 -29.09962 -27.60314 -25.46856 -23.24770 -22.85482 -21.91965 -20.88692 -20.20519 -17.60096 -17.13688 -16.63588 -16.10777 -15.66153 -15.26873 -14.62943 -14.41677 -14.15776 -14.08455 -13.48239 -13.39841 -13.23961 -13.12054 -12.75074 -12.32974 -12.00887 -11.82005 -11.70727 -11.54697 -11.27331 -11.17953 -10.84142 -10.71267 -10.61323 -10.41007 -10.02521 -9.72505 -9.54426 -9.34578 -8.50839 -7.80292 -7.72031 -7.04123 -6.82615 -4.53364 0.73516 1.19360 2.20538 2.59086 2.66728 2.99321 3.01761 3.07002 3.45303 3.82184 4.30820 4.59149 4.80809 4.98378 5.07679 5.25224 5.30879 5.38871 5.45385 5.59880 5.65568 5.74215 5.83948 5.94989 6.04383 6.18138 6.28880 6.38170 6.48926 6.50479 6.61125 6.76802 6.78949 6.87535 7.02039 7.07020 7.12950 7.26299 7.42111 7.45141 7.77671 7.81638 7.95633 8.37245 8.60477 8.68339 9.99799 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.004341 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.983632 B = 6448.045184 C = 7830.809704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.077 3.923 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.453 4.453 8 H 0.084 0.916 9 C 0.083 3.917 10 C -0.122 4.122 11 C -0.059 4.059 12 C -0.001 4.001 13 C -0.097 4.097 14 C -0.115 4.115 15 C -0.062 4.062 16 C -0.103 4.103 17 C -0.132 4.132 18 C -0.125 4.125 19 C -0.107 4.107 20 C -0.044 4.044 21 C -0.122 4.122 22 C -0.202 4.202 23 C -0.123 4.123 24 C -0.023 4.023 25 F -0.162 7.162 26 H 0.285 0.715 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.102 0.898 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.375 -4.038 7.977 12.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.482 4.482 8 H 0.102 0.898 9 C 0.080 3.920 10 C -0.141 4.141 11 C -0.060 4.060 12 C -0.001 4.001 13 C -0.115 4.115 14 C -0.133 4.133 15 C -0.062 4.062 16 C -0.121 4.121 17 C -0.150 4.150 18 C -0.144 4.144 19 C -0.125 4.125 20 C -0.044 4.044 21 C -0.140 4.140 22 C -0.221 4.221 23 C -0.142 4.142 24 C -0.043 4.043 25 F -0.141 7.141 26 H 0.096 0.904 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.120 0.880 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.543 -3.865 7.924 12.276 hybrid contribution 0.474 0.699 -0.267 0.886 sum -8.068 -3.166 7.657 11.565 Atomic orbital electron populations 1.69796 1.07589 1.29843 1.34169 1.25913 0.94800 1.01507 0.91948 0.86273 0.80162 0.79618 0.80283 1.18766 1.20105 1.18588 1.19501 0.98388 0.90878 1.39400 0.89784 1.17540 0.92549 0.91030 0.90885 1.21358 0.97445 0.96565 0.98754 1.18520 0.94660 0.94209 0.98600 1.19034 0.94070 0.92468 0.94534 1.21170 0.95906 0.98316 0.96080 1.20888 0.96344 0.96930 0.99123 1.18093 0.96320 0.93098 0.98711 1.20990 0.95142 0.98351 0.97592 1.20724 1.00420 0.92663 1.01207 1.20737 0.97253 0.97569 0.98793 1.21025 0.95914 0.97303 0.98248 1.18034 0.95894 0.92778 0.97707 1.21339 0.95415 0.98420 0.98844 1.20233 1.00074 0.95819 1.05990 1.20422 0.97352 0.95817 1.00584 1.17958 0.90759 0.94810 1.00776 1.91277 1.53507 1.97308 1.72017 0.90395 0.84925 0.84915 0.85921 0.86072 0.86596 0.86539 0.85926 0.85350 0.87963 0.87825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.21 10.98 55.55 0.61 -18.60 16 2 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.02 29.59 -169.99 -5.03 12.99 16 4 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 5 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.45 -11.81 8.77 -37.78 -0.33 -12.14 16 8 H 0.08 2.17 7.73 -52.49 -0.41 1.76 16 9 C 0.08 2.17 5.57 -106.80 -0.59 1.58 16 10 C -0.12 -2.98 8.05 -38.55 -0.31 -3.29 16 11 C -0.06 -1.32 5.87 -104.96 -0.62 -1.93 16 12 C 0.00 -0.02 5.87 -104.92 -0.62 -0.64 16 13 C -0.10 -1.76 9.32 -39.63 -0.37 -2.13 16 14 C -0.11 -1.80 9.74 -39.55 -0.38 -2.18 16 15 C -0.06 -0.96 5.74 -106.78 -0.61 -1.57 16 16 C -0.10 -1.31 9.76 -39.49 -0.39 -1.70 16 17 C -0.13 -1.52 9.95 -39.93 -0.40 -1.92 16 18 C -0.13 -1.47 9.95 -39.93 -0.40 -1.86 16 19 C -0.11 -1.42 9.77 -39.45 -0.39 -1.80 16 20 C -0.04 -0.70 5.74 -106.85 -0.61 -1.31 16 21 C -0.12 -2.11 9.17 -38.80 -0.36 -2.46 16 22 C -0.20 -4.27 9.42 -38.99 -0.37 -4.64 16 23 C -0.12 -2.72 9.99 -39.65 -0.40 -3.12 16 24 C -0.02 -0.57 7.31 -38.58 -0.28 -0.85 16 25 F -0.16 -4.04 16.71 2.25 0.04 -4.00 16 26 H 0.29 6.29 8.30 -40.82 -0.34 5.95 16 27 H 0.13 3.23 4.27 -52.49 -0.22 3.00 16 28 H 0.13 2.47 6.13 -52.48 -0.32 2.15 16 29 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 31 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 32 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.13 2.02 6.13 -52.49 -0.32 1.69 16 35 H 0.10 1.86 6.14 -52.48 -0.32 1.54 16 36 H 0.10 2.01 8.06 -52.48 -0.42 1.59 16 LS Contribution 310.77 15.07 4.68 4.68 Total: -1.00 -27.22 310.77 -10.47 -37.69 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -3.27 Total: 7.47 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: -7.50 Total: -40.22 kcal Atomic # 7 Polarization: -19.21 SS G_CDS: 0.61 Total: -18.60 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.04 Total: -4.00 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 12.99 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -27.22 -10.47 -37.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240909857.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.137 kcal (2) G-P(sol) polarization free energy of solvation -27.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds