Wall clock time and date at job start Tue Mar 31 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30851 * 1 3 3 Si 1.86802 * 120.00229 * 2 1 4 4 H 1.48498 * 109.46928 * 240.00159 * 3 2 1 5 5 H 1.48495 * 109.47021 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46925 * 120.00203 * 3 2 1 7 7 C 1.39917 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00221 * 162.58756 * 7 2 1 9 9 C 1.41322 * 119.99995 * 342.31774 * 7 2 1 10 10 C 1.40523 * 120.20281 * 334.97134 * 9 7 2 11 11 C 1.38702 * 119.65352 * 179.79329 * 10 9 7 12 12 C 1.48350 * 119.97306 * 180.23093 * 11 10 9 13 13 C 1.40436 * 119.71542 * 0.25127 * 12 11 10 14 14 C 1.35801 * 120.87312 * 179.97438 * 13 12 11 15 15 C 1.40648 * 119.97626 * 0.02562 * 14 13 12 16 16 C 1.40518 * 121.07517 * 180.02562 * 15 14 13 17 17 C 1.36114 * 119.71049 * 179.97438 * 16 15 14 18 18 C 1.39365 * 121.00644 * 0.04250 * 17 16 15 19 19 C 1.36094 * 120.96063 * 359.95192 * 18 17 16 20 20 C 1.40624 * 119.65949 * 0.02983 * 19 18 17 21 21 C 1.38202 * 119.72112 * 179.97438 * 12 11 10 22 22 C 1.39842 * 120.06251 * 0.48430 * 11 10 9 23 23 C 1.38224 * 120.42106 * 359.74453 * 22 11 10 24 24 C 1.38071 * 120.35073 * 0.02562 * 23 22 11 25 25 F 1.35098 * 120.04534 * 179.97438 * 24 23 22 26 26 H 0.97003 * 119.99743 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.17706 * 0.02562 * 10 9 7 28 28 H 1.08003 * 119.56591 * 359.96403 * 13 12 11 29 29 H 1.08001 * 120.00826 * 179.97438 * 14 13 12 30 30 H 1.08000 * 120.14172 * 359.97027 * 16 15 14 31 31 H 1.08007 * 119.49730 * 180.02562 * 17 16 15 32 32 H 1.07999 * 119.51930 * 179.97438 * 18 17 16 33 33 H 1.07994 * 120.16620 * 179.97438 * 19 18 17 34 34 H 1.07998 * 120.26573 * 0.02562 * 21 12 11 35 35 H 1.08003 * 119.79519 * 179.76678 * 22 11 10 36 36 H 1.08005 * 119.82713 * 179.97438 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.0963 1.6963 -1.2125 5 1 1.2776 2.7464 0.0006 6 1 3.0964 1.6963 1.2125 7 6 2.0081 -1.2117 0.0005 8 1 3.0510 -1.2334 -0.2793 9 6 1.3515 -2.4065 0.3728 10 6 0.2277 -2.3626 1.2154 11 6 -0.4105 -3.5419 1.5701 12 6 -1.6005 -3.5033 2.4551 13 6 -2.0785 -2.2695 2.9256 14 6 -3.1661 -2.2068 3.7364 15 6 -3.8288 -3.3880 4.1156 16 6 -4.9566 -3.3500 4.9531 17 6 -5.5769 -4.5101 5.3023 18 6 -5.1105 -5.7402 4.8424 19 6 -4.0215 -5.8167 4.0298 20 6 -3.3546 -4.6393 3.6473 21 6 -2.2328 -4.6815 2.8048 22 6 0.0698 -4.7676 1.0986 23 6 1.1778 -4.8145 0.2735 24 6 1.8236 -3.6509 -0.0942 25 9 2.9063 -3.7039 -0.9005 26 1 -0.4850 0.8401 0.0004 27 1 -0.1393 -1.4153 1.5819 28 1 -1.5743 -1.3584 2.6391 29 1 -3.5214 -1.2504 4.0905 30 1 -5.3294 -2.4043 5.3181 31 1 -6.4437 -4.4768 5.9458 32 1 -5.6210 -6.6459 5.1348 33 1 -3.6708 -6.7769 3.6813 34 1 -1.8636 -5.6273 2.4368 35 1 -0.4282 -5.6835 1.3805 36 1 1.5409 -5.7665 -0.0848 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240909857.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:18 Heat of formation + Delta-G solvation = -6.859462 kcal Electronic energy + Delta-G solvation = -21366.137653 eV Core-core repulsion = 18078.814196 eV Total energy + Delta-G solvation = -3287.323457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.23930 -41.23149 -39.41299 -37.18572 -35.68367 -33.71325 -32.38833 -31.79065 -30.32952 -29.06101 -27.27335 -24.53550 -24.23272 -23.19583 -22.36330 -21.81483 -19.32502 -18.46573 -18.04008 -17.63039 -17.08527 -16.90904 -16.19988 -16.01018 -15.71227 -15.43915 -14.97036 -14.58959 -14.57069 -14.49694 -14.12776 -13.71809 -13.65750 -13.51813 -13.19283 -13.05978 -12.79450 -12.68955 -12.32440 -12.03611 -11.97640 -11.77473 -11.63399 -11.25637 -11.13345 -10.85983 -9.87338 -9.56708 -9.05600 -8.77299 -8.39101 -6.46567 -0.45231 -0.02488 0.80542 0.88120 1.24681 1.35269 1.45989 1.49580 2.15174 2.17841 2.67414 3.24282 3.56839 3.71689 3.83198 3.95627 4.01486 4.12322 4.23520 4.33931 4.38275 4.49731 4.50685 4.59391 4.65626 4.93516 4.95524 5.04425 5.12319 5.16675 5.18799 5.35936 5.39427 5.54254 5.58820 5.66743 5.67178 5.73053 5.95127 5.98308 6.04348 6.13609 6.18577 6.50156 6.72907 6.81770 8.22090 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.004341 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.983632 B = 6448.045184 C = 7830.809704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.042 3.958 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.259 1.259 7 C -0.496 4.496 8 H 0.071 0.929 9 C 0.055 3.945 10 C -0.147 4.147 11 C -0.055 4.055 12 C -0.040 4.040 13 C -0.122 4.122 14 C -0.107 4.107 15 C -0.075 4.075 16 C -0.114 4.114 17 C -0.121 4.121 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.065 4.065 21 C -0.112 4.112 22 C -0.199 4.199 23 C -0.119 4.119 24 C -0.062 4.062 25 F -0.170 7.170 26 H 0.294 0.706 27 H 0.124 0.876 28 H 0.113 0.887 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.316 -5.266 10.127 16.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.175 4.175 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.183 1.183 7 C -0.525 4.525 8 H 0.089 0.911 9 C 0.052 3.948 10 C -0.166 4.166 11 C -0.055 4.055 12 C -0.040 4.040 13 C -0.140 4.140 14 C -0.125 4.125 15 C -0.075 4.075 16 C -0.132 4.132 17 C -0.139 4.139 18 C -0.135 4.135 19 C -0.136 4.136 20 C -0.065 4.065 21 C -0.130 4.130 22 C -0.218 4.218 23 C -0.138 4.138 24 C -0.082 4.082 25 F -0.149 7.149 26 H 0.105 0.895 27 H 0.142 0.858 28 H 0.131 0.869 29 H 0.165 0.835 30 H 0.163 0.837 31 H 0.169 0.831 32 H 0.169 0.831 33 H 0.160 0.840 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.495 -5.113 10.076 16.118 hybrid contribution 1.087 0.873 -0.745 1.581 sum -10.408 -4.240 9.331 14.607 Atomic orbital electron populations 1.69832 1.08755 1.31168 1.34136 1.26695 0.95577 1.04263 0.90915 0.85243 0.78945 0.75464 0.80090 1.18721 1.18302 1.18325 1.19662 0.98227 0.92506 1.42090 0.91076 1.17915 0.93517 0.91762 0.91570 1.21351 0.98030 0.97399 0.99827 1.18890 0.94995 0.93791 0.97847 1.18969 0.94486 0.94036 0.96498 1.21066 0.97477 0.97350 0.98098 1.21144 0.95092 0.98527 0.97728 1.18414 0.97228 0.92703 0.99153 1.21298 0.94335 1.00325 0.97205 1.21231 1.00603 0.91988 1.00051 1.21222 0.96169 0.99142 0.96948 1.21297 0.96435 0.97129 0.98778 1.18299 0.95953 0.94256 0.98016 1.21512 0.95369 0.97879 0.98200 1.20670 0.99485 0.96844 1.04763 1.20763 0.97012 0.96052 0.99938 1.18305 0.91717 0.95789 1.02353 1.91233 1.53931 1.97371 1.72377 0.89522 0.85802 0.86868 0.83488 0.83674 0.83069 0.83111 0.83996 0.84092 0.84414 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.60 10.98 21.82 0.24 -41.36 16 2 C 0.04 2.11 5.14 85.25 0.44 2.55 16 3 Si 0.98 38.20 29.59 68.60 2.03 40.23 16 4 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 5 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 6 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 7 C -0.50 -27.68 8.77 23.44 0.21 -27.48 16 8 H 0.07 3.97 7.73 -2.91 -0.02 3.95 16 9 C 0.06 3.08 5.57 -21.28 -0.12 2.96 16 10 C -0.15 -7.65 8.05 22.94 0.18 -7.46 16 11 C -0.05 -2.52 5.87 -20.09 -0.12 -2.64 16 12 C -0.04 -1.59 5.87 -20.06 -0.12 -1.70 16 13 C -0.12 -4.60 9.32 22.24 0.21 -4.39 16 14 C -0.11 -3.30 9.74 22.29 0.22 -3.08 16 15 C -0.07 -2.16 5.74 -21.26 -0.12 -2.28 16 16 C -0.11 -2.47 9.76 22.33 0.22 -2.25 16 17 C -0.12 -2.15 9.95 22.05 0.22 -1.93 16 18 C -0.12 -2.13 9.95 22.04 0.22 -1.91 16 19 C -0.12 -2.70 9.77 22.35 0.22 -2.48 16 20 C -0.07 -1.93 5.74 -21.31 -0.12 -2.05 16 21 C -0.11 -3.75 9.17 22.78 0.21 -3.54 16 22 C -0.20 -8.40 9.42 22.65 0.21 -8.19 16 23 C -0.12 -5.33 9.99 22.23 0.22 -5.11 16 24 C -0.06 -3.24 7.31 22.92 0.17 -3.07 16 25 F -0.17 -8.94 16.71 44.97 0.75 -8.19 16 26 H 0.29 13.43 8.30 -92.71 -0.77 12.66 16 27 H 0.12 6.53 4.27 -2.91 -0.01 6.52 16 28 H 0.11 4.58 6.13 -2.91 -0.02 4.57 16 29 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 30 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 31 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 32 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 33 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 34 H 0.14 4.15 6.13 -2.91 -0.02 4.14 16 35 H 0.14 4.74 6.14 -2.91 -0.02 4.72 16 36 H 0.13 5.05 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -63.49 310.77 6.48 -57.01 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 1.12 Total: 26.37 kcal Atomic # 6 Polarization: -76.40 SS G_CDS: 2.34 Total: -74.06 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.24 Total: -41.36 kcal Atomic # 9 Polarization: -8.94 SS G_CDS: 0.75 Total: -8.19 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Total: -63.49 6.48 -57.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240909857.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.150 kcal (2) G-P(sol) polarization free energy of solvation -63.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds