Wall clock time and date at job start Tue Mar 31 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86794 * 120.00212 * 2 1 4 4 H 1.48499 * 109.47443 * 87.60485 * 3 2 1 5 5 H 1.48501 * 109.47007 * 207.60829 * 3 2 1 6 6 H 1.48499 * 109.47065 * 327.60589 * 3 2 1 7 7 C 1.39999 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00014 * 330.97934 * 7 2 1 9 9 C 1.40917 * 120.00210 * 150.97555 * 7 2 1 10 10 C 1.40955 * 120.13290 * 144.99020 * 9 7 2 11 11 C 1.36164 * 119.90638 * 180.02562 * 10 9 7 12 12 C 1.40071 * 120.17940 * 0.02562 * 11 10 9 13 13 C 1.47914 * 119.86618 * 179.97438 * 12 11 10 14 14 C 1.40645 * 119.74829 * 0.02562 * 13 12 11 15 15 C 1.35695 * 120.84852 * 180.02562 * 14 13 12 16 16 C 1.40749 * 120.02740 * 359.97438 * 15 14 13 17 17 C 1.40446 * 121.04112 * 180.02562 * 16 15 14 18 18 C 1.36178 * 119.72111 * 179.97438 * 17 16 15 19 19 C 1.39359 * 121.01319 * 0.04593 * 18 17 16 20 20 C 1.36098 * 120.94986 * 359.95629 * 19 18 17 21 21 C 1.40682 * 119.65573 * 0.02562 * 20 19 18 22 22 C 1.38563 * 119.74928 * 179.72347 * 13 12 11 23 23 C 1.39828 * 120.26585 * 359.97438 * 12 11 10 24 24 C 1.36539 * 120.09856 * 359.75587 * 23 12 11 25 25 F 1.35098 * 120.09381 * 180.27759 * 24 23 12 26 26 H 0.97004 * 120.00008 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.05057 * 0.02777 * 10 9 7 28 28 H 1.07997 * 119.91705 * 179.97438 * 11 10 9 29 29 H 1.08004 * 119.57316 * 359.97438 * 14 13 12 30 30 H 1.08002 * 119.98250 * 179.97438 * 15 14 13 31 31 H 1.07997 * 120.13884 * 359.95556 * 17 16 15 32 32 H 1.08001 * 119.49346 * 180.02562 * 18 17 16 33 33 H 1.07996 * 119.52398 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.17204 * 180.02562 * 20 19 18 35 35 H 1.08008 * 120.27414 * 0.02562 * 22 13 12 36 36 H 1.08011 * 119.94967 * 180.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6176 0.0000 4 1 2.4391 2.0756 1.3988 5 1 3.5641 1.4259 -0.6488 6 1 1.4659 2.6374 -0.7501 7 6 2.0081 -1.2124 0.0005 8 1 1.5698 -2.0889 0.4547 9 6 3.2846 -1.2894 -0.5915 10 6 4.2737 -2.1251 -0.0347 11 6 5.5057 -2.1956 -0.6102 12 6 5.7929 -1.4394 -1.7538 13 6 7.1337 -1.5208 -2.3730 14 6 8.1130 -2.3584 -1.8094 15 6 9.3504 -2.4497 -2.3588 16 6 9.6679 -1.7012 -3.5078 17 6 10.9416 -1.7799 -4.0942 18 6 11.2196 -1.0442 -5.2060 19 6 10.2584 -0.2102 -5.7740 20 6 9.0133 -0.1078 -5.2339 21 6 8.6893 -0.8530 -4.0855 22 6 7.4135 -0.7762 -3.5075 23 6 4.8173 -0.6080 -2.3123 24 6 3.5764 -0.5331 -1.7474 25 9 2.6321 0.2660 -2.2904 26 1 -0.4850 0.8401 -0.0004 27 1 4.0547 -2.7088 0.8473 28 1 6.2637 -2.8355 -0.1835 29 1 7.8774 -2.9356 -0.9275 30 1 10.0919 -3.0970 -1.9143 31 1 11.6975 -2.4209 -3.6652 32 1 12.2001 -1.1079 -5.6542 33 1 10.5049 0.3628 -6.6555 34 1 8.2780 0.5421 -5.6847 35 1 6.6572 -0.1376 -3.9399 36 1 5.0442 -0.0275 -3.1944 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240910181.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:26 Heat of formation + Delta-G solvation = 13.057712 kcal Electronic energy + Delta-G solvation = -21397.353531 eV Core-core repulsion = 18110.893748 eV Total energy + Delta-G solvation = -3286.459783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.77685 -40.06119 -37.97226 -35.99734 -33.93082 -32.60605 -31.35627 -30.04079 -29.20390 -28.58146 -25.40049 -23.25433 -22.59634 -21.99050 -20.83503 -20.49966 -18.09077 -17.32019 -16.91277 -16.07458 -15.80182 -15.27306 -15.02476 -14.44114 -14.39705 -14.18194 -13.69682 -13.42625 -13.26269 -13.05971 -12.91385 -12.62417 -12.41028 -12.08209 -11.80054 -11.55846 -11.37494 -11.25030 -10.80889 -10.69214 -10.60856 -10.26828 -10.02505 -9.77855 -9.71309 -9.34577 -8.58153 -7.97744 -7.79636 -7.27203 -7.16523 -4.64917 0.69813 1.14551 2.11180 2.43969 2.50162 3.04202 3.09743 3.19544 3.39120 3.88184 4.19224 4.50237 4.77208 4.96894 5.05029 5.08915 5.16875 5.24792 5.41727 5.54155 5.58052 5.61711 5.73909 5.77311 5.99359 6.03294 6.18967 6.26036 6.42933 6.46295 6.52089 6.56807 6.61770 6.76357 6.85654 6.92629 7.05644 7.13248 7.25678 7.38703 7.52855 7.60754 7.82001 8.02332 8.34867 8.46050 9.70330 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.029996 B = 0.003836 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.245223 B = 7296.825098 C = 7902.859829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.089 3.911 3 Si 0.923 3.077 4 H -0.285 1.285 5 H -0.242 1.242 6 H -0.276 1.276 7 C -0.433 4.433 8 H 0.101 0.899 9 C 0.070 3.930 10 C -0.199 4.199 11 C -0.063 4.063 12 C -0.191 4.191 13 C 0.025 3.975 14 C -0.116 4.116 15 C -0.106 4.106 16 C -0.077 4.077 17 C -0.099 4.099 18 C -0.139 4.139 19 C -0.121 4.121 20 C -0.114 4.114 21 C -0.031 4.031 22 C -0.150 4.150 23 C -0.082 4.082 24 C -0.023 4.023 25 F -0.151 7.151 26 H 0.292 0.708 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.773 -0.737 -5.270 15.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.137 4.137 3 Si 0.748 3.252 4 H -0.213 1.213 5 H -0.165 1.165 6 H -0.201 1.201 7 C -0.458 4.458 8 H 0.119 0.881 9 C 0.066 3.934 10 C -0.218 4.218 11 C -0.081 4.081 12 C -0.192 4.192 13 C 0.025 3.975 14 C -0.134 4.134 15 C -0.124 4.124 16 C -0.077 4.077 17 C -0.117 4.117 18 C -0.157 4.157 19 C -0.139 4.139 20 C -0.132 4.132 21 C -0.031 4.031 22 C -0.168 4.168 23 C -0.101 4.101 24 C -0.043 4.043 25 F -0.131 7.131 26 H 0.103 0.897 27 H 0.129 0.871 28 H 0.122 0.878 29 H 0.142 0.858 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 14.405 -0.629 -5.277 15.355 hybrid contribution -0.091 0.852 -0.106 0.863 sum 14.315 0.223 -5.383 15.295 Atomic orbital electron populations 1.69757 1.08707 1.31354 1.29055 1.26423 0.94724 1.02726 0.89792 0.86102 0.82815 0.78603 0.77666 1.21292 1.16507 1.20081 1.19493 0.97618 0.97833 1.30819 0.88138 1.17789 0.93414 0.91934 0.90297 1.20583 0.92727 1.06585 1.01883 1.20544 0.96383 0.96904 0.94262 1.17776 0.92646 1.07314 1.01432 1.18824 0.92759 0.93117 0.92810 1.20978 0.92986 0.99156 1.00304 1.20844 0.96877 0.99264 0.95446 1.18036 0.94022 0.98828 0.96819 1.20959 0.95509 0.99153 0.96071 1.20705 0.99298 0.98475 0.97234 1.20741 0.93765 0.99324 1.00044 1.21046 0.96969 0.99474 0.95671 1.18007 0.93680 0.96235 0.95164 1.21265 0.95555 1.02560 0.97442 1.20415 0.91883 0.98612 0.99220 1.17258 0.87181 1.02486 0.97336 1.91039 1.64687 1.71976 1.85354 0.89749 0.87102 0.87782 0.85798 0.86113 0.86215 0.86677 0.86595 0.86010 0.85795 0.87325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.57 13.93 55.55 0.77 -18.80 16 2 C 0.09 2.24 4.72 -17.32 -0.08 2.16 16 3 Si 0.92 20.87 25.37 -169.99 -4.31 16.56 16 4 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.24 -5.65 5.31 56.52 0.30 -5.35 16 6 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.43 -11.12 9.37 -37.91 -0.36 -11.47 16 8 H 0.10 2.64 8.06 -52.48 -0.42 2.21 16 9 C 0.07 1.69 4.87 -106.73 -0.52 1.17 16 10 C -0.20 -4.27 9.73 -39.30 -0.38 -4.65 16 11 C -0.06 -1.23 9.35 -39.64 -0.37 -1.60 16 12 C -0.19 -3.84 5.90 -104.65 -0.62 -4.46 16 13 C 0.02 0.45 5.87 -104.91 -0.62 -0.17 16 14 C -0.12 -1.80 9.32 -39.58 -0.37 -2.17 16 15 C -0.11 -1.48 9.73 -39.54 -0.38 -1.86 16 16 C -0.08 -1.13 5.75 -106.75 -0.61 -1.74 16 17 C -0.10 -1.21 9.76 -39.49 -0.39 -1.59 16 18 C -0.14 -1.57 9.95 -39.91 -0.40 -1.97 16 19 C -0.12 -1.41 9.95 -39.93 -0.40 -1.81 16 20 C -0.11 -1.52 9.77 -39.43 -0.39 -1.91 16 21 C -0.03 -0.48 5.74 -106.84 -0.61 -1.09 16 22 C -0.15 -2.54 9.17 -38.70 -0.36 -2.90 16 23 C -0.08 -1.78 9.32 -39.60 -0.37 -2.15 16 24 C -0.02 -0.55 4.96 -39.08 -0.19 -0.74 16 25 F -0.15 -3.74 12.78 2.25 0.03 -3.71 16 26 H 0.29 6.70 8.30 -40.82 -0.34 6.36 16 27 H 0.11 2.18 8.06 -52.49 -0.42 1.76 16 28 H 0.10 1.70 6.12 -52.49 -0.32 1.38 16 29 H 0.12 1.71 6.12 -52.48 -0.32 1.38 16 30 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.12 2.01 6.13 -52.48 -0.32 1.68 16 36 H 0.11 2.12 6.14 -52.48 -0.32 1.79 16 LS Contribution 304.02 15.07 4.58 4.58 Total: -1.00 -26.93 304.02 -9.82 -36.75 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -3.48 Total: 3.57 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: -7.41 Total: -38.95 kcal Atomic # 7 Polarization: -19.57 SS G_CDS: 0.77 Total: -18.80 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.03 Total: -3.71 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.31 Total: 16.56 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.93 -9.82 -36.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240910181.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.804 kcal (2) G-P(sol) polarization free energy of solvation -26.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds