Wall clock time and date at job start Tue Mar 31 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30816 * 1 3 3 Si 1.86794 * 120.00212 * 2 1 4 4 H 1.48499 * 109.47443 * 87.60485 * 3 2 1 5 5 H 1.48501 * 109.47007 * 207.60829 * 3 2 1 6 6 H 1.48499 * 109.47065 * 327.60589 * 3 2 1 7 7 C 1.39999 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00014 * 330.97934 * 7 2 1 9 9 C 1.40917 * 120.00210 * 150.97555 * 7 2 1 10 10 C 1.40955 * 120.13290 * 144.99020 * 9 7 2 11 11 C 1.36164 * 119.90638 * 180.02562 * 10 9 7 12 12 C 1.40071 * 120.17940 * 0.02562 * 11 10 9 13 13 C 1.47914 * 119.86618 * 179.97438 * 12 11 10 14 14 C 1.40645 * 119.74829 * 0.02562 * 13 12 11 15 15 C 1.35695 * 120.84852 * 180.02562 * 14 13 12 16 16 C 1.40749 * 120.02740 * 359.97438 * 15 14 13 17 17 C 1.40446 * 121.04112 * 180.02562 * 16 15 14 18 18 C 1.36178 * 119.72111 * 179.97438 * 17 16 15 19 19 C 1.39359 * 121.01319 * 0.04593 * 18 17 16 20 20 C 1.36098 * 120.94986 * 359.95629 * 19 18 17 21 21 C 1.40682 * 119.65573 * 0.02562 * 20 19 18 22 22 C 1.38563 * 119.74928 * 179.72347 * 13 12 11 23 23 C 1.39828 * 120.26585 * 359.97438 * 12 11 10 24 24 C 1.36539 * 120.09856 * 359.75587 * 23 12 11 25 25 F 1.35098 * 120.09381 * 180.27759 * 24 23 12 26 26 H 0.97004 * 120.00008 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.05057 * 0.02777 * 10 9 7 28 28 H 1.07997 * 119.91705 * 179.97438 * 11 10 9 29 29 H 1.08004 * 119.57316 * 359.97438 * 14 13 12 30 30 H 1.08002 * 119.98250 * 179.97438 * 15 14 13 31 31 H 1.07997 * 120.13884 * 359.95556 * 17 16 15 32 32 H 1.08001 * 119.49346 * 180.02562 * 18 17 16 33 33 H 1.07996 * 119.52398 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.17204 * 180.02562 * 20 19 18 35 35 H 1.08008 * 120.27414 * 0.02562 * 22 13 12 36 36 H 1.08011 * 119.94967 * 180.02562 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6176 0.0000 4 1 2.4391 2.0756 1.3988 5 1 3.5641 1.4259 -0.6488 6 1 1.4659 2.6374 -0.7501 7 6 2.0081 -1.2124 0.0005 8 1 1.5698 -2.0889 0.4547 9 6 3.2846 -1.2894 -0.5915 10 6 4.2737 -2.1251 -0.0347 11 6 5.5057 -2.1956 -0.6102 12 6 5.7929 -1.4394 -1.7538 13 6 7.1337 -1.5208 -2.3730 14 6 8.1130 -2.3584 -1.8094 15 6 9.3504 -2.4497 -2.3588 16 6 9.6679 -1.7012 -3.5078 17 6 10.9416 -1.7799 -4.0942 18 6 11.2196 -1.0442 -5.2060 19 6 10.2584 -0.2102 -5.7740 20 6 9.0133 -0.1078 -5.2339 21 6 8.6893 -0.8530 -4.0855 22 6 7.4135 -0.7762 -3.5075 23 6 4.8173 -0.6080 -2.3123 24 6 3.5764 -0.5331 -1.7474 25 9 2.6321 0.2660 -2.2904 26 1 -0.4850 0.8401 -0.0004 27 1 4.0547 -2.7088 0.8473 28 1 6.2637 -2.8355 -0.1835 29 1 7.8774 -2.9356 -0.9275 30 1 10.0919 -3.0970 -1.9143 31 1 11.6975 -2.4209 -3.6652 32 1 12.2001 -1.1079 -5.6542 33 1 10.5049 0.3628 -6.6555 34 1 8.2780 0.5421 -5.6847 35 1 6.6572 -0.1376 -3.9399 36 1 5.0442 -0.0275 -3.1944 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240910181.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:25 Heat of formation + Delta-G solvation = 1.814204 kcal Electronic energy + Delta-G solvation = -21397.841086 eV Core-core repulsion = 18110.893748 eV Total energy + Delta-G solvation = -3286.947338 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.65191 -41.19002 -39.54054 -37.24357 -35.63927 -33.79819 -32.78800 -31.55616 -30.59490 -29.84000 -26.97227 -24.50379 -23.98190 -23.19447 -22.27948 -22.01506 -19.89204 -18.59999 -18.17165 -17.52485 -17.27375 -16.73833 -16.64070 -16.22782 -15.70872 -15.49900 -14.98888 -14.89031 -14.56214 -14.54600 -14.14124 -13.98046 -13.78801 -13.62767 -13.40465 -13.06434 -12.94862 -12.64616 -12.12086 -12.02643 -11.97594 -11.78512 -11.56446 -11.38364 -11.16429 -10.83989 -9.98385 -9.56668 -9.10567 -9.08477 -8.55396 -6.51617 -0.44661 -0.00952 0.66770 0.74356 1.21302 1.24599 1.37504 1.37933 2.06069 2.14581 2.55311 3.18658 3.43486 3.70036 3.73678 3.94892 4.02468 4.13229 4.15979 4.32632 4.34379 4.40121 4.52146 4.55251 4.69032 4.79421 4.84552 4.95726 5.10710 5.12412 5.19234 5.35639 5.40010 5.46278 5.51259 5.57529 5.66835 5.72892 5.81843 6.01301 6.02020 6.04057 6.20422 6.21106 6.53951 6.67260 7.95743 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.029996 B = 0.003836 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.245223 B = 7296.825098 C = 7902.859829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.063 3.937 3 Si 0.961 3.039 4 H -0.275 1.275 5 H -0.255 1.255 6 H -0.268 1.268 7 C -0.484 4.484 8 H 0.075 0.925 9 C 0.052 3.948 10 C -0.197 4.197 11 C -0.065 4.065 12 C -0.162 4.162 13 C -0.010 4.010 14 C -0.127 4.127 15 C -0.098 4.098 16 C -0.087 4.087 17 C -0.106 4.106 18 C -0.131 4.131 19 C -0.116 4.116 20 C -0.132 4.132 21 C -0.057 4.057 22 C -0.149 4.149 23 C -0.099 4.099 24 C -0.045 4.045 25 F -0.162 7.162 26 H 0.298 0.702 27 H 0.125 0.875 28 H 0.145 0.855 29 H 0.141 0.859 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.298 -1.259 -6.773 21.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.157 4.157 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.179 1.179 6 H -0.193 1.193 7 C -0.511 4.511 8 H 0.093 0.907 9 C 0.049 3.951 10 C -0.216 4.216 11 C -0.082 4.082 12 C -0.163 4.163 13 C -0.010 4.010 14 C -0.145 4.145 15 C -0.115 4.115 16 C -0.087 4.087 17 C -0.123 4.123 18 C -0.149 4.149 19 C -0.133 4.133 20 C -0.150 4.150 21 C -0.057 4.057 22 C -0.167 4.167 23 C -0.118 4.118 24 C -0.064 4.064 25 F -0.141 7.141 26 H 0.108 0.892 27 H 0.143 0.857 28 H 0.163 0.837 29 H 0.159 0.841 30 H 0.175 0.825 31 H 0.168 0.832 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.148 0.852 35 H 0.138 0.862 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 19.939 -1.150 -6.780 21.092 hybrid contribution -1.115 0.903 0.005 1.435 sum 18.824 -0.247 -6.776 20.008 Atomic orbital electron populations 1.69774 1.09411 1.32053 1.32429 1.26864 0.95102 1.04324 0.89419 0.85549 0.81299 0.76760 0.77965 1.20176 1.17928 1.19263 1.19357 0.99420 0.97761 1.34561 0.90696 1.17992 0.93688 0.92978 0.90441 1.20892 0.92898 1.05585 1.02200 1.20944 0.96433 0.97007 0.93854 1.18268 0.93328 1.04399 1.00301 1.18835 0.92272 0.95783 0.94156 1.21130 0.93148 0.99117 1.01075 1.21235 0.96866 0.98716 0.94707 1.18443 0.94896 0.98284 0.97049 1.21338 0.95054 0.99670 0.96281 1.21204 1.00530 0.96745 0.96416 1.21172 0.92929 0.98801 1.00438 1.21265 0.98342 0.99890 0.95521 1.18246 0.93480 0.97641 0.96372 1.21426 0.96383 1.01773 0.97084 1.20687 0.91476 0.99580 1.00025 1.17599 0.87951 1.03062 0.97821 1.90999 1.65282 1.72331 1.85498 0.89155 0.85664 0.83727 0.84127 0.82544 0.83156 0.83283 0.83754 0.85215 0.86208 0.85824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.27 13.93 21.84 0.30 -43.97 16 2 C 0.06 3.39 4.72 85.27 0.40 3.79 16 3 Si 0.96 44.60 25.37 68.60 1.74 46.34 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.26 -12.24 5.31 99.48 0.53 -11.71 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.48 -26.67 9.37 23.35 0.22 -26.45 16 8 H 0.08 4.31 8.06 -2.91 -0.02 4.29 16 9 C 0.05 2.65 4.87 -21.23 -0.10 2.54 16 10 C -0.20 -8.47 9.73 22.45 0.22 -8.26 16 11 C -0.06 -2.41 9.35 22.23 0.21 -2.20 16 12 C -0.16 -6.32 5.90 -19.88 -0.12 -6.44 16 13 C -0.01 -0.35 5.87 -20.05 -0.12 -0.47 16 14 C -0.13 -3.48 9.32 22.27 0.21 -3.27 16 15 C -0.10 -2.28 9.73 22.29 0.22 -2.06 16 16 C -0.09 -2.18 5.75 -21.24 -0.12 -2.30 16 17 C -0.11 -2.01 9.76 22.33 0.22 -1.79 16 18 C -0.13 -2.23 9.95 22.06 0.22 -2.01 16 19 C -0.12 -2.18 9.95 22.04 0.22 -1.96 16 20 C -0.13 -3.16 9.77 22.37 0.22 -2.94 16 21 C -0.06 -1.64 5.74 -21.30 -0.12 -1.76 16 22 C -0.15 -4.80 9.17 22.84 0.21 -4.59 16 23 C -0.10 -4.29 9.32 22.26 0.21 -4.09 16 24 C -0.04 -2.21 4.96 22.60 0.11 -2.10 16 25 F -0.16 -8.35 12.78 44.97 0.57 -7.77 16 26 H 0.30 14.57 8.30 -92.71 -0.77 13.80 16 27 H 0.13 4.93 8.06 -2.91 -0.02 4.91 16 28 H 0.15 4.20 6.12 -2.91 -0.02 4.18 16 29 H 0.14 3.27 6.12 -2.91 -0.02 3.25 16 30 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 31 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 33 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 35 H 0.12 3.81 6.13 -2.91 -0.02 3.80 16 36 H 0.12 4.85 6.14 -2.90 -0.02 4.84 16 Total: -1.00 -62.25 304.02 5.85 -56.40 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.94 Total: 15.35 kcal Atomic # 6 Polarization: -68.65 SS G_CDS: 2.29 Total: -66.35 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.30 Total: -43.97 kcal Atomic # 9 Polarization: -8.35 SS G_CDS: 0.57 Total: -7.77 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.74 Total: 46.34 kcal Total: -62.25 5.85 -56.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240910181.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.211 kcal (2) G-P(sol) polarization free energy of solvation -62.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds