Wall clock time and date at job start Tue Mar 31 2020 06:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30787 * 1 3 3 Si 1.86798 * 120.00154 * 2 1 4 4 H 1.48506 * 109.47331 * 239.72476 * 3 2 1 5 5 H 1.48511 * 109.47154 * 359.72131 * 3 2 1 6 6 H 1.48497 * 109.47596 * 119.71813 * 3 2 1 7 7 C 1.40073 * 120.00046 * 179.71937 * 2 1 3 8 8 H 1.07999 * 120.00155 * 156.03622 * 7 2 1 9 9 C 1.40762 * 119.99947 * 336.03788 * 7 2 1 10 10 C 1.41043 * 120.34678 * 323.38642 * 9 7 2 11 11 F 1.35097 * 120.10209 * 0.02562 * 10 9 7 12 12 C 1.37727 * 119.79947 * 179.78912 * 10 9 7 13 13 C 1.38830 * 120.53016 * 0.46732 * 12 10 9 14 14 C 1.38111 * 120.72059 * 359.78595 * 13 12 10 15 15 C 1.39106 * 120.17593 * 359.97438 * 14 13 12 16 16 C 1.47806 * 120.26485 * 180.02562 * 15 14 13 17 17 C 1.40685 * 119.75360 * 129.97693 * 16 15 14 18 18 C 1.35680 * 120.84863 * 180.02562 * 17 16 15 19 19 C 1.40760 * 120.03046 * 359.97438 * 18 17 16 20 20 C 1.40438 * 121.03638 * 180.02562 * 19 18 17 21 21 C 1.36181 * 119.72433 * 179.97438 * 20 19 18 22 22 C 1.39349 * 121.01237 * 0.04324 * 21 20 19 23 23 C 1.36097 * 120.94921 * 359.95594 * 22 21 20 24 24 C 1.40678 * 119.66284 * 0.02562 * 23 22 21 25 25 C 1.38607 * 119.75492 * 309.70561 * 16 15 14 26 26 H 0.97000 * 120.00087 * 174.87520 * 1 2 3 27 27 H 1.07998 * 119.73515 * 180.22936 * 12 10 9 28 28 H 1.07995 * 119.64047 * 179.76030 * 13 12 10 29 29 H 1.08004 * 119.91105 * 179.97438 * 14 13 12 30 30 H 1.08004 * 119.57509 * 359.97438 * 17 16 15 31 31 H 1.07999 * 119.98715 * 179.97438 * 18 17 16 32 32 H 1.07994 * 120.13855 * 359.97438 * 20 19 18 33 33 H 1.08006 * 119.49255 * 180.02562 * 21 20 19 34 34 H 1.07999 * 119.52521 * 179.97438 * 22 21 20 35 35 H 1.07998 * 120.17110 * 180.02562 * 23 22 21 36 36 H 1.08001 * 120.27940 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.1007 1.6935 -1.2092 5 1 1.2769 2.7465 -0.0068 6 1 3.0905 1.6994 1.2159 7 6 2.0082 -1.2130 0.0059 8 1 3.0184 -1.2552 -0.3737 9 6 1.3954 -2.3771 0.5067 10 6 0.5309 -2.3052 1.6188 11 9 0.2853 -1.1157 2.2104 12 6 -0.0661 -3.4506 2.0968 13 6 0.1836 -4.6784 1.4987 14 6 1.0304 -4.7746 0.4120 15 6 1.6454 -3.6359 -0.0982 16 6 2.5517 -3.7365 -1.2615 17 6 2.3754 -2.8758 -2.3603 18 6 3.1940 -2.9492 -3.4398 19 6 4.2363 -3.8947 -3.4705 20 6 5.0963 -3.9887 -4.5768 21 6 6.0964 -4.9130 -4.5781 22 6 6.2817 -5.7718 -3.4964 23 6 5.4685 -5.7105 -2.4068 24 6 4.4246 -4.7682 -2.3692 25 6 3.5723 -4.6743 -1.2593 26 1 -0.4850 -0.8367 -0.0750 27 1 -0.7309 -3.3938 2.9461 28 1 -0.2893 -5.5680 1.8877 29 1 1.2157 -5.7364 -0.0429 30 1 1.5778 -2.1478 -2.3446 31 1 3.0459 -2.2818 -4.2759 32 1 4.9652 -3.3306 -5.4230 33 1 6.7559 -4.9817 -5.4306 34 1 7.0823 -6.4961 -3.5230 35 1 5.6237 -6.3819 -1.5753 36 1 3.7074 -5.3301 -0.4119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240910610.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:20 Heat of formation + Delta-G solvation = 2.468474 kcal Electronic energy + Delta-G solvation = -21989.712270 eV Core-core repulsion = 18702.793303 eV Total energy + Delta-G solvation = -3286.918967 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.32417 -39.88505 -37.85323 -35.69067 -34.02402 -32.41250 -31.07594 -29.45739 -29.11925 -27.75620 -25.19290 -23.28957 -22.57638 -21.63240 -20.98535 -20.37451 -18.08385 -17.09350 -16.56352 -16.06200 -15.11884 -15.08923 -14.82326 -14.30231 -14.10915 -14.06661 -13.75189 -13.22055 -13.04825 -12.98594 -12.84945 -12.40245 -12.29101 -11.89763 -11.47770 -11.25561 -11.02830 -10.87486 -10.82533 -10.62433 -10.45176 -10.37220 -10.23793 -9.58388 -9.54337 -9.02859 -8.28573 -7.79831 -7.54509 -7.35042 -7.18960 -4.61287 0.90872 1.39238 2.28807 2.54711 2.58426 3.12767 3.20047 3.33353 3.46787 3.96370 4.40842 4.57161 4.94074 5.08212 5.12066 5.22105 5.41449 5.46363 5.56947 5.73769 5.79363 5.82184 5.88265 5.98175 6.08612 6.18096 6.31338 6.37890 6.50833 6.64904 6.67443 6.75237 6.80294 7.02158 7.16134 7.19057 7.22639 7.27470 7.43869 7.60351 7.62085 7.64512 7.83839 8.03854 8.49448 8.62596 9.93807 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016261 B = 0.005657 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.464093 B = 4948.241304 C = 6251.729854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.039 3.961 3 Si 1.064 2.936 4 H -0.274 1.274 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.505 4.505 8 H 0.085 0.915 9 C 0.084 3.916 10 C -0.005 4.005 11 F -0.146 7.146 12 C -0.115 4.115 13 C -0.225 4.225 14 C -0.071 4.071 15 C -0.164 4.164 16 C 0.029 3.971 17 C -0.073 4.073 18 C -0.126 4.126 19 C -0.062 4.062 20 C -0.103 4.103 21 C -0.136 4.136 22 C -0.128 4.128 23 C -0.109 4.109 24 C -0.043 4.043 25 C -0.134 4.134 26 H 0.294 0.706 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.130 0.870 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.636 -6.101 -5.726 10.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.185 4.185 3 Si 0.887 3.113 4 H -0.200 1.200 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.532 4.532 8 H 0.103 0.897 9 C 0.080 3.920 10 C -0.026 4.026 11 F -0.125 7.125 12 C -0.135 4.135 13 C -0.245 4.245 14 C -0.089 4.089 15 C -0.166 4.166 16 C 0.029 3.971 17 C -0.090 4.090 18 C -0.144 4.144 19 C -0.062 4.062 20 C -0.121 4.121 21 C -0.154 4.154 22 C -0.146 4.146 23 C -0.127 4.127 24 C -0.043 4.043 25 C -0.152 4.152 26 H 0.106 0.894 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.148 0.852 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 6.355 -4.389 -5.655 9.572 hybrid contribution 0.066 -1.557 0.207 1.572 sum 6.420 -5.946 -5.449 10.308 Atomic orbital electron populations 1.70409 1.08168 1.33893 1.26798 1.27000 0.95507 1.04273 0.91684 0.83633 0.75726 0.73855 0.78113 1.19988 1.19694 1.19875 1.20402 1.02595 0.93233 1.36925 0.89657 1.17552 0.91066 0.93066 0.90298 1.17861 1.07215 0.80495 0.96980 1.91384 1.93330 1.44886 1.82920 1.20671 1.00163 0.92452 1.00190 1.20075 1.07004 0.95816 1.01580 1.20698 0.96463 0.96160 0.95577 1.18436 1.06252 0.93446 0.98429 1.18724 0.92907 0.92748 0.92741 1.21135 0.98814 0.97338 0.91761 1.20862 0.95781 0.98742 0.99034 1.18081 0.96836 0.96930 0.94360 1.20970 0.95184 0.98534 0.97366 1.20691 0.98930 0.97106 0.98648 1.20690 0.99837 0.99787 0.94271 1.21008 0.95138 0.98184 0.98345 1.17996 0.96104 0.96029 0.94210 1.21338 0.95559 1.00838 0.97497 0.89350 0.87865 0.88046 0.88265 0.85214 0.86231 0.86240 0.86784 0.86746 0.86178 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.12 12.02 55.55 0.67 -19.46 16 2 C 0.04 0.97 4.36 -17.31 -0.08 0.90 16 3 Si 1.06 21.69 30.00 -169.99 -5.10 16.59 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.50 -12.67 6.59 -37.94 -0.25 -12.92 16 8 H 0.09 2.14 7.25 -52.49 -0.38 1.76 16 9 C 0.08 2.10 5.02 -106.49 -0.53 1.56 16 10 C -0.01 -0.14 6.13 -38.71 -0.24 -0.37 16 11 F -0.15 -3.86 14.40 2.25 0.03 -3.82 16 12 C -0.12 -2.55 9.99 -39.55 -0.40 -2.95 16 13 C -0.23 -4.61 10.02 -39.41 -0.40 -5.00 16 14 C -0.07 -1.46 9.47 -39.31 -0.37 -1.83 16 15 C -0.16 -3.71 5.50 -104.27 -0.57 -4.28 16 16 C 0.03 0.60 4.96 -104.92 -0.52 0.08 16 17 C -0.07 -1.44 8.10 -39.57 -0.32 -1.76 16 18 C -0.13 -2.19 9.73 -39.54 -0.38 -2.58 16 19 C -0.06 -1.05 5.75 -106.75 -0.61 -1.66 16 20 C -0.10 -1.45 9.76 -39.49 -0.39 -1.83 16 21 C -0.14 -1.73 9.95 -39.91 -0.40 -2.12 16 22 C -0.13 -1.64 9.95 -39.94 -0.40 -2.04 16 23 C -0.11 -1.57 9.77 -39.43 -0.39 -1.96 16 24 C -0.04 -0.75 5.74 -106.85 -0.61 -1.36 16 25 C -0.13 -2.48 9.24 -38.69 -0.36 -2.84 16 26 H 0.29 7.88 7.01 -40.82 -0.29 7.59 16 27 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 28 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 29 H 0.10 1.81 8.03 -52.48 -0.42 1.39 16 30 H 0.13 2.75 7.27 -52.48 -0.38 2.36 16 31 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.11 1.13 8.06 -52.48 -0.42 0.71 16 34 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 36 H 0.12 2.07 8.03 -52.49 -0.42 1.65 16 LS Contribution 311.75 15.07 4.70 4.70 Total: -1.00 -26.91 311.75 -10.56 -37.47 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -3.65 Total: 7.51 kcal Atomic # 6 Polarization: -35.77 SS G_CDS: -7.21 Total: -42.98 kcal Atomic # 7 Polarization: -20.12 SS G_CDS: 0.67 Total: -19.46 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.03 Total: -3.82 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.10 Total: 16.59 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.91 -10.56 -37.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240910610.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.936 kcal (2) G-P(sol) polarization free energy of solvation -26.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds