Wall clock time and date at job start Tue Mar 31 2020 06:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30787 * 1 3 3 Si 1.86798 * 120.00154 * 2 1 4 4 H 1.48506 * 109.47331 * 239.72476 * 3 2 1 5 5 H 1.48511 * 109.47154 * 359.72131 * 3 2 1 6 6 H 1.48497 * 109.47596 * 119.71813 * 3 2 1 7 7 C 1.40073 * 120.00046 * 179.71937 * 2 1 3 8 8 H 1.07999 * 120.00155 * 156.03622 * 7 2 1 9 9 C 1.40762 * 119.99947 * 336.03788 * 7 2 1 10 10 C 1.41043 * 120.34678 * 323.38642 * 9 7 2 11 11 F 1.35097 * 120.10209 * 0.02562 * 10 9 7 12 12 C 1.37727 * 119.79947 * 179.78912 * 10 9 7 13 13 C 1.38830 * 120.53016 * 0.46732 * 12 10 9 14 14 C 1.38111 * 120.72059 * 359.78595 * 13 12 10 15 15 C 1.39106 * 120.17593 * 359.97438 * 14 13 12 16 16 C 1.47806 * 120.26485 * 180.02562 * 15 14 13 17 17 C 1.40685 * 119.75360 * 129.97693 * 16 15 14 18 18 C 1.35680 * 120.84863 * 180.02562 * 17 16 15 19 19 C 1.40760 * 120.03046 * 359.97438 * 18 17 16 20 20 C 1.40438 * 121.03638 * 180.02562 * 19 18 17 21 21 C 1.36181 * 119.72433 * 179.97438 * 20 19 18 22 22 C 1.39349 * 121.01237 * 0.04324 * 21 20 19 23 23 C 1.36097 * 120.94921 * 359.95594 * 22 21 20 24 24 C 1.40678 * 119.66284 * 0.02562 * 23 22 21 25 25 C 1.38607 * 119.75492 * 309.70561 * 16 15 14 26 26 H 0.97000 * 120.00087 * 174.87520 * 1 2 3 27 27 H 1.07998 * 119.73515 * 180.22936 * 12 10 9 28 28 H 1.07995 * 119.64047 * 179.76030 * 13 12 10 29 29 H 1.08004 * 119.91105 * 179.97438 * 14 13 12 30 30 H 1.08004 * 119.57509 * 359.97438 * 17 16 15 31 31 H 1.07999 * 119.98715 * 179.97438 * 18 17 16 32 32 H 1.07994 * 120.13855 * 359.97438 * 20 19 18 33 33 H 1.08006 * 119.49255 * 180.02562 * 21 20 19 34 34 H 1.07999 * 119.52521 * 179.97438 * 22 21 20 35 35 H 1.07998 * 120.17110 * 180.02562 * 23 22 21 36 36 H 1.08001 * 120.27940 * 359.97438 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 3.1007 1.6935 -1.2092 5 1 1.2769 2.7465 -0.0068 6 1 3.0905 1.6994 1.2159 7 6 2.0082 -1.2130 0.0059 8 1 3.0184 -1.2552 -0.3737 9 6 1.3954 -2.3771 0.5067 10 6 0.5309 -2.3052 1.6188 11 9 0.2853 -1.1157 2.2104 12 6 -0.0661 -3.4506 2.0968 13 6 0.1836 -4.6784 1.4987 14 6 1.0304 -4.7746 0.4120 15 6 1.6454 -3.6359 -0.0982 16 6 2.5517 -3.7365 -1.2615 17 6 2.3754 -2.8758 -2.3603 18 6 3.1940 -2.9492 -3.4398 19 6 4.2363 -3.8947 -3.4705 20 6 5.0963 -3.9887 -4.5768 21 6 6.0964 -4.9130 -4.5781 22 6 6.2817 -5.7718 -3.4964 23 6 5.4685 -5.7105 -2.4068 24 6 4.4246 -4.7682 -2.3692 25 6 3.5723 -4.6743 -1.2593 26 1 -0.4850 -0.8367 -0.0750 27 1 -0.7309 -3.3938 2.9461 28 1 -0.2893 -5.5680 1.8877 29 1 1.2157 -5.7364 -0.0429 30 1 1.5778 -2.1478 -2.3446 31 1 3.0459 -2.2818 -4.2759 32 1 4.9652 -3.3306 -5.4230 33 1 6.7559 -4.9817 -5.4306 34 1 7.0823 -6.4961 -3.5230 35 1 5.6237 -6.3819 -1.5753 36 1 3.7074 -5.3301 -0.4119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240910610.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:20 Heat of formation + Delta-G solvation = -7.536412 kcal Electronic energy + Delta-G solvation = -21990.146114 eV Core-core repulsion = 18702.793303 eV Total energy + Delta-G solvation = -3287.352811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.26445 -41.17203 -39.47432 -37.03533 -35.82041 -33.70539 -32.54348 -31.18146 -30.43010 -29.22047 -26.98123 -24.68068 -23.92086 -23.04116 -22.53934 -21.95941 -19.88803 -18.48545 -17.88349 -17.49718 -16.85528 -16.67829 -16.41434 -16.00691 -15.73018 -15.52528 -15.11634 -14.77229 -14.48355 -14.27814 -14.20366 -14.07447 -13.75771 -13.51395 -12.96834 -12.80796 -12.66556 -12.48424 -12.25363 -12.03202 -12.00891 -11.77546 -11.63982 -11.25806 -10.87788 -10.78397 -9.81122 -9.44020 -9.21222 -9.12721 -8.59615 -6.49284 -0.34787 0.07976 0.69504 0.76405 1.24015 1.44559 1.56157 1.72336 2.18750 2.28420 2.64619 3.20827 3.36290 3.76211 3.85804 4.03777 4.05959 4.14790 4.21839 4.31930 4.37936 4.48058 4.55743 4.57498 4.68471 4.72278 4.96228 5.00905 5.10522 5.21987 5.36195 5.39729 5.42813 5.53106 5.61413 5.68457 5.71296 5.75467 5.82152 5.90211 6.00133 6.05923 6.22701 6.24965 6.67556 6.81060 8.02920 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016261 B = 0.005657 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.464093 B = 4948.241304 C = 6251.729854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.008 3.992 3 Si 1.104 2.896 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.529 4.529 8 H 0.073 0.927 9 C 0.057 3.943 10 C -0.043 4.043 11 F -0.163 7.163 12 C -0.123 4.123 13 C -0.207 4.207 14 C -0.079 4.079 15 C -0.160 4.160 16 C -0.007 4.007 17 C -0.098 4.098 18 C -0.119 4.119 19 C -0.077 4.077 20 C -0.114 4.114 21 C -0.123 4.123 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.064 4.064 25 C -0.126 4.126 26 H 0.275 0.725 27 H 0.124 0.876 28 H 0.141 0.859 29 H 0.129 0.871 30 H 0.100 0.900 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.139 0.861 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.274 -8.624 -7.345 14.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.210 4.210 3 Si 0.922 3.078 4 H -0.178 1.178 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.557 4.557 8 H 0.091 0.909 9 C 0.054 3.946 10 C -0.063 4.063 11 F -0.142 7.142 12 C -0.142 4.142 13 C -0.226 4.226 14 C -0.097 4.097 15 C -0.161 4.161 16 C -0.007 4.007 17 C -0.116 4.116 18 C -0.137 4.137 19 C -0.077 4.077 20 C -0.132 4.132 21 C -0.141 4.141 22 C -0.135 4.135 23 C -0.138 4.138 24 C -0.064 4.064 25 C -0.144 4.144 26 H 0.087 0.913 27 H 0.142 0.858 28 H 0.159 0.841 29 H 0.147 0.853 30 H 0.119 0.881 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.169 0.831 34 H 0.169 0.831 35 H 0.157 0.843 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.998 -6.935 -7.279 13.493 hybrid contribution -0.570 -1.130 0.571 1.388 sum 8.428 -8.065 -6.709 13.457 Atomic orbital electron populations 1.70521 1.08866 1.32497 1.30570 1.28133 0.95520 1.06996 0.90329 0.83166 0.75029 0.70672 0.78972 1.17836 1.19511 1.19489 1.20305 1.02258 0.94133 1.39023 0.90920 1.17907 0.91773 0.94278 0.90687 1.18287 1.09110 0.80888 0.98024 1.91320 1.93616 1.46056 1.83217 1.20995 1.00153 0.92173 1.00848 1.20584 1.05288 0.96380 1.00330 1.21093 0.96010 0.96860 0.95758 1.18874 1.05604 0.93193 0.98444 1.18725 0.94460 0.94852 0.92669 1.20918 0.99592 0.97791 0.93285 1.21094 0.95144 0.98894 0.98569 1.18373 0.97120 0.96670 0.95511 1.21267 0.95092 0.99656 0.97137 1.21205 0.98085 0.95321 0.99501 1.21188 0.99589 0.99604 0.93132 1.21271 0.94624 0.97990 0.99955 1.18263 0.96944 0.97231 0.93916 1.21469 0.94905 0.99742 0.98318 0.91333 0.85812 0.84095 0.85306 0.88137 0.84172 0.83935 0.83085 0.83118 0.84285 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -44.76 12.02 21.85 0.26 -44.50 16 2 C 0.01 0.40 4.36 85.29 0.37 0.77 16 3 Si 1.10 45.65 30.00 68.60 2.06 47.71 16 4 H -0.25 -9.53 7.11 99.48 0.71 -8.83 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.53 -28.41 6.59 23.33 0.15 -28.26 16 8 H 0.07 3.93 7.25 -2.91 -0.02 3.91 16 9 C 0.06 3.00 5.02 -21.07 -0.11 2.90 16 10 C -0.04 -2.26 6.13 22.84 0.14 -2.12 16 11 F -0.16 -9.11 14.40 44.97 0.65 -8.46 16 12 C -0.12 -5.46 9.99 22.29 0.22 -5.23 16 13 C -0.21 -8.12 10.02 22.38 0.22 -7.90 16 14 C -0.08 -3.22 9.47 22.45 0.21 -3.00 16 15 C -0.16 -7.45 5.50 -19.64 -0.11 -7.55 16 16 C -0.01 -0.30 4.96 -20.06 -0.10 -0.40 16 17 C -0.10 -4.09 8.10 22.27 0.18 -3.91 16 18 C -0.12 -4.16 9.73 22.29 0.22 -3.95 16 19 C -0.08 -2.46 5.75 -21.24 -0.12 -2.59 16 20 C -0.11 -2.80 9.76 22.33 0.22 -2.58 16 21 C -0.12 -2.49 9.95 22.06 0.22 -2.27 16 22 C -0.12 -2.41 9.95 22.04 0.22 -2.19 16 23 C -0.12 -3.07 9.77 22.37 0.22 -2.85 16 24 C -0.06 -2.08 5.74 -21.31 -0.12 -2.20 16 25 C -0.13 -4.63 9.24 22.85 0.21 -4.42 16 26 H 0.28 16.02 7.01 -92.71 -0.65 15.37 16 27 H 0.12 4.87 8.06 -2.91 -0.02 4.84 16 28 H 0.14 4.42 8.06 -2.91 -0.02 4.39 16 29 H 0.13 4.42 8.03 -2.91 -0.02 4.40 16 30 H 0.10 4.69 7.27 -2.91 -0.02 4.67 16 31 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 32 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 33 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 34 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 35 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 36 H 0.13 4.34 8.03 -2.91 -0.02 4.32 16 Total: -1.00 -63.05 311.75 6.44 -56.62 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 1.22 Total: 26.40 kcal Atomic # 6 Polarization: -80.01 SS G_CDS: 2.25 Total: -77.76 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.26 Total: -44.50 kcal Atomic # 9 Polarization: -9.11 SS G_CDS: 0.65 Total: -8.46 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.06 Total: 47.71 kcal Total: -63.05 6.44 -56.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240910610.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.080 kcal (2) G-P(sol) polarization free energy of solvation -63.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds