Wall clock time and date at job start Tue Mar 31 2020 06:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86803 * 119.99590 * 2 1 4 4 H 1.48492 * 109.47520 * 274.69306 * 3 2 1 5 5 H 1.48499 * 109.47359 * 34.69692 * 3 2 1 6 6 H 1.48504 * 109.46836 * 154.69416 * 3 2 1 7 7 C 1.39922 * 120.00341 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00029 * 197.90141 * 7 2 1 9 9 C 1.41425 * 119.99717 * 17.89883 * 7 2 1 10 10 C 1.40746 * 120.17449 * 24.52679 * 9 7 2 11 11 C 1.37901 * 119.97218 * 179.97438 * 10 9 7 12 12 F 1.35108 * 119.83533 * 179.97438 * 11 10 9 13 13 C 1.38655 * 120.33277 * 359.97438 * 11 10 9 14 14 C 1.39679 * 120.34900 * 0.27901 * 13 11 10 15 15 C 1.48366 * 119.99197 * 179.74669 * 14 13 11 16 16 C 1.40432 * 119.71682 * 179.97438 * 15 14 13 17 17 C 1.35798 * 120.87144 * 179.97438 * 16 15 14 18 18 C 1.40650 * 119.97892 * 359.97438 * 17 16 15 19 19 C 1.40521 * 121.08479 * 180.02562 * 18 17 16 20 20 C 1.36120 * 119.71261 * 179.97438 * 19 18 17 21 21 C 1.39368 * 121.00432 * 359.97200 * 20 19 18 22 22 C 1.36082 * 120.95958 * 0.02562 * 21 20 19 23 23 C 1.40632 * 119.66574 * 359.97438 * 22 21 20 24 24 C 1.38193 * 119.71823 * 359.72341 * 15 14 13 25 25 C 1.38808 * 120.01580 * 359.48441 * 14 13 11 26 26 H 0.96998 * 120.00012 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.01745 * 359.97438 * 10 9 7 28 28 H 1.07998 * 119.82888 * 179.97438 * 13 11 10 29 29 H 1.07999 * 119.56184 * 359.97438 * 16 15 14 30 30 H 1.08000 * 120.01458 * 179.97438 * 17 16 15 31 31 H 1.08002 * 120.14075 * 0.02562 * 19 18 17 32 32 H 1.07997 * 119.49744 * 180.02562 * 20 19 18 33 33 H 1.08004 * 119.51820 * 180.02562 * 21 20 19 34 34 H 1.07997 * 120.16985 * 179.97438 * 22 21 20 35 35 H 1.08003 * 120.26274 * 359.97438 * 24 15 14 36 36 H 1.07994 * 120.16217 * 180.23854 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3906 2.1039 -1.3953 5 1 1.4929 2.6220 0.7970 6 1 3.5859 1.4137 0.5985 7 6 2.0081 -1.2117 -0.0005 8 1 3.0488 -1.2344 0.2869 9 6 1.3523 -2.4067 -0.3775 10 6 0.2232 -2.3597 -1.2165 11 6 -0.4127 -3.5275 -1.5819 12 9 -1.4966 -3.4791 -2.3870 13 6 0.0547 -4.7511 -1.1272 14 6 1.1708 -4.8133 -0.2898 15 6 1.6608 -6.1265 0.1967 16 6 2.7838 -6.1824 1.0380 17 6 3.2520 -7.3715 1.4973 18 6 2.6099 -8.5682 1.1314 19 6 3.0742 -9.8113 1.5936 20 6 2.4311 -10.9522 1.2224 21 6 1.3150 -10.9084 0.3888 22 6 0.8364 -9.7233 -0.0785 23 6 1.4745 -8.5235 0.2835 24 6 1.0051 -7.2839 -0.1778 25 6 1.8250 -3.6472 0.0831 26 1 -0.4850 0.8400 0.0004 27 1 -0.1450 -1.4094 -1.5741 28 1 -0.4498 -5.6606 -1.4181 29 1 3.2818 -5.2675 1.3235 30 1 4.1170 -7.3984 2.1433 31 1 3.9370 -9.8613 2.2412 32 1 2.7906 -11.9057 1.5799 33 1 0.8229 -11.8283 0.1096 34 1 -0.0291 -9.7042 -0.7242 35 1 0.1392 -7.2349 -0.8214 36 1 2.6905 -3.6928 0.7274 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240910621.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:31 Heat of formation + Delta-G solvation = 2.474449 kcal Electronic energy + Delta-G solvation = -21105.143873 eV Core-core repulsion = 17818.225165 eV Total energy + Delta-G solvation = -3286.918708 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.71626 -40.13581 -37.83481 -36.02694 -33.85833 -32.57075 -30.98840 -30.01205 -29.06029 -27.72742 -25.60726 -23.41071 -22.97379 -21.89248 -20.61855 -20.48969 -17.87737 -17.15008 -16.51819 -16.14936 -15.40573 -15.13559 -14.86897 -14.51948 -14.38909 -14.30332 -13.90172 -13.47907 -13.24416 -13.08880 -12.87489 -12.52628 -12.17654 -11.80742 -11.74641 -11.53525 -11.27449 -11.09781 -10.83124 -10.76460 -10.46682 -10.44660 -10.04584 -9.80061 -9.74201 -9.33687 -8.56660 -7.89945 -7.58699 -7.06537 -6.90811 -4.58949 0.65902 1.10709 2.15710 2.56383 2.61729 2.98912 3.03166 3.03383 3.44154 3.80927 4.27048 4.53327 4.73542 4.92535 4.99554 5.11234 5.22692 5.37148 5.42772 5.49047 5.56359 5.61966 5.76753 5.89332 6.09273 6.18891 6.25896 6.32791 6.42331 6.52498 6.58180 6.69697 6.73046 6.82262 6.93010 6.99644 7.07670 7.21977 7.40514 7.54334 7.65439 7.77095 8.05350 8.38958 8.66013 8.67777 10.00396 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024596 B = 0.003648 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.114188 B = 7672.691983 C = 8726.140357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.456 4.456 8 H 0.085 0.915 9 C 0.126 3.874 10 C -0.193 4.193 11 C 0.106 3.894 12 F -0.166 7.166 13 C -0.261 4.261 14 C -0.017 4.017 15 C -0.008 4.008 16 C -0.100 4.100 17 C -0.114 4.114 18 C -0.061 4.061 19 C -0.104 4.104 20 C -0.130 4.130 21 C -0.125 4.125 22 C -0.106 4.106 23 C -0.045 4.045 24 C -0.116 4.116 25 C -0.208 4.208 26 H 0.285 0.715 27 H 0.131 0.869 28 H 0.104 0.896 29 H 0.131 0.869 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.997 -12.637 2.009 13.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.484 4.484 8 H 0.103 0.897 9 C 0.123 3.877 10 C -0.213 4.213 11 C 0.087 3.913 12 F -0.145 7.145 13 C -0.281 4.281 14 C -0.017 4.017 15 C -0.008 4.008 16 C -0.117 4.117 17 C -0.132 4.132 18 C -0.061 4.061 19 C -0.122 4.122 20 C -0.148 4.148 21 C -0.143 4.143 22 C -0.124 4.124 23 C -0.045 4.045 24 C -0.133 4.133 25 C -0.228 4.228 26 H 0.096 0.904 27 H 0.148 0.852 28 H 0.122 0.878 29 H 0.148 0.852 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.746 -12.466 2.003 13.170 hybrid contribution 0.009 0.788 -0.098 0.795 sum 3.755 -11.678 1.905 12.414 Atomic orbital electron populations 1.69812 1.07730 1.29774 1.33565 1.25984 0.94775 1.01686 0.92010 0.86222 0.80569 0.80223 0.79344 1.19152 1.20126 1.18358 1.19618 0.98369 0.90924 1.39534 0.89729 1.17292 0.90179 0.92197 0.87994 1.21390 1.00789 0.96080 1.03072 1.17552 0.85380 0.95008 0.93398 1.91346 1.53597 1.97550 1.71984 1.20287 1.02776 0.95218 1.09774 1.18075 0.95349 0.90815 0.97442 1.19014 0.93882 0.92982 0.94908 1.21084 0.95878 0.98257 0.96516 1.20886 0.99993 0.91599 1.00703 1.18100 0.95859 0.93803 0.98368 1.20992 0.99691 0.91770 0.99722 1.20748 0.96622 0.98144 0.99248 1.20757 0.97118 0.97767 0.98614 1.21050 0.99642 0.91799 0.99876 1.18053 0.95280 0.93691 0.97477 1.21393 1.00418 0.90636 1.00880 1.21159 1.03597 0.91680 1.06320 0.90434 0.85178 0.87753 0.85156 0.85790 0.85988 0.86496 0.86427 0.85817 0.85233 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.59 10.96 55.55 0.61 -18.98 16 2 C 0.07 1.79 5.14 -17.35 -0.09 1.70 16 3 Si 0.91 17.77 29.60 -169.99 -5.03 12.74 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 7 C -0.46 -11.39 9.05 -37.74 -0.34 -11.73 16 8 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 9 C 0.13 3.20 5.57 -106.88 -0.60 2.61 16 10 C -0.19 -4.97 8.67 -38.76 -0.34 -5.31 16 11 C 0.11 2.56 7.28 -39.55 -0.29 2.27 16 12 F -0.17 -3.88 17.26 2.25 0.04 -3.84 16 13 C -0.26 -5.81 9.40 -38.89 -0.37 -6.18 16 14 C -0.02 -0.36 5.87 -104.98 -0.62 -0.97 16 15 C -0.01 -0.15 5.87 -104.92 -0.62 -0.76 16 16 C -0.10 -1.64 9.32 -39.63 -0.37 -2.01 16 17 C -0.11 -1.63 9.74 -39.55 -0.39 -2.01 16 18 C -0.06 -0.89 5.74 -106.78 -0.61 -1.51 16 19 C -0.10 -1.25 9.76 -39.48 -0.39 -1.63 16 20 C -0.13 -1.42 9.95 -39.92 -0.40 -1.82 16 21 C -0.12 -1.40 9.95 -39.94 -0.40 -1.80 16 22 C -0.11 -1.37 9.77 -39.45 -0.39 -1.76 16 23 C -0.05 -0.69 5.74 -106.85 -0.61 -1.31 16 24 C -0.12 -1.95 9.17 -38.80 -0.36 -2.31 16 25 C -0.21 -4.78 9.16 -38.51 -0.35 -5.14 16 26 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 27 H 0.13 3.48 6.15 -52.49 -0.32 3.15 16 28 H 0.10 2.08 6.14 -52.49 -0.32 1.76 16 29 H 0.13 2.04 6.13 -52.49 -0.32 1.72 16 30 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 34 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.13 2.07 6.13 -52.48 -0.32 1.75 16 36 H 0.11 2.19 6.14 -52.49 -0.32 1.87 16 LS Contribution 311.45 15.07 4.69 4.69 Total: -1.00 -27.05 311.45 -10.47 -37.51 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -3.27 Total: 7.53 kcal Atomic # 6 Polarization: -32.15 SS G_CDS: -7.50 Total: -39.65 kcal Atomic # 7 Polarization: -19.59 SS G_CDS: 0.61 Total: -18.98 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.04 Total: -3.84 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.05 -10.47 -37.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240910621.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.988 kcal (2) G-P(sol) polarization free energy of solvation -27.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds