Wall clock time and date at job start Tue Mar 31 2020 06:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86803 * 119.99590 * 2 1 4 4 H 1.48492 * 109.47520 * 274.69306 * 3 2 1 5 5 H 1.48499 * 109.47359 * 34.69692 * 3 2 1 6 6 H 1.48504 * 109.46836 * 154.69416 * 3 2 1 7 7 C 1.39922 * 120.00341 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00029 * 197.90141 * 7 2 1 9 9 C 1.41425 * 119.99717 * 17.89883 * 7 2 1 10 10 C 1.40746 * 120.17449 * 24.52679 * 9 7 2 11 11 C 1.37901 * 119.97218 * 179.97438 * 10 9 7 12 12 F 1.35108 * 119.83533 * 179.97438 * 11 10 9 13 13 C 1.38655 * 120.33277 * 359.97438 * 11 10 9 14 14 C 1.39679 * 120.34900 * 0.27901 * 13 11 10 15 15 C 1.48366 * 119.99197 * 179.74669 * 14 13 11 16 16 C 1.40432 * 119.71682 * 179.97438 * 15 14 13 17 17 C 1.35798 * 120.87144 * 179.97438 * 16 15 14 18 18 C 1.40650 * 119.97892 * 359.97438 * 17 16 15 19 19 C 1.40521 * 121.08479 * 180.02562 * 18 17 16 20 20 C 1.36120 * 119.71261 * 179.97438 * 19 18 17 21 21 C 1.39368 * 121.00432 * 359.97200 * 20 19 18 22 22 C 1.36082 * 120.95958 * 0.02562 * 21 20 19 23 23 C 1.40632 * 119.66574 * 359.97438 * 22 21 20 24 24 C 1.38193 * 119.71823 * 359.72341 * 15 14 13 25 25 C 1.38808 * 120.01580 * 359.48441 * 14 13 11 26 26 H 0.96998 * 120.00012 * 359.97438 * 1 2 3 27 27 H 1.08002 * 120.01745 * 359.97438 * 10 9 7 28 28 H 1.07998 * 119.82888 * 179.97438 * 13 11 10 29 29 H 1.07999 * 119.56184 * 359.97438 * 16 15 14 30 30 H 1.08000 * 120.01458 * 179.97438 * 17 16 15 31 31 H 1.08002 * 120.14075 * 0.02562 * 19 18 17 32 32 H 1.07997 * 119.49744 * 180.02562 * 20 19 18 33 33 H 1.08004 * 119.51820 * 180.02562 * 21 20 19 34 34 H 1.07997 * 120.16985 * 179.97438 * 22 21 20 35 35 H 1.08003 * 120.26274 * 359.97438 * 24 15 14 36 36 H 1.07994 * 120.16217 * 180.23854 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3906 2.1039 -1.3953 5 1 1.4929 2.6220 0.7970 6 1 3.5859 1.4137 0.5985 7 6 2.0081 -1.2117 -0.0005 8 1 3.0488 -1.2344 0.2869 9 6 1.3523 -2.4067 -0.3775 10 6 0.2232 -2.3597 -1.2165 11 6 -0.4127 -3.5275 -1.5819 12 9 -1.4966 -3.4791 -2.3870 13 6 0.0547 -4.7511 -1.1272 14 6 1.1708 -4.8133 -0.2898 15 6 1.6608 -6.1265 0.1967 16 6 2.7838 -6.1824 1.0380 17 6 3.2520 -7.3715 1.4973 18 6 2.6099 -8.5682 1.1314 19 6 3.0742 -9.8113 1.5936 20 6 2.4311 -10.9522 1.2224 21 6 1.3150 -10.9084 0.3888 22 6 0.8364 -9.7233 -0.0785 23 6 1.4745 -8.5235 0.2835 24 6 1.0051 -7.2839 -0.1778 25 6 1.8250 -3.6472 0.0831 26 1 -0.4850 0.8400 0.0004 27 1 -0.1450 -1.4094 -1.5741 28 1 -0.4498 -5.6606 -1.4181 29 1 3.2818 -5.2675 1.3235 30 1 4.1170 -7.3984 2.1433 31 1 3.9370 -9.8613 2.2412 32 1 2.7906 -11.9057 1.5799 33 1 0.8229 -11.8283 0.1096 34 1 -0.0291 -9.7042 -0.7242 35 1 0.1392 -7.2349 -0.8214 36 1 2.6905 -3.6928 0.7274 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240910621.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:30 Heat of formation + Delta-G solvation = -7.435348 kcal Electronic energy + Delta-G solvation = -21105.573594 eV Core-core repulsion = 17818.225165 eV Total energy + Delta-G solvation = -3287.348429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.62417 -41.25428 -39.45201 -37.31750 -35.56497 -33.72707 -32.38150 -31.69561 -30.31597 -29.15370 -27.42624 -24.72940 -24.20757 -23.06231 -22.18566 -22.10704 -19.52951 -18.32919 -17.97819 -17.56502 -16.86573 -16.69697 -16.49924 -16.30255 -16.15675 -15.49742 -15.11934 -14.71695 -14.60441 -14.34193 -14.17068 -13.91692 -13.64349 -13.49334 -13.20509 -12.94691 -12.84158 -12.53506 -12.22285 -12.02295 -11.95885 -11.91244 -11.59919 -11.42181 -11.13417 -10.87030 -9.94660 -9.46135 -9.09137 -8.74599 -8.49108 -6.49692 -0.47651 -0.03832 0.73941 0.86310 1.24896 1.38630 1.49079 1.53308 2.15401 2.19056 2.65580 3.24152 3.55683 3.58426 3.70141 3.93087 4.00109 4.10824 4.21429 4.34612 4.41227 4.46337 4.52114 4.54889 4.76495 4.81653 4.97450 4.98477 5.06629 5.12667 5.23096 5.33134 5.37190 5.49262 5.57981 5.64676 5.67571 5.71164 5.90241 5.93427 5.96709 6.14039 6.22930 6.51163 6.79370 6.80934 8.23184 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024596 B = 0.003648 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.114188 B = 7672.691983 C = 8726.140357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.034 3.966 3 Si 0.988 3.012 4 H -0.264 1.264 5 H -0.268 1.268 6 H -0.251 1.251 7 C -0.486 4.486 8 H 0.091 0.909 9 C 0.104 3.896 10 C -0.225 4.225 11 C 0.095 3.905 12 F -0.165 7.165 13 C -0.267 4.267 14 C -0.006 4.006 15 C -0.043 4.043 16 C -0.120 4.120 17 C -0.102 4.102 18 C -0.074 4.074 19 C -0.111 4.111 20 C -0.121 4.121 21 C -0.116 4.116 22 C -0.123 4.123 23 C -0.067 4.067 24 C -0.114 4.114 25 C -0.221 4.221 26 H 0.291 0.709 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.136 0.864 35 H 0.130 0.870 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.585 -15.507 3.171 16.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.183 4.183 3 Si 0.808 3.192 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.174 1.174 7 C -0.514 4.514 8 H 0.109 0.891 9 C 0.101 3.899 10 C -0.246 4.246 11 C 0.076 3.924 12 F -0.144 7.144 13 C -0.287 4.287 14 C -0.007 4.007 15 C -0.043 4.043 16 C -0.138 4.138 17 C -0.120 4.120 18 C -0.074 4.074 19 C -0.128 4.128 20 C -0.139 4.139 21 C -0.134 4.134 22 C -0.141 4.141 23 C -0.067 4.067 24 C -0.132 4.132 25 C -0.241 4.241 26 H 0.102 0.898 27 H 0.129 0.871 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.174 0.826 31 H 0.169 0.831 32 H 0.170 0.830 33 H 0.167 0.833 34 H 0.154 0.846 35 H 0.148 0.852 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.327 -15.356 3.164 16.559 hybrid contribution -0.493 1.300 -0.414 1.451 sum 4.834 -14.056 2.751 15.116 Atomic orbital electron populations 1.69882 1.09372 1.31079 1.34132 1.26904 0.95448 1.05033 0.90866 0.85096 0.79329 0.75377 0.79399 1.18853 1.19284 1.17431 1.19931 0.98864 0.91815 1.40792 0.89112 1.17634 0.90430 0.93551 0.88277 1.21291 1.02326 0.95817 1.05130 1.17741 0.85480 0.95483 0.93655 1.91330 1.53511 1.97597 1.71955 1.20558 1.03188 0.95183 1.09735 1.18413 0.94217 0.92252 0.95780 1.18934 0.96028 0.91746 0.97592 1.21103 0.95917 0.99370 0.97360 1.21220 1.00277 0.90662 0.99832 1.18459 0.95637 0.95121 0.98199 1.21341 1.00679 0.90850 0.99953 1.21248 0.95611 0.99369 0.97671 1.21212 0.96765 0.98245 0.97170 1.21278 1.00390 0.91671 1.00754 1.18286 0.96279 0.93800 0.98312 1.21493 1.00108 0.91100 1.00473 1.21367 1.04390 0.91469 1.06841 0.89774 0.87109 0.85641 0.85240 0.82576 0.83148 0.82971 0.83309 0.84629 0.85248 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.71 10.96 21.82 0.24 -42.47 16 2 C 0.03 1.66 5.14 85.25 0.44 2.10 16 3 Si 0.99 36.94 29.60 68.60 2.03 38.97 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 6 H -0.25 -8.94 7.11 99.48 0.71 -8.24 16 7 C -0.49 -25.27 9.05 23.46 0.21 -25.06 16 8 H 0.09 4.43 7.91 -2.91 -0.02 4.40 16 9 C 0.10 5.55 5.57 -21.33 -0.12 5.43 16 10 C -0.23 -12.33 8.67 22.80 0.20 -12.13 16 11 C 0.10 4.86 7.28 22.29 0.16 5.02 16 12 F -0.16 -8.04 17.26 44.97 0.78 -7.27 16 13 C -0.27 -12.32 9.40 22.72 0.21 -12.10 16 14 C -0.01 -0.28 5.87 -20.10 -0.12 -0.40 16 15 C -0.04 -1.62 5.87 -20.06 -0.12 -1.74 16 16 C -0.12 -3.91 9.32 22.24 0.21 -3.71 16 17 C -0.10 -2.72 9.74 22.29 0.22 -2.50 16 18 C -0.07 -1.97 5.74 -21.26 -0.12 -2.09 16 19 C -0.11 -2.18 9.76 22.33 0.22 -1.96 16 20 C -0.12 -2.04 9.95 22.05 0.22 -1.82 16 21 C -0.12 -2.11 9.95 22.04 0.22 -1.89 16 22 C -0.12 -2.87 9.77 22.35 0.22 -2.65 16 23 C -0.07 -1.95 5.74 -21.31 -0.12 -2.07 16 24 C -0.11 -3.84 9.17 22.77 0.21 -3.63 16 25 C -0.22 -10.63 9.16 22.96 0.21 -10.42 16 26 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 27 H 0.11 6.37 6.15 -2.91 -0.02 6.35 16 28 H 0.13 5.11 6.14 -2.91 -0.02 5.09 16 29 H 0.13 4.10 6.13 -2.91 -0.02 4.08 16 30 H 0.16 3.02 8.06 -2.91 -0.02 2.99 16 31 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.13 4.17 6.13 -2.91 -0.02 4.15 16 36 H 0.12 5.20 6.14 -2.91 -0.02 5.18 16 Total: -1.00 -61.82 311.45 6.51 -55.31 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 1.12 Total: 27.09 kcal Atomic # 6 Polarization: -73.97 SS G_CDS: 2.34 Total: -71.63 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.24 Total: -42.47 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 0.78 Total: -7.27 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 2.03 Total: 38.97 kcal Total: -61.82 6.51 -55.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240910621.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.872 kcal (2) G-P(sol) polarization free energy of solvation -61.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds