Wall clock time and date at job start Tue Mar 31 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86807 * 120.00224 * 2 1 4 4 H 1.48500 * 109.46685 * 275.40535 * 3 2 1 5 5 H 1.48501 * 109.46966 * 35.40715 * 3 2 1 6 6 H 1.48492 * 109.47070 * 155.40804 * 3 2 1 7 7 C 1.39928 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00195 * 341.71705 * 7 2 1 9 9 C 1.41437 * 119.99879 * 161.71319 * 7 2 1 10 10 C 1.40803 * 120.17823 * 150.43588 * 9 7 2 11 11 C 1.37700 * 120.01376 * 180.25703 * 10 9 7 12 12 C 1.38399 * 120.39543 * 359.49165 * 11 10 9 13 13 C 1.39820 * 120.35929 * 0.27841 * 12 11 10 14 14 C 1.48150 * 120.00864 * 179.97438 * 13 12 11 15 15 C 1.38387 * 120.32263 * 129.72612 * 14 13 12 16 16 C 1.38959 * 120.72316 * 179.74584 * 15 14 13 17 17 C 1.36458 * 121.11125 * 0.53950 * 16 15 14 18 18 F 1.35094 * 119.99639 * 179.72349 * 17 16 15 19 19 C 1.40748 * 120.00597 * 359.73905 * 17 16 15 20 20 C 1.40535 * 121.17021 * 180.02562 * 19 17 16 21 21 C 1.36131 * 119.65844 * 179.97438 * 20 19 17 22 22 C 1.39321 * 120.95311 * 0.02562 * 21 20 19 23 23 C 1.36205 * 120.94269 * 359.97438 * 22 21 20 24 24 C 1.40247 * 119.67934 * 0.04625 * 23 22 21 25 25 C 1.38903 * 119.97730 * 359.97438 * 13 12 11 26 26 H 0.97005 * 119.99846 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.99601 * 0.02884 * 10 9 7 28 28 H 1.08001 * 119.80263 * 179.77792 * 11 10 9 29 29 H 1.08000 * 119.81955 * 180.25656 * 12 11 10 30 30 H 1.08006 * 119.63229 * 0.02562 * 15 14 13 31 31 H 1.07998 * 119.44319 * 180.23925 * 16 15 14 32 32 H 1.07993 * 120.17093 * 0.02562 * 20 19 17 33 33 H 1.07997 * 119.52375 * 179.97438 * 21 20 19 34 34 H 1.08003 * 119.52722 * 179.97438 * 22 21 20 35 35 H 1.08002 * 120.16356 * 180.02562 * 23 22 21 36 36 H 1.08002 * 120.19112 * 180.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.3756 2.1123 -1.3939 5 1 1.5016 2.6170 0.8112 6 1 3.5923 1.4099 0.5826 7 6 2.0079 -1.2118 0.0005 8 1 1.5088 -2.1234 0.2944 9 6 3.3687 -1.2429 -0.3838 10 6 4.2360 -2.2093 0.1606 11 6 5.5615 -2.2331 -0.2119 12 6 6.0477 -1.3176 -1.1289 13 6 5.1996 -0.3541 -1.6833 14 6 5.7284 0.6225 -2.6638 15 6 5.0790 0.8238 -3.8691 16 6 5.5647 1.7415 -4.7926 17 6 6.6978 2.4601 -4.5436 18 9 7.1531 3.3423 -5.4597 19 6 7.3923 2.2819 -3.3324 20 6 8.5612 3.0093 -3.0503 21 6 9.2082 2.8129 -1.8688 22 6 8.7288 1.8993 -0.9325 23 6 7.5990 1.1776 -1.1731 24 6 6.9065 1.3534 -2.3799 25 6 3.8610 -0.3129 -1.3143 26 1 -0.4850 0.8401 -0.0004 27 1 3.8626 -2.9296 0.8733 28 1 6.2246 -2.9736 0.2105 29 1 7.0880 -1.3474 -1.4176 30 1 4.1823 0.2648 -4.0925 31 1 5.0394 1.8850 -5.7252 32 1 8.9437 3.7210 -3.7669 33 1 10.1065 3.3727 -1.6545 34 1 9.2606 1.7615 -0.0027 35 1 7.2383 0.4731 -0.4383 36 1 3.2028 0.4296 -1.7407 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241902479.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:47 Heat of formation + Delta-G solvation = 8.253423 kcal Electronic energy + Delta-G solvation = -21947.724933 eV Core-core repulsion = 18661.056820 eV Total energy + Delta-G solvation = -3286.668113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.83338 -40.23236 -37.85839 -36.21022 -33.85859 -32.66922 -30.57006 -30.30341 -30.12862 -27.73391 -25.25919 -23.58932 -23.11124 -22.22457 -21.12699 -19.86038 -17.82324 -17.72811 -17.07005 -16.56006 -15.98884 -15.56400 -15.02744 -14.70402 -14.60182 -14.00508 -13.96982 -13.79757 -13.24580 -13.11025 -12.98632 -12.67607 -12.42515 -12.19470 -11.97126 -11.57951 -11.21292 -11.09113 -10.90147 -10.81902 -10.61160 -10.38961 -9.92190 -9.76356 -9.60628 -9.21011 -8.63898 -8.07189 -7.73306 -7.25295 -7.01473 -4.56894 0.50454 1.02836 1.91816 2.48275 2.57027 3.03793 3.10202 3.18252 3.27301 3.92334 4.12334 4.27174 4.39627 4.69247 4.84539 4.92185 5.08362 5.17787 5.31446 5.38573 5.45644 5.55127 5.89474 5.92015 5.93765 6.11749 6.13358 6.24307 6.29265 6.41205 6.45676 6.53236 6.60557 6.69380 6.85300 6.89147 7.05795 7.09589 7.24870 7.49561 7.61793 7.74994 7.99899 8.26617 8.54494 8.71976 10.00690 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016848 B = 0.005626 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.501221 B = 4975.420326 C = 5585.354299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.087 3.913 3 Si 0.902 3.098 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.243 1.243 7 C -0.448 4.448 8 H 0.092 0.908 9 C 0.092 3.908 10 C -0.201 4.201 11 C -0.085 4.085 12 C -0.226 4.226 13 C -0.024 4.024 14 C -0.009 4.009 15 C -0.100 4.100 16 C -0.137 4.137 17 C 0.083 3.917 18 F -0.141 7.141 19 C -0.075 4.075 20 C -0.112 4.112 21 C -0.112 4.112 22 C -0.124 4.124 23 C -0.092 4.092 24 C -0.025 4.025 25 C -0.213 4.213 26 H 0.286 0.714 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.137 0.863 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.146 0.854 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.912 5.039 -4.626 14.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.133 4.133 3 Si 0.729 3.271 4 H -0.194 1.194 5 H -0.216 1.216 6 H -0.166 1.166 7 C -0.476 4.476 8 H 0.110 0.890 9 C 0.089 3.911 10 C -0.220 4.220 11 C -0.104 4.104 12 C -0.245 4.245 13 C -0.024 4.024 14 C -0.010 4.010 15 C -0.118 4.118 16 C -0.155 4.155 17 C 0.064 3.936 18 F -0.120 7.120 19 C -0.076 4.076 20 C -0.130 4.130 21 C -0.131 4.131 22 C -0.142 4.142 23 C -0.109 4.109 24 C -0.026 4.026 25 C -0.232 4.232 26 H 0.096 0.904 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.155 0.845 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.164 0.836 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.636 5.166 -4.641 14.418 hybrid contribution 0.197 0.974 -0.264 1.029 sum 12.833 6.140 -4.905 15.048 Atomic orbital electron populations 1.69691 1.08054 1.30309 1.34906 1.26116 0.94678 1.01586 0.90889 0.86435 0.81471 0.80055 0.79179 1.19412 1.21631 1.16630 1.19490 0.93114 0.96161 1.38844 0.88997 1.17655 0.93092 0.90784 0.89607 1.21120 0.93009 1.03708 1.04196 1.20583 0.95415 0.97368 0.96998 1.20445 0.97878 1.00926 1.05293 1.18250 0.93772 0.94551 0.95851 1.19258 0.92742 0.94878 0.94083 1.21075 1.00321 0.97867 0.92585 1.20735 0.95895 0.97599 1.01313 1.17302 0.95831 0.92877 0.87558 1.91443 1.88830 1.66686 1.65011 1.17944 0.96878 0.99166 0.93606 1.20864 0.94671 0.99572 0.97924 1.20810 0.99878 0.98462 0.93903 1.20925 0.97005 0.96743 0.99541 1.21470 0.94448 0.98770 0.96241 1.17889 0.94928 0.95576 0.94164 1.21133 0.93823 1.04557 1.03717 0.90375 0.88034 0.88429 0.88378 0.84485 0.84791 0.85566 0.86001 0.85817 0.83629 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.09 13.93 55.55 0.77 -20.31 16 2 C 0.09 2.22 5.40 -17.35 -0.09 2.13 16 3 Si 0.90 20.65 24.52 -169.99 -4.17 16.48 16 4 H -0.27 -6.03 6.71 56.52 0.38 -5.65 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.24 -5.69 6.86 56.52 0.39 -5.30 16 7 C -0.45 -11.73 9.57 -37.73 -0.36 -12.09 16 8 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 9 C 0.09 2.23 5.10 -106.87 -0.55 1.68 16 10 C -0.20 -4.42 9.79 -38.81 -0.38 -4.80 16 11 C -0.09 -1.67 10.01 -39.72 -0.40 -2.07 16 12 C -0.23 -4.39 7.61 -38.93 -0.30 -4.69 16 13 C -0.02 -0.50 5.04 -104.99 -0.53 -1.03 16 14 C -0.01 -0.18 5.49 -104.52 -0.57 -0.75 16 15 C -0.10 -1.70 9.46 -39.26 -0.37 -2.08 16 16 C -0.14 -2.05 9.90 -39.96 -0.40 -2.45 16 17 C 0.08 1.29 7.24 -39.28 -0.28 1.01 16 18 F -0.14 -2.07 16.62 2.25 0.04 -2.03 16 19 C -0.08 -1.20 5.74 -106.80 -0.61 -1.82 16 20 C -0.11 -1.52 9.60 -39.47 -0.38 -1.90 16 21 C -0.11 -1.37 9.95 -39.94 -0.40 -1.76 16 22 C -0.12 -1.62 9.95 -39.91 -0.40 -2.02 16 23 C -0.09 -1.45 8.57 -39.56 -0.34 -1.79 16 24 C -0.03 -0.44 5.73 -106.61 -0.61 -1.05 16 25 C -0.21 -4.93 6.62 -38.50 -0.25 -5.19 16 26 H 0.29 6.80 8.30 -40.82 -0.34 6.46 16 27 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 28 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 29 H 0.10 1.72 7.24 -52.49 -0.38 1.34 16 30 H 0.14 2.22 8.02 -52.48 -0.42 1.80 16 31 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 32 H 0.13 1.47 7.71 -52.49 -0.40 1.06 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 35 H 0.15 2.38 5.58 -52.49 -0.29 2.09 16 36 H 0.10 2.43 4.72 -52.49 -0.25 2.19 16 LS Contribution 306.45 15.07 4.62 4.62 Total: -1.00 -26.77 306.45 -9.41 -36.18 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -3.45 Total: 5.72 kcal Atomic # 6 Polarization: -33.45 SS G_CDS: -7.22 Total: -40.67 kcal Atomic # 7 Polarization: -21.09 SS G_CDS: 0.77 Total: -20.31 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.17 Total: 16.48 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -26.77 -9.41 -36.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241902479.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.436 kcal (2) G-P(sol) polarization free energy of solvation -26.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds