Wall clock time and date at job start Tue Mar 31 2020 06:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86807 * 120.00224 * 2 1 4 4 H 1.48500 * 109.46685 * 275.40535 * 3 2 1 5 5 H 1.48501 * 109.46966 * 35.40715 * 3 2 1 6 6 H 1.48492 * 109.47070 * 155.40804 * 3 2 1 7 7 C 1.39928 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00195 * 341.71705 * 7 2 1 9 9 C 1.41437 * 119.99879 * 161.71319 * 7 2 1 10 10 C 1.40803 * 120.17823 * 150.43588 * 9 7 2 11 11 C 1.37700 * 120.01376 * 180.25703 * 10 9 7 12 12 C 1.38399 * 120.39543 * 359.49165 * 11 10 9 13 13 C 1.39820 * 120.35929 * 0.27841 * 12 11 10 14 14 C 1.48150 * 120.00864 * 179.97438 * 13 12 11 15 15 C 1.38387 * 120.32263 * 129.72612 * 14 13 12 16 16 C 1.38959 * 120.72316 * 179.74584 * 15 14 13 17 17 C 1.36458 * 121.11125 * 0.53950 * 16 15 14 18 18 F 1.35094 * 119.99639 * 179.72349 * 17 16 15 19 19 C 1.40748 * 120.00597 * 359.73905 * 17 16 15 20 20 C 1.40535 * 121.17021 * 180.02562 * 19 17 16 21 21 C 1.36131 * 119.65844 * 179.97438 * 20 19 17 22 22 C 1.39321 * 120.95311 * 0.02562 * 21 20 19 23 23 C 1.36205 * 120.94269 * 359.97438 * 22 21 20 24 24 C 1.40247 * 119.67934 * 0.04625 * 23 22 21 25 25 C 1.38903 * 119.97730 * 359.97438 * 13 12 11 26 26 H 0.97005 * 119.99846 * 0.02562 * 1 2 3 27 27 H 1.07998 * 119.99601 * 0.02884 * 10 9 7 28 28 H 1.08001 * 119.80263 * 179.77792 * 11 10 9 29 29 H 1.08000 * 119.81955 * 180.25656 * 12 11 10 30 30 H 1.08006 * 119.63229 * 0.02562 * 15 14 13 31 31 H 1.07998 * 119.44319 * 180.23925 * 16 15 14 32 32 H 1.07993 * 120.17093 * 0.02562 * 20 19 17 33 33 H 1.07997 * 119.52375 * 179.97438 * 21 20 19 34 34 H 1.08003 * 119.52722 * 179.97438 * 22 21 20 35 35 H 1.08002 * 120.16356 * 180.02562 * 23 22 21 36 36 H 1.08002 * 120.19112 * 180.02562 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 2.3756 2.1123 -1.3939 5 1 1.5016 2.6170 0.8112 6 1 3.5923 1.4099 0.5826 7 6 2.0079 -1.2118 0.0005 8 1 1.5088 -2.1234 0.2944 9 6 3.3687 -1.2429 -0.3838 10 6 4.2360 -2.2093 0.1606 11 6 5.5615 -2.2331 -0.2119 12 6 6.0477 -1.3176 -1.1289 13 6 5.1996 -0.3541 -1.6833 14 6 5.7284 0.6225 -2.6638 15 6 5.0790 0.8238 -3.8691 16 6 5.5647 1.7415 -4.7926 17 6 6.6978 2.4601 -4.5436 18 9 7.1531 3.3423 -5.4597 19 6 7.3923 2.2819 -3.3324 20 6 8.5612 3.0093 -3.0503 21 6 9.2082 2.8129 -1.8688 22 6 8.7288 1.8993 -0.9325 23 6 7.5990 1.1776 -1.1731 24 6 6.9065 1.3534 -2.3799 25 6 3.8610 -0.3129 -1.3143 26 1 -0.4850 0.8401 -0.0004 27 1 3.8626 -2.9296 0.8733 28 1 6.2246 -2.9736 0.2105 29 1 7.0880 -1.3474 -1.4176 30 1 4.1823 0.2648 -4.0925 31 1 5.0394 1.8850 -5.7252 32 1 8.9437 3.7210 -3.7669 33 1 10.1065 3.3727 -1.6545 34 1 9.2606 1.7615 -0.0027 35 1 7.2383 0.4731 -0.4383 36 1 3.2028 0.4296 -1.7407 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241902479.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:47 Heat of formation + Delta-G solvation = -2.744191 kcal Electronic energy + Delta-G solvation = -21948.201825 eV Core-core repulsion = 18661.056820 eV Total energy + Delta-G solvation = -3287.145005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.096 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.01193 -41.44504 -39.46714 -37.39908 -35.64748 -34.07434 -32.23550 -31.57671 -31.39763 -29.11526 -27.08480 -24.80913 -24.30824 -23.59462 -22.75586 -21.34481 -19.41768 -18.96240 -18.39180 -17.87522 -17.51022 -16.74123 -16.53309 -16.28779 -15.81770 -15.66154 -15.18142 -14.98382 -14.77146 -14.63771 -14.32036 -14.04529 -13.87610 -13.55320 -13.47858 -13.19182 -12.72289 -12.64246 -12.34470 -12.17261 -12.05119 -11.93175 -11.63914 -11.47460 -11.04334 -10.84189 -9.76816 -9.57530 -9.49585 -8.93034 -8.59884 -6.52318 -0.69844 -0.11332 0.56607 0.81543 1.01557 1.22409 1.33156 1.41963 1.91764 2.06183 2.55452 2.97544 3.07557 3.45947 3.52808 3.73518 3.73903 4.00977 4.04145 4.29287 4.31470 4.37914 4.49843 4.51802 4.68713 4.71988 4.79189 4.91685 4.93452 5.01794 5.15178 5.16551 5.26402 5.29212 5.47913 5.51733 5.58731 5.74523 5.79746 5.87470 5.96492 5.97715 6.22781 6.36950 6.70484 6.81702 8.15776 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016848 B = 0.005626 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.501221 B = 4975.420326 C = 5585.354299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.056 3.944 3 Si 0.951 3.049 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.253 1.253 7 C -0.484 4.484 8 H 0.061 0.939 9 C 0.072 3.928 10 C -0.213 4.213 11 C -0.080 4.080 12 C -0.205 4.205 13 C -0.022 4.022 14 C -0.043 4.043 15 C -0.104 4.104 16 C -0.142 4.142 17 C 0.090 3.910 18 F -0.134 7.134 19 C -0.093 4.093 20 C -0.116 4.116 21 C -0.104 4.104 22 C -0.107 4.107 23 C -0.122 4.122 24 C -0.037 4.037 25 C -0.227 4.227 26 H 0.293 0.707 27 H 0.106 0.894 28 H 0.138 0.862 29 H 0.126 0.874 30 H 0.134 0.866 31 H 0.160 0.840 32 H 0.147 0.853 33 H 0.162 0.838 34 H 0.155 0.845 35 H 0.135 0.865 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.109 6.577 -5.232 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.159 4.159 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.177 1.177 7 C -0.514 4.514 8 H 0.079 0.921 9 C 0.070 3.930 10 C -0.232 4.232 11 C -0.097 4.097 12 C -0.224 4.224 13 C -0.022 4.022 14 C -0.043 4.043 15 C -0.122 4.122 16 C -0.161 4.161 17 C 0.070 3.930 18 F -0.113 7.113 19 C -0.094 4.094 20 C -0.134 4.134 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.140 4.140 24 C -0.037 4.037 25 C -0.247 4.247 26 H 0.103 0.897 27 H 0.124 0.876 28 H 0.155 0.845 29 H 0.144 0.856 30 H 0.152 0.848 31 H 0.177 0.823 32 H 0.164 0.836 33 H 0.179 0.821 34 H 0.172 0.828 35 H 0.153 0.847 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 16.838 6.699 -5.250 18.867 hybrid contribution -0.746 0.471 -0.159 0.897 sum 16.092 7.171 -5.409 18.429 Atomic orbital electron populations 1.69718 1.08909 1.31223 1.37603 1.26615 0.95154 1.03527 0.90588 0.85691 0.79915 0.77630 0.79210 1.19132 1.20328 1.17718 1.19464 0.94543 0.95579 1.41801 0.92091 1.17802 0.92756 0.92157 0.90294 1.21335 0.94089 1.03304 1.04482 1.20984 0.94730 0.97765 0.96262 1.20875 0.98942 0.99142 1.03404 1.18493 0.92871 0.95062 0.95792 1.19235 0.94484 0.96152 0.94472 1.21164 1.00091 0.98174 0.92728 1.20896 0.96147 0.97099 1.01925 1.17407 0.95624 0.92397 0.87531 1.91460 1.88702 1.66368 1.64750 1.18176 0.98053 0.99586 0.93547 1.21194 0.93754 0.99380 0.99049 1.21260 1.00570 0.97627 0.92698 1.21334 0.95493 0.95022 1.00613 1.21459 0.96110 1.00502 0.95882 1.17990 0.94616 0.95934 0.95205 1.21130 0.95107 1.04444 1.03979 0.89692 0.87565 0.84460 0.85639 0.84789 0.82281 0.83551 0.82055 0.82761 0.84747 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.82 13.93 21.82 0.30 -46.52 16 2 C 0.06 3.02 5.40 85.25 0.46 3.48 16 3 Si 0.95 44.07 24.52 68.60 1.68 45.75 16 4 H -0.27 -11.99 6.71 99.48 0.67 -11.33 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.25 -11.98 6.86 99.48 0.68 -11.29 16 7 C -0.48 -27.02 9.57 23.47 0.22 -26.79 16 8 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 9 C 0.07 3.64 5.10 -21.32 -0.11 3.53 16 10 C -0.21 -9.40 9.79 22.77 0.22 -9.18 16 11 C -0.08 -2.94 10.01 22.18 0.22 -2.72 16 12 C -0.20 -7.52 7.61 22.69 0.17 -7.35 16 13 C -0.02 -0.90 5.04 -20.10 -0.10 -1.01 16 14 C -0.04 -1.58 5.49 -19.80 -0.11 -1.69 16 15 C -0.10 -3.46 9.46 22.48 0.21 -3.25 16 16 C -0.14 -4.05 9.90 22.03 0.22 -3.83 16 17 C 0.09 2.57 7.24 22.47 0.16 2.73 16 18 F -0.13 -3.54 16.62 44.97 0.75 -2.79 16 19 C -0.09 -2.72 5.74 -21.27 -0.12 -2.84 16 20 C -0.12 -2.67 9.60 22.34 0.21 -2.45 16 21 C -0.10 -1.99 9.95 22.04 0.22 -1.77 16 22 C -0.11 -2.32 9.95 22.06 0.22 -2.10 16 23 C -0.12 -3.53 8.57 22.28 0.19 -3.34 16 24 C -0.04 -1.22 5.73 -21.15 -0.12 -1.34 16 25 C -0.23 -10.75 6.62 22.97 0.15 -10.59 16 26 H 0.29 14.60 8.30 -92.70 -0.77 13.83 16 27 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 28 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 29 H 0.13 3.96 7.24 -2.91 -0.02 3.94 16 30 H 0.13 4.42 8.02 -2.91 -0.02 4.39 16 31 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 32 H 0.15 2.73 7.71 -2.91 -0.02 2.71 16 33 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 34 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.13 4.10 5.58 -2.91 -0.02 4.08 16 36 H 0.09 4.50 4.72 -2.91 -0.01 4.49 16 Total: -1.00 -60.91 306.45 6.11 -54.80 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 1.05 Total: 19.27 kcal Atomic # 6 Polarization: -72.84 SS G_CDS: 2.33 Total: -70.51 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: 0.30 Total: -46.52 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.75 Total: -2.79 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.68 Total: 45.75 kcal Total: -60.91 6.11 -54.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241902479.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.052 kcal (2) G-P(sol) polarization free energy of solvation -60.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds