Wall clock time and date at job start Tue Mar 31 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86800 * 119.99871 * 2 1 4 4 H 1.48502 * 109.46777 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47101 * 299.99499 * 3 2 1 6 6 H 1.48496 * 109.47113 * 59.99930 * 3 2 1 7 7 C 1.39935 * 119.99579 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99172 * 197.37140 * 7 2 1 9 9 C 1.41436 * 120.00266 * 17.37403 * 7 2 1 10 10 C 1.40813 * 120.60256 * 203.39159 * 9 7 2 11 11 N 1.31491 * 120.67156 * 179.97438 * 10 9 7 12 12 C 1.31942 * 122.12068 * 0.02562 * 11 10 9 13 13 C 1.39690 * 121.14634 * 359.97438 * 12 11 10 14 14 C 1.48378 * 120.40829 * 180.02562 * 13 12 11 15 15 C 1.39375 * 120.05772 * 359.97438 * 14 13 12 16 16 C 1.37889 * 119.94788 * 179.97438 * 15 14 13 17 17 C 1.38915 * 120.05282 * 359.97438 * 16 15 14 18 18 N 1.40166 * 119.94666 * 180.02562 * 17 16 15 19 19 C 1.36121 * 125.94303 * 179.97438 * 18 17 16 20 20 C 1.35376 * 106.04627 * 179.97438 * 19 18 17 21 21 N 1.33770 * 106.54058 * 0.02562 * 20 19 18 22 22 N 1.28609 * 109.06305 * 359.97438 * 21 20 19 23 23 C 1.38920 * 120.11017 * 0.29813 * 17 16 15 24 24 C 1.37885 * 120.05618 * 359.45216 * 23 17 16 25 25 C 1.39193 * 119.17981 * 0.27737 * 13 12 11 26 26 H 0.96997 * 119.99873 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.66573 * 0.02562 * 10 9 7 28 28 H 1.07997 * 119.42585 * 179.97438 * 12 11 10 29 29 H 1.08007 * 120.02780 * 0.02562 * 15 14 13 30 30 H 1.07996 * 119.97449 * 180.02562 * 16 15 14 31 31 H 1.07998 * 126.98303 * 359.70471 * 19 18 17 32 32 H 1.08001 * 126.72952 * 180.02562 * 20 19 18 33 33 H 1.07999 * 119.97199 * 179.72487 * 23 17 16 34 34 H 1.08004 * 120.02917 * 180.29779 * 24 23 17 35 35 H 1.07999 * 120.95339 * 179.73020 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0510 -1.2331 0.2798 9 6 1.3491 -2.4090 -0.3647 10 6 1.8321 -3.6562 0.0758 11 7 1.2204 -4.7699 -0.2625 12 6 0.1403 -4.7747 -1.0203 13 6 -0.4091 -3.5845 -1.5028 14 6 -1.6246 -3.6090 -2.3534 15 6 -2.2260 -4.8240 -2.6768 16 6 -3.3558 -4.8441 -3.4671 17 6 -3.8950 -3.6545 -3.9403 18 7 -5.0438 -3.6775 -4.7430 19 6 -5.6722 -2.5911 -5.2699 20 6 -6.7263 -3.0716 -5.9704 21 7 -6.6943 -4.4027 -5.8413 22 7 -5.6880 -4.7298 -5.1103 23 6 -3.2942 -2.4426 -3.6241 24 6 -2.1673 -2.4168 -2.8300 25 6 0.2008 -2.3757 -1.1801 26 1 -0.4850 0.8400 -0.0004 27 1 2.7135 -3.6984 0.6986 28 1 -0.3271 -5.7153 -1.2720 29 1 -1.8079 -5.7491 -2.3081 30 1 -3.8224 -5.7853 -3.7176 31 1 -5.3901 -1.5555 -5.1496 32 1 -7.4510 -2.4937 -6.5247 33 1 -3.7127 -1.5194 -3.9969 34 1 -1.7033 -1.4740 -2.5804 35 1 -0.1972 -1.4389 -1.5412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242416145.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:42 Heat of formation + Delta-G solvation = 152.877332 kcal Electronic energy + Delta-G solvation = -21194.019975 eV Core-core repulsion = 17965.835939 eV Total energy + Delta-G solvation = -3228.184037 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.45935 -39.55028 -38.15504 -34.83040 -34.25590 -31.73870 -31.71066 -30.81412 -30.37623 -28.20630 -25.89280 -24.31641 -23.79202 -22.26166 -21.87687 -20.86291 -20.37929 -18.72267 -17.59034 -16.50866 -16.08660 -15.80941 -15.43074 -15.24369 -14.99944 -14.50307 -13.99311 -13.71688 -13.42355 -13.26485 -13.21903 -12.48773 -12.26317 -11.95163 -11.73309 -11.59854 -11.43609 -11.36374 -11.11496 -11.04709 -10.84227 -10.63993 -10.04733 -9.57806 -9.56668 -9.18311 -9.02370 -8.31532 -8.07262 -7.43852 -7.04211 -4.68915 0.52981 1.38496 1.79016 2.24465 2.42798 2.52877 2.78939 2.91569 2.96152 3.02574 3.70745 3.89376 4.28778 4.43351 4.51774 4.80484 4.92533 5.02576 5.11292 5.18255 5.41332 5.45603 5.50085 5.69153 5.83077 5.95448 5.98567 6.20672 6.31921 6.33533 6.44483 6.53127 6.63095 6.85167 6.88210 6.95859 7.04303 7.43555 7.62806 7.69057 8.20351 8.36425 8.45876 8.48947 9.41112 9.85778 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020211 B = 0.003744 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.060349 B = 7477.039279 C = 8785.108951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.446 4.446 8 H 0.086 0.914 9 C 0.059 3.941 10 C -0.010 4.010 11 N -0.468 5.468 12 C -0.020 4.020 13 C -0.103 4.103 14 C 0.013 3.987 15 C -0.106 4.106 16 C -0.093 4.093 17 C 0.085 3.915 18 N -0.227 5.227 19 C -0.052 4.052 20 C -0.050 4.050 21 N -0.273 5.273 22 N -0.083 5.083 23 C -0.109 4.109 24 C -0.097 4.097 25 C -0.111 4.111 26 H 0.285 0.715 27 H 0.129 0.871 28 H 0.124 0.876 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.192 0.808 32 H 0.192 0.808 33 H 0.130 0.870 34 H 0.144 0.856 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.089 1.821 -7.184 10.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.475 4.475 8 H 0.104 0.896 9 C 0.055 3.945 10 C -0.172 4.172 11 N -0.175 5.175 12 C -0.178 4.178 13 C -0.105 4.105 14 C 0.011 3.989 15 C -0.124 4.124 16 C -0.113 4.113 17 C -0.005 4.005 18 N -0.015 5.015 19 C -0.200 4.200 20 C -0.207 4.207 21 N -0.139 5.139 22 N -0.062 5.062 23 C -0.129 4.129 24 C -0.116 4.116 25 C -0.137 4.137 26 H 0.096 0.904 27 H 0.146 0.854 28 H 0.142 0.858 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.209 0.791 32 H 0.209 0.791 33 H 0.148 0.852 34 H 0.162 0.838 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.103 -0.363 -6.841 9.868 hybrid contribution -0.025 2.992 -0.260 3.003 sum -7.128 2.629 -7.101 10.399 Atomic orbital electron populations 1.69776 1.07720 1.29757 1.34205 1.25988 0.94829 1.01753 0.91860 0.86170 0.81081 0.80293 0.78813 1.18118 1.19495 1.19724 1.19626 0.98249 0.90684 1.38963 0.89591 1.18486 0.92153 0.93841 0.90051 1.22615 1.02276 0.87987 1.04284 1.66969 1.07783 1.31929 1.10844 1.21811 0.96735 0.95333 1.03929 1.19403 0.95047 0.95816 1.00275 1.19212 0.93697 0.92452 0.93494 1.21213 0.94784 0.98622 0.97787 1.20817 0.96303 0.96593 0.97602 1.17633 0.87586 0.96201 0.99088 1.44753 1.19142 1.05493 1.32067 1.23840 0.97648 0.95412 1.03142 1.23601 1.00578 0.91906 1.04607 1.75089 1.12409 1.13305 1.13054 1.78337 1.03296 1.11393 1.13175 1.20745 0.96902 0.95298 1.00000 1.21267 0.94695 0.99398 0.96202 1.21863 0.97618 0.95991 0.98199 0.90440 0.85355 0.85846 0.84254 0.84373 0.79092 0.79067 0.85181 0.83806 0.84814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -17.95 10.92 55.55 0.61 -17.34 16 2 C 0.07 1.66 5.18 -17.34 -0.09 1.57 16 3 Si 0.91 16.66 29.59 -169.99 -5.03 11.63 16 4 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 5 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 6 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 7 C -0.45 -10.57 9.08 -37.73 -0.34 -10.91 16 8 H 0.09 1.95 7.90 -52.48 -0.41 1.53 16 9 C 0.06 1.43 5.59 -106.71 -0.60 0.83 16 10 C -0.01 -0.25 10.96 -16.72 -0.18 -0.43 16 11 N -0.47 -10.84 10.32 -12.28 -0.13 -10.97 16 12 C -0.02 -0.43 10.60 -16.96 -0.18 -0.61 16 13 C -0.10 -2.15 5.88 -104.83 -0.62 -2.77 16 14 C 0.01 0.22 5.88 -104.87 -0.62 -0.39 16 15 C -0.11 -1.60 9.43 -39.29 -0.37 -1.97 16 16 C -0.09 -1.33 9.60 -39.46 -0.38 -1.71 16 17 C 0.09 1.21 6.68 -83.54 -0.56 0.65 16 18 N -0.23 -3.17 3.55 -10.44 -0.04 -3.21 16 19 C -0.05 -0.56 10.91 -16.67 -0.18 -0.75 16 20 C -0.05 -0.56 12.05 -17.73 -0.21 -0.77 16 21 N -0.27 -4.04 12.39 30.24 0.37 -3.67 16 22 N -0.08 -1.31 12.40 60.35 0.75 -0.56 16 23 C -0.11 -1.44 9.44 -39.46 -0.37 -1.82 16 24 C -0.10 -1.52 9.43 -39.28 -0.37 -1.89 16 25 C -0.11 -2.56 8.16 -38.23 -0.31 -2.87 16 26 H 0.28 5.82 8.30 -40.82 -0.34 5.48 16 27 H 0.13 2.78 8.06 -52.48 -0.42 2.36 16 28 H 0.12 2.26 6.19 -52.49 -0.33 1.93 16 29 H 0.14 1.90 6.21 -52.48 -0.33 1.57 16 30 H 0.14 1.83 7.68 -52.49 -0.40 1.43 16 31 H 0.19 1.34 7.09 -52.49 -0.37 0.97 16 32 H 0.19 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.13 1.32 6.75 -52.49 -0.35 0.96 16 34 H 0.14 2.30 6.25 -52.48 -0.33 1.97 16 35 H 0.13 3.03 4.44 -52.49 -0.23 2.79 16 LS Contribution 306.31 15.07 4.62 4.62 Total: -1.00 -27.74 306.31 -6.97 -34.71 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -2.74 Total: 8.62 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -5.38 Total: -23.83 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 1.57 Total: -35.75 kcal Atomic # 14 Polarization: 16.66 SS G_CDS: -5.03 Total: 11.63 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.74 -6.97 -34.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242416145.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.582 kcal (2) G-P(sol) polarization free energy of solvation -27.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds