Wall clock time and date at job start Tue Mar 31 2020 06:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86800 * 119.99871 * 2 1 4 4 H 1.48502 * 109.46777 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47101 * 299.99499 * 3 2 1 6 6 H 1.48496 * 109.47113 * 59.99930 * 3 2 1 7 7 C 1.39935 * 119.99579 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99172 * 197.37140 * 7 2 1 9 9 C 1.41436 * 120.00266 * 17.37403 * 7 2 1 10 10 C 1.40813 * 120.60256 * 203.39159 * 9 7 2 11 11 N 1.31491 * 120.67156 * 179.97438 * 10 9 7 12 12 C 1.31942 * 122.12068 * 0.02562 * 11 10 9 13 13 C 1.39690 * 121.14634 * 359.97438 * 12 11 10 14 14 C 1.48378 * 120.40829 * 180.02562 * 13 12 11 15 15 C 1.39375 * 120.05772 * 359.97438 * 14 13 12 16 16 C 1.37889 * 119.94788 * 179.97438 * 15 14 13 17 17 C 1.38915 * 120.05282 * 359.97438 * 16 15 14 18 18 N 1.40166 * 119.94666 * 180.02562 * 17 16 15 19 19 C 1.36121 * 125.94303 * 179.97438 * 18 17 16 20 20 C 1.35376 * 106.04627 * 179.97438 * 19 18 17 21 21 N 1.33770 * 106.54058 * 0.02562 * 20 19 18 22 22 N 1.28609 * 109.06305 * 359.97438 * 21 20 19 23 23 C 1.38920 * 120.11017 * 0.29813 * 17 16 15 24 24 C 1.37885 * 120.05618 * 359.45216 * 23 17 16 25 25 C 1.39193 * 119.17981 * 0.27737 * 13 12 11 26 26 H 0.96997 * 119.99873 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.66573 * 0.02562 * 10 9 7 28 28 H 1.07997 * 119.42585 * 179.97438 * 12 11 10 29 29 H 1.08007 * 120.02780 * 0.02562 * 15 14 13 30 30 H 1.07996 * 119.97449 * 180.02562 * 16 15 14 31 31 H 1.07998 * 126.98303 * 359.70471 * 19 18 17 32 32 H 1.08001 * 126.72952 * 180.02562 * 20 19 18 33 33 H 1.07999 * 119.97199 * 179.72487 * 23 17 16 34 34 H 1.08004 * 120.02917 * 180.29779 * 24 23 17 35 35 H 1.07999 * 120.95339 * 179.73020 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0510 -1.2331 0.2798 9 6 1.3491 -2.4090 -0.3647 10 6 1.8321 -3.6562 0.0758 11 7 1.2204 -4.7699 -0.2625 12 6 0.1403 -4.7747 -1.0203 13 6 -0.4091 -3.5845 -1.5028 14 6 -1.6246 -3.6090 -2.3534 15 6 -2.2260 -4.8240 -2.6768 16 6 -3.3558 -4.8441 -3.4671 17 6 -3.8950 -3.6545 -3.9403 18 7 -5.0438 -3.6775 -4.7430 19 6 -5.6722 -2.5911 -5.2699 20 6 -6.7263 -3.0716 -5.9704 21 7 -6.6943 -4.4027 -5.8413 22 7 -5.6880 -4.7298 -5.1103 23 6 -3.2942 -2.4426 -3.6241 24 6 -2.1673 -2.4168 -2.8300 25 6 0.2008 -2.3757 -1.1801 26 1 -0.4850 0.8400 -0.0004 27 1 2.7135 -3.6984 0.6986 28 1 -0.3271 -5.7153 -1.2720 29 1 -1.8079 -5.7491 -2.3081 30 1 -3.8224 -5.7853 -3.7176 31 1 -5.3901 -1.5555 -5.1496 32 1 -7.4510 -2.4937 -6.5247 33 1 -3.7127 -1.5194 -3.9969 34 1 -1.7033 -1.4740 -2.5804 35 1 -0.1972 -1.4389 -1.5412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242416145.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:42 Heat of formation + Delta-G solvation = 138.326444 kcal Electronic energy + Delta-G solvation = -21194.650949 eV Core-core repulsion = 17965.835939 eV Total energy + Delta-G solvation = -3228.815011 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.102 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.43629 -40.89670 -39.66281 -36.10408 -35.84582 -33.13216 -32.79360 -32.24760 -31.66374 -29.54745 -27.59776 -25.56313 -24.94857 -23.63582 -23.17365 -22.16191 -21.70773 -19.76694 -19.23323 -17.68319 -17.51629 -17.21928 -16.89451 -16.49067 -16.11994 -15.70007 -15.25691 -14.98970 -14.66745 -14.60269 -14.58718 -13.96342 -13.75905 -13.36746 -13.13795 -13.08689 -12.87780 -12.74217 -12.29989 -12.21385 -12.11143 -11.97567 -11.66482 -11.21770 -10.59339 -10.46703 -10.15611 -10.05128 -9.79031 -8.92880 -8.69092 -6.46867 -0.64731 0.24173 0.55734 0.93927 1.25010 1.29437 1.41971 1.51612 1.53235 1.56376 2.19095 2.56404 2.82890 3.37805 3.57368 3.70929 3.71640 3.76020 4.00166 4.11089 4.18745 4.26391 4.29579 4.40883 4.59822 4.64187 4.74263 4.86944 4.99011 5.03365 5.12716 5.18809 5.28917 5.29733 5.45867 5.48826 5.79909 5.85032 5.89478 6.00043 6.45846 6.71837 6.74992 7.38192 7.66088 8.22047 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020211 B = 0.003744 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.060349 B = 7477.039279 C = 8785.108951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.041 3.959 3 Si 0.983 3.017 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.267 1.267 7 C -0.477 4.477 8 H 0.084 0.916 9 C 0.035 3.965 10 C -0.038 4.038 11 N -0.481 5.481 12 C -0.032 4.032 13 C -0.095 4.095 14 C -0.019 4.019 15 C -0.097 4.097 16 C -0.098 4.098 17 C 0.093 3.907 18 N -0.240 5.240 19 C -0.042 4.042 20 C -0.050 4.050 21 N -0.300 5.300 22 N -0.122 5.122 23 C -0.096 4.096 24 C -0.099 4.099 25 C -0.133 4.133 26 H 0.295 0.705 27 H 0.134 0.866 28 H 0.152 0.848 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.234 0.766 32 H 0.231 0.769 33 H 0.169 0.831 34 H 0.137 0.863 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.793 3.546 -8.652 12.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.176 4.176 3 Si 0.804 3.196 4 H -0.183 1.183 5 H -0.185 1.185 6 H -0.192 1.192 7 C -0.507 4.507 8 H 0.102 0.898 9 C 0.031 3.969 10 C -0.198 4.198 11 N -0.188 5.188 12 C -0.190 4.190 13 C -0.097 4.097 14 C -0.020 4.020 15 C -0.116 4.116 16 C -0.118 4.118 17 C 0.003 3.997 18 N -0.027 5.027 19 C -0.190 4.190 20 C -0.206 4.206 21 N -0.165 5.165 22 N -0.100 5.100 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.158 4.158 26 H 0.106 0.894 27 H 0.151 0.849 28 H 0.169 0.831 29 H 0.168 0.832 30 H 0.164 0.836 31 H 0.250 0.750 32 H 0.247 0.753 33 H 0.186 0.814 34 H 0.155 0.845 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.815 1.332 -8.309 12.186 hybrid contribution 0.279 2.423 0.068 2.440 sum -8.535 3.755 -8.240 12.444 Atomic orbital electron populations 1.69799 1.08859 1.31188 1.33926 1.26744 0.95556 1.04413 0.90894 0.85120 0.79433 0.75940 0.79103 1.18314 1.18476 1.19184 1.19859 0.98509 0.91698 1.40585 0.89751 1.18809 0.93041 0.94369 0.90671 1.22737 1.03211 0.88248 1.05637 1.66967 1.08570 1.31879 1.11428 1.22338 0.96396 0.96829 1.03456 1.19660 0.95691 0.94869 0.99452 1.19123 0.93563 0.94171 0.95167 1.21263 0.94710 0.98228 0.97362 1.20929 0.96007 0.97409 0.97413 1.17788 0.87425 0.96379 0.98144 1.44850 1.19161 1.06266 1.32438 1.24642 0.96628 0.96410 1.01314 1.24343 1.01228 0.90753 1.04261 1.75053 1.12531 1.15576 1.13378 1.78337 1.04360 1.12477 1.14796 1.20969 0.95551 0.96526 0.98603 1.21257 0.95444 0.98484 0.96552 1.21929 0.98027 0.96828 0.99053 0.89440 0.84883 0.83070 0.83198 0.83573 0.75001 0.75263 0.81374 0.84516 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.15 10.92 21.82 0.24 -36.91 16 2 C 0.04 1.83 5.18 85.25 0.44 2.27 16 3 Si 0.98 33.85 29.59 68.60 2.03 35.88 16 4 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 5 H -0.26 -8.50 7.11 99.48 0.71 -7.79 16 6 H -0.27 -8.92 7.11 99.48 0.71 -8.21 16 7 C -0.48 -23.39 9.08 23.47 0.21 -23.18 16 8 H 0.08 3.98 7.90 -2.91 -0.02 3.96 16 9 C 0.04 1.79 5.59 -21.22 -0.12 1.67 16 10 C -0.04 -1.87 10.96 85.37 0.94 -0.93 16 11 N -0.48 -22.87 10.32 -192.76 -1.99 -24.86 16 12 C -0.03 -1.38 10.60 85.03 0.90 -0.48 16 13 C -0.09 -4.01 5.88 -20.00 -0.12 -4.12 16 14 C -0.02 -0.64 5.88 -20.03 -0.12 -0.76 16 15 C -0.10 -2.83 9.43 22.46 0.21 -2.62 16 16 C -0.10 -2.63 9.60 22.35 0.21 -2.42 16 17 C 0.09 2.41 6.68 38.13 0.25 2.66 16 18 N -0.24 -6.02 3.55 -186.96 -0.66 -6.68 16 19 C -0.04 -0.73 10.91 83.37 0.91 0.18 16 20 C -0.05 -0.92 12.05 83.74 1.01 0.09 16 21 N -0.30 -8.29 12.39 -58.24 -0.72 -9.01 16 22 N -0.12 -3.62 12.40 37.02 0.46 -3.16 16 23 C -0.10 -2.26 9.44 22.35 0.21 -2.05 16 24 C -0.10 -2.97 9.43 22.46 0.21 -2.76 16 25 C -0.13 -6.28 8.16 23.14 0.19 -6.09 16 26 H 0.29 11.92 8.30 -92.71 -0.77 11.15 16 27 H 0.13 6.11 8.06 -2.91 -0.02 6.09 16 28 H 0.15 5.45 6.19 -2.91 -0.02 5.43 16 29 H 0.15 3.91 6.21 -2.91 -0.02 3.89 16 30 H 0.15 3.69 7.68 -2.91 -0.02 3.66 16 31 H 0.23 1.87 7.09 -2.91 -0.02 1.85 16 32 H 0.23 2.11 8.06 -2.91 -0.02 2.09 16 33 H 0.17 2.58 6.75 -2.91 -0.02 2.56 16 34 H 0.14 4.30 6.25 -2.91 -0.02 4.28 16 35 H 0.13 6.16 4.44 -2.91 -0.01 6.14 16 Total: -1.00 -62.25 306.31 5.85 -56.40 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 1.15 Total: 26.88 kcal Atomic # 6 Polarization: -43.89 SS G_CDS: 5.35 Total: -38.54 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -2.68 Total: -80.62 kcal Atomic # 14 Polarization: 33.85 SS G_CDS: 2.03 Total: 35.88 kcal Total: -62.25 5.85 -56.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242416145.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.725 kcal (2) G-P(sol) polarization free energy of solvation -62.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds