Wall clock time and date at job start Tue Mar 31 2020 06:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86798 * 120.00065 * 2 1 4 4 H 1.48501 * 109.47076 * 239.99608 * 3 2 1 5 5 H 1.48494 * 109.47010 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47003 * 120.00122 * 3 2 1 7 7 C 1.40167 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99700 * 180.02562 * 7 2 1 9 9 C 1.40739 * 120.00199 * 0.02562 * 7 2 1 10 10 N 1.33976 * 120.29015 * 352.64689 * 9 7 2 11 11 C 1.31601 * 119.90194 * 180.02562 * 10 9 7 12 12 C 1.39206 * 120.52258 * 359.97438 * 11 10 9 13 13 N 1.31987 * 120.60170 * 0.02562 * 12 11 10 14 14 C 1.32929 * 120.06820 * 359.97438 * 13 12 11 15 15 C 1.47611 * 120.25558 * 179.97438 * 14 13 12 16 16 C 1.39716 * 120.19788 * 94.17382 * 15 14 13 17 17 C 1.37828 * 119.90568 * 179.67872 * 16 15 14 18 18 C 1.38560 * 120.31529 * 0.62293 * 17 16 15 19 19 C 1.38147 * 120.40139 * 359.67744 * 18 17 16 20 20 C 1.38684 * 120.07941 * 359.97438 * 19 18 17 21 21 N 1.39789 * 120.15699 * 179.97438 * 20 19 18 22 22 C 1.35844 * 126.09714 * 354.17134 * 21 20 19 23 23 C 1.35303 * 107.61009 * 179.87260 * 22 21 20 24 24 C 1.39946 * 107.96963 * 0.38928 * 23 22 21 25 25 N 1.30847 * 108.36428 * 359.75225 * 24 23 22 26 26 H 0.97003 * 120.00098 * 0.02562 * 1 2 3 27 27 H 1.08006 * 119.73423 * 179.72320 * 11 10 9 28 28 H 1.08002 * 119.69863 * 180.02562 * 12 11 10 29 29 H 1.07995 * 120.04632 * 0.02562 * 16 15 14 30 30 H 1.07997 * 119.84205 * 180.32505 * 17 16 15 31 31 H 1.07999 * 119.80252 * 179.69561 * 18 17 16 32 32 H 1.07995 * 119.96196 * 180.02562 * 19 18 17 33 33 H 1.07995 * 126.19464 * 0.02562 * 22 21 20 34 34 H 1.08000 * 126.01231 * 180.13979 * 23 22 21 35 35 H 1.07998 * 125.81485 * 179.74186 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0947 1.6963 -1.2125 5 1 1.2759 2.7464 -0.0006 6 1 3.0946 1.6963 1.2125 7 6 2.0076 -1.2139 0.0005 8 1 3.0876 -1.2139 0.0010 9 6 1.3039 -2.4327 0.0005 10 7 -0.0276 -2.4442 0.1481 11 6 -0.6779 -3.5884 0.1475 12 6 0.0067 -4.7906 -0.0061 13 7 1.3184 -4.8029 -0.1529 14 6 1.9989 -3.6611 -0.1558 15 6 3.4659 -3.6700 -0.3192 16 6 4.0329 -3.5105 -1.5861 17 6 5.4036 -3.5132 -1.7309 18 6 6.2231 -3.6862 -0.6271 19 6 5.6761 -3.8512 0.6307 20 6 4.2992 -3.8441 0.7963 21 7 3.7440 -4.0114 2.0683 22 6 4.4255 -4.3000 3.2074 23 6 3.5256 -4.3755 4.2149 24 6 2.2556 -4.1352 3.6783 25 7 2.3850 -3.9172 2.3946 26 1 -0.4850 0.8401 -0.0004 27 1 -1.7509 -3.5948 0.2711 28 1 -0.5403 -5.7219 -0.0050 29 1 3.3982 -3.3798 -2.4500 30 1 5.8408 -3.3846 -2.7099 31 1 7.2960 -3.6918 -0.7507 32 1 6.3215 -3.9851 1.4862 33 1 5.4928 -4.4411 3.2937 34 1 3.7477 -4.5881 5.2502 35 1 1.3270 -4.1307 4.2297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242709923.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:54 Heat of formation + Delta-G solvation = 158.619860 kcal Electronic energy + Delta-G solvation = -22882.088374 eV Core-core repulsion = 19654.153352 eV Total energy + Delta-G solvation = -3227.935022 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.96217 -39.04105 -38.02793 -33.99436 -33.06249 -32.41124 -31.27263 -29.64207 -29.23274 -28.20015 -25.96603 -23.57955 -22.96251 -21.89520 -21.21872 -20.15764 -19.83280 -17.74227 -17.52601 -16.02976 -15.95615 -14.98196 -14.88619 -14.61002 -14.53588 -14.22774 -13.88575 -13.35142 -13.14627 -12.73737 -12.59441 -12.34472 -12.19309 -12.04205 -11.45177 -11.34262 -11.18855 -10.85564 -10.62523 -10.28230 -10.08303 -9.84354 -9.72503 -9.40610 -8.94562 -8.66403 -8.47751 -7.61545 -7.59177 -7.23658 -6.46114 -4.61850 1.31058 1.72856 2.58613 2.70071 2.93979 3.00545 3.01227 3.03908 3.26080 3.30311 3.85834 4.20304 4.69453 4.90800 5.02949 5.22323 5.25850 5.38694 5.61383 5.68896 5.86443 5.89712 6.01580 6.08034 6.15604 6.26733 6.27033 6.42011 6.53893 6.66487 6.76590 6.89556 6.97687 7.06349 7.12610 7.17286 7.27458 7.69903 7.77656 8.08750 8.21279 8.47286 8.74623 9.34854 9.94038 10.16101 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011612 B = 0.008107 C = 0.007022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.713317 B = 3452.835165 C = 3986.392308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.409 4.409 8 H 0.082 0.918 9 C 0.247 3.753 10 N -0.452 5.452 11 C 0.084 3.916 12 C -0.115 4.115 13 N -0.409 5.409 14 C 0.001 3.999 15 C 0.038 3.962 16 C -0.083 4.083 17 C -0.131 4.131 18 C -0.111 4.111 19 C -0.146 4.146 20 C 0.161 3.839 21 N -0.309 5.309 22 C 0.034 3.966 23 C -0.263 4.263 24 C 0.027 3.973 25 N -0.225 5.225 26 H 0.277 0.723 27 H 0.124 0.876 28 H 0.121 0.879 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.170 0.830 34 H 0.145 0.855 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.982 -3.444 2.489 9.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.157 4.157 3 Si 0.728 3.272 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.440 4.440 8 H 0.100 0.900 9 C 0.122 3.878 10 N -0.169 5.169 11 C -0.086 4.086 12 C -0.275 4.275 13 N -0.121 5.121 14 C -0.148 4.148 15 C 0.035 3.965 16 C -0.102 4.102 17 C -0.150 4.150 18 C -0.130 4.130 19 C -0.167 4.167 20 C 0.068 3.932 21 N -0.084 5.084 22 C -0.108 4.108 23 C -0.292 4.292 24 C -0.161 4.161 25 N -0.042 5.042 26 H 0.088 0.912 27 H 0.142 0.858 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.187 0.813 34 H 0.163 0.837 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 8.143 -3.005 1.358 8.786 hybrid contribution 0.653 0.506 1.042 1.329 sum 8.796 -2.500 2.400 9.454 Atomic orbital electron populations 1.70043 1.07264 1.28365 1.27438 1.26110 0.94907 1.01208 0.93451 0.86413 0.80265 0.80304 0.80191 1.18587 1.19959 1.18812 1.19421 0.94261 0.89289 1.41004 0.89963 1.18979 0.88692 0.91580 0.88585 1.69496 1.07453 1.24552 1.15353 1.23407 0.99608 0.90484 0.95063 1.22368 0.90940 0.97438 1.16741 1.67662 1.08269 1.29134 1.06996 1.19649 0.90843 0.90747 1.13555 1.18094 0.91973 0.95909 0.90570 1.21221 0.94562 0.98079 0.96344 1.21025 0.93415 1.01894 0.98662 1.20797 0.99404 1.01132 0.91648 1.20585 0.91671 1.05932 0.98537 1.17747 0.91428 1.02103 0.81934 1.45889 1.05454 1.51885 1.05185 1.22598 0.99001 1.02986 0.86178 1.21440 0.92379 1.15527 0.99886 1.24079 0.98830 1.00730 0.92482 1.78044 0.92208 1.19420 1.14518 0.91204 0.85808 0.86111 0.85491 0.85947 0.85792 0.85950 0.81297 0.83695 0.80471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.70 11.51 55.56 0.64 -18.06 16 2 C 0.07 1.77 5.50 -17.32 -0.10 1.68 16 3 Si 0.90 18.69 29.56 -169.99 -5.03 13.66 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.41 -10.90 8.77 -37.91 -0.33 -11.24 16 8 H 0.08 2.14 6.90 -52.49 -0.36 1.78 16 9 C 0.25 6.73 6.16 -84.55 -0.52 6.20 16 10 N -0.45 -12.48 8.08 -10.72 -0.09 -12.57 16 11 C 0.08 2.07 11.22 -17.29 -0.19 1.87 16 12 C -0.11 -2.75 11.22 -17.13 -0.19 -2.94 16 13 N -0.41 -10.36 10.19 -8.99 -0.09 -10.46 16 14 C 0.00 0.03 3.83 -82.13 -0.31 -0.28 16 15 C 0.04 0.84 4.11 -104.74 -0.43 0.41 16 16 C -0.08 -1.57 9.79 -39.18 -0.38 -1.95 16 17 C -0.13 -1.98 10.02 -39.61 -0.40 -2.38 16 18 C -0.11 -1.55 10.03 -39.50 -0.40 -1.95 16 19 C -0.15 -2.30 9.45 -39.45 -0.37 -2.68 16 20 C 0.16 3.25 6.70 -83.28 -0.56 2.69 16 21 N -0.31 -6.31 3.80 -10.33 -0.04 -6.35 16 22 C 0.03 0.56 10.81 -16.82 -0.18 0.37 16 23 C -0.26 -4.14 10.80 -39.99 -0.43 -4.57 16 24 C 0.03 0.51 12.02 -17.33 -0.21 0.30 16 25 N -0.22 -5.12 9.31 30.64 0.29 -4.83 16 26 H 0.28 6.60 8.29 -40.82 -0.34 6.26 16 27 H 0.12 2.64 8.06 -52.48 -0.42 2.22 16 28 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 29 H 0.13 2.37 8.06 -52.49 -0.42 1.95 16 30 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.12 1.53 6.78 -52.49 -0.36 1.17 16 33 H 0.17 1.99 7.09 -52.49 -0.37 1.62 16 34 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 35 H 0.18 2.86 8.06 -52.49 -0.42 2.44 16 LS Contribution 309.67 15.07 4.67 4.67 Total: -1.00 -32.76 309.67 -7.84 -40.61 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -3.18 Total: 7.78 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -5.01 Total: -14.46 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: 0.71 Total: -52.26 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.76 -7.84 -40.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242709923.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.226 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds