Wall clock time and date at job start Tue Mar 31 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30683 * 1 3 3 Si 1.86798 * 120.00065 * 2 1 4 4 H 1.48501 * 109.47076 * 239.99608 * 3 2 1 5 5 H 1.48494 * 109.47010 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47003 * 120.00122 * 3 2 1 7 7 C 1.40167 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99700 * 180.02562 * 7 2 1 9 9 C 1.40739 * 120.00199 * 0.02562 * 7 2 1 10 10 N 1.33976 * 120.29015 * 352.64689 * 9 7 2 11 11 C 1.31601 * 119.90194 * 180.02562 * 10 9 7 12 12 C 1.39206 * 120.52258 * 359.97438 * 11 10 9 13 13 N 1.31987 * 120.60170 * 0.02562 * 12 11 10 14 14 C 1.32929 * 120.06820 * 359.97438 * 13 12 11 15 15 C 1.47611 * 120.25558 * 179.97438 * 14 13 12 16 16 C 1.39716 * 120.19788 * 94.17382 * 15 14 13 17 17 C 1.37828 * 119.90568 * 179.67872 * 16 15 14 18 18 C 1.38560 * 120.31529 * 0.62293 * 17 16 15 19 19 C 1.38147 * 120.40139 * 359.67744 * 18 17 16 20 20 C 1.38684 * 120.07941 * 359.97438 * 19 18 17 21 21 N 1.39789 * 120.15699 * 179.97438 * 20 19 18 22 22 C 1.35844 * 126.09714 * 354.17134 * 21 20 19 23 23 C 1.35303 * 107.61009 * 179.87260 * 22 21 20 24 24 C 1.39946 * 107.96963 * 0.38928 * 23 22 21 25 25 N 1.30847 * 108.36428 * 359.75225 * 24 23 22 26 26 H 0.97003 * 120.00098 * 0.02562 * 1 2 3 27 27 H 1.08006 * 119.73423 * 179.72320 * 11 10 9 28 28 H 1.08002 * 119.69863 * 180.02562 * 12 11 10 29 29 H 1.07995 * 120.04632 * 0.02562 * 16 15 14 30 30 H 1.07997 * 119.84205 * 180.32505 * 17 16 15 31 31 H 1.07999 * 119.80252 * 179.69561 * 18 17 16 32 32 H 1.07995 * 119.96196 * 180.02562 * 19 18 17 33 33 H 1.07995 * 126.19464 * 0.02562 * 22 21 20 34 34 H 1.08000 * 126.01231 * 180.13979 * 23 22 21 35 35 H 1.07998 * 125.81485 * 179.74186 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0947 1.6963 -1.2125 5 1 1.2759 2.7464 -0.0006 6 1 3.0946 1.6963 1.2125 7 6 2.0076 -1.2139 0.0005 8 1 3.0876 -1.2139 0.0010 9 6 1.3039 -2.4327 0.0005 10 7 -0.0276 -2.4442 0.1481 11 6 -0.6779 -3.5884 0.1475 12 6 0.0067 -4.7906 -0.0061 13 7 1.3184 -4.8029 -0.1529 14 6 1.9989 -3.6611 -0.1558 15 6 3.4659 -3.6700 -0.3192 16 6 4.0329 -3.5105 -1.5861 17 6 5.4036 -3.5132 -1.7309 18 6 6.2231 -3.6862 -0.6271 19 6 5.6761 -3.8512 0.6307 20 6 4.2992 -3.8441 0.7963 21 7 3.7440 -4.0114 2.0683 22 6 4.4255 -4.3000 3.2074 23 6 3.5256 -4.3755 4.2149 24 6 2.2556 -4.1352 3.6783 25 7 2.3850 -3.9172 2.3946 26 1 -0.4850 0.8401 -0.0004 27 1 -1.7509 -3.5948 0.2711 28 1 -0.5403 -5.7219 -0.0050 29 1 3.3982 -3.3798 -2.4500 30 1 5.8408 -3.3846 -2.7099 31 1 7.2960 -3.6918 -0.7507 32 1 6.3215 -3.9851 1.4862 33 1 5.4928 -4.4411 3.2937 34 1 3.7477 -4.5881 5.2502 35 1 1.3270 -4.1307 4.2297 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242709923.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:53 Heat of formation + Delta-G solvation = 138.192282 kcal Electronic energy + Delta-G solvation = -22882.974180 eV Core-core repulsion = 19654.153352 eV Total energy + Delta-G solvation = -3228.820828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.102 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.31537 -40.76837 -39.48970 -35.89556 -34.42203 -34.11460 -33.04609 -31.01630 -30.73764 -29.62356 -27.87171 -25.18734 -24.25378 -23.79648 -22.80492 -21.46621 -21.20637 -19.48254 -19.03256 -17.86231 -17.42664 -16.73953 -16.30091 -16.03424 -15.97345 -15.80723 -15.37303 -14.71183 -14.60618 -14.39892 -14.24363 -13.68707 -13.55689 -13.49685 -13.26510 -13.02007 -12.64812 -12.39535 -12.11077 -11.99565 -11.63777 -11.45321 -11.36023 -11.20380 -10.85225 -9.99438 -9.84224 -9.51051 -9.23722 -8.81595 -8.33373 -6.57652 0.01452 0.42272 0.71802 1.19931 1.31778 1.41451 1.44382 1.50801 1.65340 1.95131 2.14275 2.79591 2.89260 3.62009 3.71724 3.87292 3.95188 4.12717 4.18453 4.24873 4.35736 4.49868 4.56765 4.64722 4.72098 4.82405 4.83795 4.95608 5.05458 5.11625 5.19256 5.31225 5.43071 5.52411 5.64149 5.76487 5.87753 5.96238 6.12682 6.41687 6.56556 6.81155 6.85274 7.43952 8.01449 8.32007 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011612 B = 0.008107 C = 0.007022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.713317 B = 3452.835165 C = 3986.392308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.750 5.750 2 C 0.026 3.974 3 Si 0.979 3.021 4 H -0.251 1.251 5 H -0.263 1.263 6 H -0.264 1.264 7 C -0.433 4.433 8 H 0.079 0.921 9 C 0.222 3.778 10 N -0.488 5.488 11 C 0.066 3.934 12 C -0.118 4.118 13 N -0.432 5.432 14 C 0.020 3.980 15 C -0.014 4.014 16 C -0.104 4.104 17 C -0.122 4.122 18 C -0.091 4.091 19 C -0.139 4.139 20 C 0.134 3.866 21 N -0.325 5.325 22 C 0.037 3.963 23 C -0.259 4.259 24 C 0.010 3.990 25 N -0.296 5.296 26 H 0.283 0.717 27 H 0.148 0.852 28 H 0.147 0.853 29 H 0.112 0.888 30 H 0.160 0.840 31 H 0.177 0.823 32 H 0.162 0.838 33 H 0.218 0.782 34 H 0.184 0.816 35 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.943 -3.320 3.012 13.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.197 4.197 3 Si 0.798 3.202 4 H -0.175 1.175 5 H -0.187 1.187 6 H -0.188 1.188 7 C -0.465 4.465 8 H 0.097 0.903 9 C 0.096 3.904 10 N -0.205 5.205 11 C -0.102 4.102 12 C -0.277 4.277 13 N -0.144 5.144 14 C -0.130 4.130 15 C -0.018 4.018 16 C -0.124 4.124 17 C -0.140 4.140 18 C -0.110 4.110 19 C -0.160 4.160 20 C 0.041 3.959 21 N -0.102 5.102 22 C -0.104 4.104 23 C -0.287 4.287 24 C -0.177 4.177 25 N -0.114 5.114 26 H 0.094 0.906 27 H 0.165 0.835 28 H 0.164 0.836 29 H 0.130 0.870 30 H 0.177 0.823 31 H 0.194 0.806 32 H 0.179 0.821 33 H 0.234 0.766 34 H 0.201 0.799 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 12.076 -2.924 1.881 12.567 hybrid contribution -0.491 0.312 0.896 1.068 sum 11.585 -2.612 2.777 12.196 Atomic orbital electron populations 1.70133 1.08857 1.29618 1.28530 1.27011 0.95720 1.04515 0.92475 0.85315 0.78957 0.75641 0.80286 1.17451 1.18656 1.18822 1.19573 0.94183 0.90157 1.42595 0.90307 1.19354 0.88951 0.92897 0.89169 1.69415 1.08318 1.26016 1.16744 1.23793 1.00790 0.90251 0.95346 1.22797 0.91035 0.98304 1.15532 1.67758 1.08797 1.29638 1.08250 1.20066 0.92809 0.89800 1.10323 1.18228 0.90595 1.00094 0.92851 1.21265 0.96628 0.99615 0.94882 1.21434 0.91557 0.99861 1.01127 1.21423 1.01732 0.97653 0.90169 1.21104 0.89948 1.04118 1.00813 1.18154 0.93051 1.03286 0.81432 1.46059 1.05096 1.52685 1.06313 1.23454 1.01114 1.01106 0.84698 1.21873 0.90647 1.14488 1.01682 1.24520 1.00878 1.00210 0.92074 1.77931 0.94651 1.22304 1.16542 0.90634 0.83460 0.83605 0.87034 0.82260 0.80603 0.82086 0.76584 0.79874 0.79560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.12 11.51 21.86 0.25 -40.87 16 2 C 0.03 1.33 5.50 85.33 0.47 1.80 16 3 Si 0.98 38.88 29.56 68.60 2.03 40.91 16 4 H -0.25 -9.41 7.11 99.48 0.71 -8.71 16 5 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 6 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 7 C -0.43 -24.18 8.77 23.35 0.20 -23.98 16 8 H 0.08 4.28 6.90 -2.91 -0.02 4.26 16 9 C 0.22 12.77 6.16 40.36 0.25 13.02 16 10 N -0.49 -28.47 8.08 -187.82 -1.52 -29.98 16 11 C 0.07 3.40 11.22 84.96 0.95 4.36 16 12 C -0.12 -5.90 11.22 84.90 0.95 -4.94 16 13 N -0.43 -22.95 10.19 -182.37 -1.86 -24.80 16 14 C 0.02 1.05 3.83 42.38 0.16 1.21 16 15 C -0.01 -0.65 4.11 -19.94 -0.08 -0.73 16 16 C -0.10 -3.99 9.79 22.53 0.22 -3.77 16 17 C -0.12 -3.30 10.02 22.25 0.22 -3.07 16 18 C -0.09 -2.09 10.03 22.33 0.22 -1.87 16 19 C -0.14 -3.84 9.45 22.35 0.21 -3.63 16 20 C 0.13 5.29 6.70 38.49 0.26 5.55 16 21 N -0.33 -13.15 3.80 -186.61 -0.71 -13.86 16 22 C 0.04 1.11 10.81 83.39 0.90 2.01 16 23 C -0.26 -7.62 10.80 22.01 0.24 -7.38 16 24 C 0.01 0.40 12.02 85.25 1.02 1.43 16 25 N -0.30 -13.92 9.31 -56.97 -0.53 -14.45 16 26 H 0.28 13.98 8.29 -92.71 -0.77 13.22 16 27 H 0.15 6.59 8.06 -2.91 -0.02 6.56 16 28 H 0.15 6.29 8.06 -2.91 -0.02 6.27 16 29 H 0.11 4.40 8.06 -2.91 -0.02 4.37 16 30 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 31 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 32 H 0.16 3.07 6.78 -2.91 -0.02 3.05 16 33 H 0.22 3.99 7.09 -2.91 -0.02 3.97 16 34 H 0.18 3.77 8.06 -2.91 -0.02 3.75 16 35 H 0.19 6.29 8.06 -2.91 -0.02 6.27 16 Total: -1.00 -78.46 309.67 5.00 -73.46 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 1.13 Total: 29.61 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: 6.21 Total: -20.01 kcal Atomic # 7 Polarization: -119.60 SS G_CDS: -4.36 Total: -123.97 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -78.46 5.00 -73.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242709923.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.651 kcal (2) G-P(sol) polarization free energy of solvation -78.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds