Wall clock time and date at job start Tue Mar 31 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30771 * 1 3 3 Si 1.86797 * 119.99452 * 2 1 4 4 H 1.48504 * 109.46970 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47381 * 300.00163 * 3 2 1 6 6 H 1.48502 * 109.47451 * 60.00463 * 3 2 1 7 7 C 1.40075 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00000 * 167.66081 * 7 2 1 9 9 C 1.40823 * 120.00146 * 347.65791 * 7 2 1 10 10 C 1.40366 * 120.41369 * 331.62135 * 9 7 2 11 11 C 1.40014 * 117.97820 * 179.97438 * 10 9 7 12 12 C 1.40789 * 121.41286 * 179.97438 * 11 10 9 13 13 C 1.36124 * 119.47295 * 180.02562 * 12 11 10 14 14 C 1.39157 * 121.47051 * 359.97438 * 13 12 11 15 15 C 1.36242 * 121.75104 * 0.02562 * 14 13 12 16 16 C 1.40475 * 119.70758 * 359.97438 * 15 14 13 17 17 N 1.33663 * 120.97663 * 180.23481 * 16 15 14 18 18 C 1.31624 * 121.73874 * 180.29054 * 17 16 15 19 19 C 1.47817 * 119.45206 * 179.75749 * 18 17 16 20 20 C 1.40044 * 120.86551 * 316.43345 * 19 18 17 21 21 N 1.32021 * 119.00991 * 180.02562 * 20 19 18 22 22 C 1.32614 * 120.89907 * 359.97438 * 21 20 19 23 23 N 1.38150 * 119.04360 * 179.97438 * 22 21 20 24 24 N 1.32613 * 121.91284 * 0.26104 * 22 21 20 25 25 C 1.32021 * 120.89609 * 359.47212 * 24 22 21 26 26 H 0.96997 * 120.00408 * 359.97438 * 1 2 3 27 27 H 1.08000 * 121.00802 * 0.02562 * 10 9 7 28 28 H 1.08001 * 120.26066 * 0.04140 * 12 11 10 29 29 H 1.07999 * 119.26249 * 179.97438 * 13 12 11 30 30 H 1.08002 * 119.12981 * 179.97438 * 14 13 12 31 31 H 1.08000 * 120.15186 * 180.02562 * 15 14 13 32 32 H 1.08002 * 120.49295 * 0.03951 * 20 19 18 33 33 H 0.97005 * 119.99571 * 359.97438 * 23 22 21 34 34 H 0.96996 * 119.99955 * 180.02562 * 23 22 21 35 35 H 1.07996 * 120.49883 * 180.27689 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.7016 1.3465 -0.0006 5 1 1.8827 2.3966 -1.2125 6 1 1.8829 2.3965 1.2125 7 6 2.0081 -1.2131 -0.0005 8 1 3.0694 -1.2238 -0.2004 9 6 1.3285 -2.4187 0.2596 10 6 0.1803 -2.4272 1.0670 11 6 -0.4556 -3.6542 1.2917 12 6 -1.6115 -3.7463 2.0901 13 6 -2.1975 -4.9597 2.2828 14 6 -1.6800 -6.1161 1.7071 15 6 -0.5645 -6.0903 0.9252 16 6 0.0896 -4.8705 0.6856 17 7 1.1830 -4.8152 -0.0812 18 6 1.8110 -3.6815 -0.3111 19 6 3.0191 -3.6795 -1.1628 20 6 4.0030 -4.6652 -1.0164 21 7 5.0676 -4.6281 -1.7963 22 6 5.2111 -3.6756 -2.7078 23 7 6.3407 -3.6731 -3.5031 24 7 4.3045 -2.7222 -2.8743 25 6 3.2093 -2.6921 -2.1376 26 1 -0.4850 0.8400 0.0004 27 1 -0.2015 -1.5149 1.5010 28 1 -2.0301 -2.8611 2.5458 29 1 -3.0839 -5.0265 2.8962 30 1 -2.1751 -7.0592 1.8854 31 1 -0.1853 -7.0035 0.4908 32 1 3.8925 -5.4443 -0.2766 33 1 7.0149 -4.3614 -3.3901 34 1 6.4600 -2.9827 -4.1739 35 1 2.4731 -1.9153 -2.2816 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243873267.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:49 Heat of formation + Delta-G solvation = 91.025990 kcal Electronic energy + Delta-G solvation = -21879.054844 eV Core-core repulsion = 18648.188732 eV Total energy + Delta-G solvation = -3230.866112 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.37809 -38.92984 -36.25973 -34.52811 -34.20677 -33.14222 -31.75473 -30.90957 -29.33765 -27.98343 -25.77423 -24.04935 -23.70486 -21.93345 -21.39645 -20.57412 -18.18028 -17.62252 -17.52255 -16.57398 -16.22779 -15.50042 -15.11369 -14.85697 -14.53145 -13.93096 -13.69915 -13.48047 -13.12281 -12.98673 -12.82771 -12.64922 -12.01447 -11.81370 -11.43168 -11.20237 -10.97775 -10.87572 -10.78325 -10.50178 -10.34324 -10.26943 -9.93426 -9.64069 -9.05958 -8.69391 -8.41771 -8.03969 -7.37138 -7.16197 -7.00838 -4.64892 1.23454 1.71643 1.82184 2.08751 2.83494 2.92396 2.97799 3.38026 3.49499 3.68783 3.80690 4.43393 4.58201 4.72265 5.08688 5.36076 5.37453 5.46773 5.60088 5.64790 5.74900 5.93493 6.16117 6.21798 6.30236 6.48343 6.60362 6.71939 6.77357 6.84574 6.95880 7.19644 7.27881 7.31153 7.35203 7.50501 7.58591 7.67287 7.77251 7.84793 8.19727 8.38566 8.44942 8.78621 9.13727 9.81711 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011296 B = 0.006966 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.193812 B = 4018.622184 C = 6322.335920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.433 4.433 8 H 0.087 0.913 9 C 0.077 3.923 10 C -0.166 4.166 11 C -0.046 4.046 12 C -0.128 4.128 13 C -0.118 4.118 14 C -0.176 4.176 15 C -0.061 4.061 16 C 0.030 3.970 17 N -0.460 5.460 18 C 0.131 3.869 19 C -0.160 4.160 20 C 0.204 3.796 21 N -0.578 5.578 22 C 0.546 3.454 23 N -0.829 5.829 24 N -0.574 5.574 25 C 0.221 3.779 26 H 0.288 0.712 27 H 0.134 0.866 28 H 0.111 0.889 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.165 0.835 33 H 0.409 0.591 34 H 0.410 0.590 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.696 -2.137 -1.341 4.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.148 4.148 3 Si 0.735 3.265 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.461 4.461 8 H 0.105 0.895 9 C 0.072 3.928 10 C -0.192 4.192 11 C -0.048 4.048 12 C -0.147 4.147 13 C -0.136 4.136 14 C -0.196 4.196 15 C -0.080 4.080 16 C -0.093 4.093 17 N -0.167 5.167 18 C -0.025 4.025 19 C -0.168 4.168 20 C 0.037 3.963 21 N -0.301 5.301 22 C 0.188 3.812 23 N -0.378 5.378 24 N -0.297 5.297 25 C 0.052 3.948 26 H 0.099 0.901 27 H 0.151 0.849 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.182 0.818 33 H 0.239 0.761 34 H 0.240 0.760 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 4.510 -2.814 -2.234 5.766 hybrid contribution -0.599 1.561 0.731 1.825 sum 3.910 -1.253 -1.503 4.373 Atomic orbital electron populations 1.69752 1.07667 1.30081 1.32091 1.25998 0.94894 1.01654 0.92298 0.86166 0.81061 0.80250 0.79044 1.18027 1.19390 1.19372 1.19624 0.96575 0.90125 1.39792 0.89463 1.19184 0.92551 0.91405 0.89658 1.21520 0.99601 0.95461 1.02598 1.19717 0.94794 0.94041 0.96274 1.20866 0.96248 0.97052 1.00565 1.20482 0.99602 0.93043 1.00516 1.20276 0.98803 0.97592 1.02973 1.20495 0.94622 0.95766 0.97095 1.19285 0.95372 0.92592 1.02039 1.67394 1.07390 1.28145 1.13779 1.20607 0.94644 0.89576 0.97697 1.19844 0.97058 0.99282 1.00664 1.23025 0.85867 0.94544 0.92894 1.67788 1.26155 1.26619 1.09518 1.19386 0.87601 0.86582 0.87660 1.41538 1.20599 1.35136 1.40576 1.67914 1.04753 1.26092 1.30920 1.23392 0.91308 0.94208 0.85846 0.90102 0.84867 0.87050 0.87830 0.87676 0.86879 0.81790 0.76093 0.75999 0.80302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.67 10.92 55.55 0.61 -17.06 16 2 C 0.07 1.60 5.24 -17.31 -0.09 1.51 16 3 Si 0.91 16.86 29.58 -169.99 -5.03 11.83 16 4 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 5 H -0.27 -4.92 7.11 56.52 0.40 -4.51 16 6 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.43 -9.94 6.80 -37.92 -0.26 -10.20 16 8 H 0.09 1.97 6.50 -52.49 -0.34 1.63 16 9 C 0.08 1.85 5.68 -104.69 -0.59 1.25 16 10 C -0.17 -4.02 8.52 -38.12 -0.32 -4.34 16 11 C -0.05 -1.05 5.87 -104.97 -0.62 -1.67 16 12 C -0.13 -2.58 9.80 -39.38 -0.39 -2.96 16 13 C -0.12 -2.11 9.91 -40.00 -0.40 -2.51 16 14 C -0.18 -3.12 9.90 -39.96 -0.40 -3.52 16 15 C -0.06 -1.21 9.98 -39.46 -0.39 -1.60 16 16 C 0.03 0.68 6.74 -82.93 -0.56 0.12 16 17 N -0.46 -10.60 10.08 -4.84 -0.05 -10.65 16 18 C 0.13 2.99 6.59 -80.61 -0.53 2.46 16 19 C -0.16 -3.29 5.29 -104.62 -0.55 -3.84 16 20 C 0.20 3.84 10.96 -16.79 -0.18 3.65 16 21 N -0.58 -10.40 10.44 -13.63 -0.14 -10.55 16 22 C 0.55 9.39 8.66 -322.87 -2.80 6.60 16 23 N -0.83 -10.22 9.05 29.75 0.27 -9.95 16 24 N -0.57 -10.67 10.44 -13.63 -0.14 -10.82 16 25 C 0.22 4.36 9.14 -16.79 -0.15 4.20 16 26 H 0.29 5.96 8.29 -40.82 -0.34 5.63 16 27 H 0.13 3.27 6.32 -52.49 -0.33 2.94 16 28 H 0.11 2.05 8.06 -52.49 -0.42 1.63 16 29 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.11 2.02 8.06 -52.49 -0.42 1.60 16 32 H 0.16 2.86 8.06 -52.49 -0.42 2.44 16 33 H 0.41 4.12 8.94 -40.82 -0.36 3.75 16 34 H 0.41 4.21 8.94 -40.82 -0.36 3.85 16 35 H 0.18 3.57 6.81 -52.49 -0.36 3.21 16 LS Contribution 307.00 15.07 4.63 4.63 Total: -1.00 -26.89 307.00 -11.10 -37.99 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -3.01 Total: 15.42 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -8.23 Total: -10.85 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.54 Total: -59.02 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.83 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -26.89 -11.10 -37.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243873267.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.017 kcal (2) G-P(sol) polarization free energy of solvation -26.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds