Wall clock time and date at job start Tue Mar 31 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30771 * 1 3 3 Si 1.86797 * 119.99452 * 2 1 4 4 H 1.48504 * 109.46970 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47381 * 300.00163 * 3 2 1 6 6 H 1.48502 * 109.47451 * 60.00463 * 3 2 1 7 7 C 1.40075 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00000 * 167.66081 * 7 2 1 9 9 C 1.40823 * 120.00146 * 347.65791 * 7 2 1 10 10 C 1.40366 * 120.41369 * 331.62135 * 9 7 2 11 11 C 1.40014 * 117.97820 * 179.97438 * 10 9 7 12 12 C 1.40789 * 121.41286 * 179.97438 * 11 10 9 13 13 C 1.36124 * 119.47295 * 180.02562 * 12 11 10 14 14 C 1.39157 * 121.47051 * 359.97438 * 13 12 11 15 15 C 1.36242 * 121.75104 * 0.02562 * 14 13 12 16 16 C 1.40475 * 119.70758 * 359.97438 * 15 14 13 17 17 N 1.33663 * 120.97663 * 180.23481 * 16 15 14 18 18 C 1.31624 * 121.73874 * 180.29054 * 17 16 15 19 19 C 1.47817 * 119.45206 * 179.75749 * 18 17 16 20 20 C 1.40044 * 120.86551 * 316.43345 * 19 18 17 21 21 N 1.32021 * 119.00991 * 180.02562 * 20 19 18 22 22 C 1.32614 * 120.89907 * 359.97438 * 21 20 19 23 23 N 1.38150 * 119.04360 * 179.97438 * 22 21 20 24 24 N 1.32613 * 121.91284 * 0.26104 * 22 21 20 25 25 C 1.32021 * 120.89609 * 359.47212 * 24 22 21 26 26 H 0.96997 * 120.00408 * 359.97438 * 1 2 3 27 27 H 1.08000 * 121.00802 * 0.02562 * 10 9 7 28 28 H 1.08001 * 120.26066 * 0.04140 * 12 11 10 29 29 H 1.07999 * 119.26249 * 179.97438 * 13 12 11 30 30 H 1.08002 * 119.12981 * 179.97438 * 14 13 12 31 31 H 1.08000 * 120.15186 * 180.02562 * 15 14 13 32 32 H 1.08002 * 120.49295 * 0.03951 * 20 19 18 33 33 H 0.97005 * 119.99571 * 359.97438 * 23 22 21 34 34 H 0.96996 * 119.99955 * 180.02562 * 23 22 21 35 35 H 1.07996 * 120.49883 * 180.27689 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 3.7016 1.3465 -0.0006 5 1 1.8827 2.3966 -1.2125 6 1 1.8829 2.3965 1.2125 7 6 2.0081 -1.2131 -0.0005 8 1 3.0694 -1.2238 -0.2004 9 6 1.3285 -2.4187 0.2596 10 6 0.1803 -2.4272 1.0670 11 6 -0.4556 -3.6542 1.2917 12 6 -1.6115 -3.7463 2.0901 13 6 -2.1975 -4.9597 2.2828 14 6 -1.6800 -6.1161 1.7071 15 6 -0.5645 -6.0903 0.9252 16 6 0.0896 -4.8705 0.6856 17 7 1.1830 -4.8152 -0.0812 18 6 1.8110 -3.6815 -0.3111 19 6 3.0191 -3.6795 -1.1628 20 6 4.0030 -4.6652 -1.0164 21 7 5.0676 -4.6281 -1.7963 22 6 5.2111 -3.6756 -2.7078 23 7 6.3407 -3.6731 -3.5031 24 7 4.3045 -2.7222 -2.8743 25 6 3.2093 -2.6921 -2.1376 26 1 -0.4850 0.8400 0.0004 27 1 -0.2015 -1.5149 1.5010 28 1 -2.0301 -2.8611 2.5458 29 1 -3.0839 -5.0265 2.8962 30 1 -2.1751 -7.0592 1.8854 31 1 -0.1853 -7.0035 0.4908 32 1 3.8925 -5.4443 -0.2766 33 1 7.0149 -4.3614 -3.3901 34 1 6.4600 -2.9827 -4.1739 35 1 2.4731 -1.9153 -2.2816 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243873267.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:48 Heat of formation + Delta-G solvation = 77.066266 kcal Electronic energy + Delta-G solvation = -21879.660184 eV Core-core repulsion = 18648.188732 eV Total energy + Delta-G solvation = -3231.471451 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.83412 -40.53922 -37.81443 -36.05052 -35.66122 -34.60423 -33.40071 -32.39421 -30.95169 -29.50549 -27.43814 -25.53802 -25.20074 -23.57128 -22.92104 -22.21661 -19.79314 -18.99062 -18.88704 -18.18057 -17.78800 -17.11658 -16.39287 -16.35728 -15.95754 -15.38525 -15.21770 -15.01311 -14.67174 -14.64146 -14.34705 -14.23744 -13.65567 -13.44466 -12.94422 -12.80128 -12.46938 -12.40305 -12.27706 -11.99003 -11.74628 -11.73234 -11.54510 -11.27401 -10.71949 -10.21191 -10.05980 -9.49674 -9.00897 -8.77453 -8.59713 -6.38606 -0.32599 0.21619 0.24124 0.52639 1.34529 1.39144 1.52130 1.69956 2.14215 2.23436 2.26620 2.90600 2.99136 3.26720 3.51397 3.72151 3.85340 4.03743 4.10085 4.20518 4.29845 4.46897 4.62365 4.66278 4.70542 4.93080 5.08310 5.09403 5.21515 5.36683 5.40181 5.58168 5.71536 5.79492 5.89498 5.96163 6.00537 6.25585 6.38399 6.43032 6.49484 6.67688 6.73758 7.41800 7.46358 8.19335 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011296 B = 0.006966 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.193812 B = 4018.622184 C = 6322.335920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.040 3.960 3 Si 0.975 3.025 4 H -0.260 1.260 5 H -0.262 1.262 6 H -0.264 1.264 7 C -0.447 4.447 8 H 0.084 0.916 9 C 0.053 3.947 10 C -0.192 4.192 11 C -0.068 4.068 12 C -0.149 4.149 13 C -0.105 4.105 14 C -0.160 4.160 15 C -0.076 4.076 16 C 0.003 3.997 17 N -0.470 5.470 18 C 0.124 3.876 19 C -0.183 4.183 20 C 0.212 3.788 21 N -0.579 5.579 22 C 0.542 3.458 23 N -0.803 5.803 24 N -0.581 5.581 25 C 0.222 3.778 26 H 0.294 0.706 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.130 0.870 32 H 0.175 0.825 33 H 0.423 0.577 34 H 0.422 0.578 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.882 -3.180 -1.323 5.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.178 4.178 3 Si 0.796 3.204 4 H -0.184 1.184 5 H -0.186 1.186 6 H -0.189 1.189 7 C -0.476 4.476 8 H 0.102 0.898 9 C 0.048 3.952 10 C -0.217 4.217 11 C -0.070 4.070 12 C -0.168 4.168 13 C -0.123 4.123 14 C -0.180 4.180 15 C -0.095 4.095 16 C -0.119 4.119 17 N -0.177 5.177 18 C -0.033 4.033 19 C -0.192 4.192 20 C 0.044 3.956 21 N -0.302 5.302 22 C 0.183 3.817 23 N -0.353 5.353 24 N -0.304 5.304 25 C 0.054 3.946 26 H 0.105 0.895 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.163 0.837 30 H 0.166 0.834 31 H 0.148 0.852 32 H 0.192 0.808 33 H 0.256 0.744 34 H 0.255 0.745 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.734 -3.872 -2.249 6.516 hybrid contribution -0.694 1.710 0.718 1.980 sum 4.040 -2.162 -1.531 4.831 Atomic orbital electron populations 1.69803 1.08894 1.31158 1.32867 1.26696 0.95444 1.04148 0.91482 0.85224 0.79409 0.76494 0.79253 1.18375 1.18627 1.18863 1.19677 0.96416 0.90630 1.40870 0.89778 1.19480 0.93087 0.92452 0.90190 1.21474 1.00728 0.95637 1.03904 1.20014 0.95989 0.93835 0.97174 1.21075 0.95940 0.98812 1.00974 1.20966 1.00011 0.91911 0.99364 1.20796 0.97412 0.99321 1.00475 1.20790 0.95451 0.95218 0.98038 1.19823 0.95833 0.93803 1.02446 1.67444 1.07818 1.28191 1.14256 1.20862 0.95335 0.89250 0.97824 1.19772 0.97182 1.00706 1.01512 1.23145 0.85546 0.94044 0.92865 1.67890 1.25662 1.26869 1.09794 1.19796 0.88292 0.85919 0.87676 1.41539 1.19020 1.35504 1.39278 1.67949 1.04764 1.26757 1.30958 1.23223 0.91644 0.93799 0.85984 0.89455 0.86318 0.86217 0.83727 0.83423 0.85200 0.80822 0.74421 0.74495 0.81320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.25 10.92 21.85 0.24 -38.02 16 2 C 0.04 1.84 5.24 85.30 0.45 2.28 16 3 Si 0.98 35.21 29.58 68.60 2.03 37.24 16 4 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 5 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 6 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 7 C -0.45 -21.56 6.80 23.35 0.16 -21.40 16 8 H 0.08 3.97 6.50 -2.91 -0.02 3.96 16 9 C 0.05 2.68 5.68 -19.91 -0.11 2.56 16 10 C -0.19 -9.78 8.52 23.22 0.20 -9.58 16 11 C -0.07 -3.21 5.87 -20.09 -0.12 -3.33 16 12 C -0.15 -5.93 9.80 22.40 0.22 -5.71 16 13 C -0.10 -3.42 9.91 22.00 0.22 -3.20 16 14 C -0.16 -5.12 9.90 22.03 0.22 -4.90 16 15 C -0.08 -2.90 9.98 22.35 0.22 -2.68 16 16 C 0.00 0.15 6.74 41.54 0.28 0.43 16 17 N -0.47 -22.24 10.08 -169.22 -1.71 -23.95 16 18 C 0.12 5.89 6.59 43.93 0.29 6.18 16 19 C -0.18 -7.73 5.29 -19.87 -0.11 -7.83 16 20 C 0.21 7.99 10.96 85.10 0.93 8.92 16 21 N -0.58 -20.23 10.44 -197.03 -2.06 -22.29 16 22 C 0.54 17.93 8.66 261.51 2.26 20.19 16 23 N -0.80 -17.86 9.05 -59.78 -0.54 -18.40 16 24 N -0.58 -21.39 10.44 -197.04 -2.06 -23.44 16 25 C 0.22 9.00 9.14 85.10 0.78 9.78 16 26 H 0.29 12.62 8.29 -92.71 -0.77 11.85 16 27 H 0.12 6.22 6.32 -2.91 -0.02 6.20 16 28 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 29 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 30 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 31 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 32 H 0.17 6.07 8.06 -2.91 -0.02 6.05 16 33 H 0.42 7.32 8.94 -92.70 -0.83 6.49 16 34 H 0.42 7.58 8.94 -92.71 -0.83 6.75 16 35 H 0.17 7.10 6.81 -2.91 -0.02 7.08 16 Total: -1.00 -59.91 307.00 1.32 -58.59 By element: Atomic # 1 Polarization: 39.03 SS G_CDS: -0.48 Total: 38.55 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 5.89 Total: -8.28 kcal Atomic # 7 Polarization: -119.98 SS G_CDS: -6.12 Total: -126.10 kcal Atomic # 14 Polarization: 35.21 SS G_CDS: 2.03 Total: 37.24 kcal Total: -59.91 1.32 -58.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243873267.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.661 kcal (2) G-P(sol) polarization free energy of solvation -59.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds