Wall clock time and date at job start Tue Mar 31 2020 06:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86806 * 119.99725 * 2 1 4 4 H 1.48509 * 109.46972 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47491 * 119.99605 * 3 2 1 6 6 H 1.48495 * 109.46983 * 240.00197 * 3 2 1 7 7 C 1.40028 * 120.00516 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00099 * 357.95311 * 7 2 1 9 9 C 1.41320 * 120.00112 * 177.94866 * 7 2 1 10 10 C 1.40882 * 120.14270 * 179.50715 * 9 7 2 11 11 N 1.31867 * 119.97011 * 179.75562 * 10 9 7 12 12 C 1.32203 * 120.28823 * 0.51868 * 11 10 9 13 13 C 1.40046 * 120.29297 * 359.73356 * 12 11 10 14 14 C 1.48179 * 119.98893 * 179.97438 * 13 12 11 15 15 C 1.39551 * 119.98739 * 184.74684 * 14 13 12 16 16 C 1.37658 * 120.01552 * 179.72450 * 15 14 13 17 17 C 1.39682 * 119.98342 * 0.52940 * 16 15 14 18 18 C 1.47788 * 120.01308 * 179.72202 * 17 16 15 19 19 N 1.31503 * 125.84032 * 179.71396 * 18 17 16 20 20 C 1.33725 * 109.25287 * 179.83507 * 19 18 17 21 21 C 1.34935 * 108.38946 * 0.43344 * 20 19 18 22 22 N 1.36474 * 125.84389 * 0.02816 * 18 17 16 23 23 H 0.96999 * 126.49633 * 0.02562 * 22 18 17 24 24 C 1.39677 * 119.97027 * 359.74498 * 17 16 15 25 25 C 1.37659 * 119.98703 * 0.02562 * 24 17 16 26 26 N 1.32600 * 120.02465 * 359.97438 * 13 12 11 27 27 H 0.97002 * 119.99170 * 174.82586 * 1 2 3 28 28 H 1.07997 * 120.01597 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.84955 * 179.74821 * 12 11 10 30 30 H 1.08003 * 119.99450 * 359.97438 * 15 14 13 31 31 H 1.08001 * 120.00951 * 180.27908 * 16 15 14 32 32 H 1.07997 * 125.80570 * 180.13499 * 20 19 18 33 33 H 1.08005 * 126.47729 * 179.74496 * 21 20 19 34 34 H 1.08006 * 120.00606 * 179.97438 * 24 17 16 35 35 H 1.07991 * 119.99287 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 1.2762 2.7465 -0.0006 5 1 3.0950 1.6967 1.2125 6 1 3.0950 1.6965 -1.2125 7 6 2.0076 -1.2126 0.0005 8 1 1.4683 -2.1476 0.0344 9 6 3.4201 -1.2129 -0.0433 10 6 4.1280 -2.4310 -0.0324 11 7 5.4459 -2.4274 -0.0782 12 6 6.1084 -1.2843 -0.1242 13 6 5.4166 -0.0666 -0.1302 14 6 6.1660 1.2107 -0.1812 15 6 5.4832 2.4241 -0.0873 16 6 6.1793 3.6110 -0.1290 17 6 7.5683 3.6008 -0.2764 18 6 8.3157 4.8747 -0.3273 19 7 9.6184 4.9985 -0.4573 20 6 9.9391 6.2967 -0.4680 21 6 8.8058 7.0163 -0.3314 22 7 7.7727 6.1238 -0.2416 23 1 6.8325 6.3382 -0.1364 24 6 8.2505 2.3860 -0.3760 25 6 7.5536 1.1997 -0.3295 26 7 4.0912 -0.0563 -0.0902 27 1 -0.4849 -0.8367 -0.0758 28 1 3.5914 -3.3673 0.0091 29 1 7.1878 -1.2896 -0.1574 30 1 4.4087 2.4321 0.0221 31 1 5.6513 4.5499 -0.0517 32 1 10.9361 6.7004 -0.5644 33 1 8.7289 8.0931 -0.2992 34 1 9.3244 2.3774 -0.4904 35 1 8.0810 0.2605 -0.4062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243977186.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:52 Heat of formation + Delta-G solvation = 110.530964 kcal Electronic energy + Delta-G solvation = -21416.011451 eV Core-core repulsion = 18185.991138 eV Total energy + Delta-G solvation = -3230.020313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.102 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.05604 -39.80237 -38.45844 -34.39258 -33.43087 -32.77283 -32.21408 -30.84360 -30.28714 -28.08618 -26.07399 -24.27510 -23.19355 -22.00217 -21.69733 -20.79552 -20.30343 -18.69892 -18.62985 -16.69333 -16.18731 -15.81564 -15.25350 -15.16124 -14.70874 -14.44902 -13.83532 -13.78298 -13.75340 -13.65941 -13.09921 -12.99266 -12.64515 -12.53290 -11.80448 -11.40169 -11.26137 -11.22526 -10.72325 -10.32814 -10.21424 -10.14186 -9.86588 -9.61996 -9.32795 -9.23894 -8.84443 -8.43211 -7.89569 -7.57339 -7.36470 -5.08233 0.66859 1.56114 1.89258 2.35728 2.52560 2.87139 3.13114 3.31794 3.45631 3.75365 4.01708 4.13549 4.22070 4.48161 4.73798 4.80913 4.94931 5.05702 5.17849 5.28936 5.31205 5.44031 5.59531 5.65382 5.80389 5.90309 5.92573 5.99597 6.23488 6.34990 6.46062 6.52002 6.59094 6.68062 6.86605 6.99270 7.13164 7.15518 7.18693 7.73261 7.89158 7.90137 8.26599 8.68113 9.15771 9.71893 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022037 B = 0.004352 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.300150 B = 6432.847597 C = 7690.266974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.040 3.960 3 Si 1.144 2.856 4 H -0.326 1.326 5 H -0.283 1.283 6 H -0.277 1.277 7 C -0.449 4.449 8 H 0.091 0.909 9 C 0.201 3.799 10 C -0.036 4.036 11 N -0.419 5.419 12 C -0.100 4.100 13 C 0.163 3.837 14 C -0.013 4.013 15 C -0.094 4.094 16 C -0.114 4.114 17 C -0.025 4.025 18 C 0.256 3.744 19 N -0.478 5.478 20 C -0.027 4.027 21 C -0.053 4.053 22 N -0.565 5.565 23 H 0.421 0.579 24 C -0.079 4.079 25 C -0.099 4.099 26 N -0.539 5.539 27 H 0.288 0.712 28 H 0.142 0.858 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.118 0.882 32 H 0.171 0.829 33 H 0.178 0.822 34 H 0.138 0.862 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.360 12.102 -0.407 16.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.183 4.183 3 Si 0.980 3.020 4 H -0.259 1.259 5 H -0.212 1.212 6 H -0.206 1.206 7 C -0.481 4.481 8 H 0.109 0.891 9 C 0.076 3.924 10 C -0.208 4.208 11 N -0.130 5.130 12 C -0.256 4.256 13 C 0.020 3.980 14 C -0.016 4.016 15 C -0.112 4.112 16 C -0.134 4.134 17 C -0.027 4.027 18 C -0.004 4.004 19 N -0.197 5.197 20 C -0.176 4.176 21 C -0.187 4.187 22 N -0.168 5.168 23 H 0.259 0.741 24 C -0.099 4.099 25 C -0.118 4.118 26 N -0.262 5.262 27 H 0.099 0.901 28 H 0.159 0.841 29 H 0.157 0.843 30 H 0.154 0.846 31 H 0.136 0.864 32 H 0.189 0.811 33 H 0.195 0.805 34 H 0.156 0.844 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 11.683 12.992 -0.416 17.477 hybrid contribution -1.048 -0.954 0.070 1.420 sum 10.634 12.037 -0.346 16.065 Atomic orbital electron populations 1.70635 1.08130 1.33218 1.28919 1.27867 0.95361 1.06310 0.88782 0.82281 0.70324 0.69970 0.79449 1.25868 1.21175 1.20567 1.20835 0.89915 0.96789 1.40586 0.89104 1.19406 0.94872 0.88062 0.90046 1.23203 0.89938 0.97966 1.09688 1.67728 1.09430 1.29478 1.06328 1.22513 0.99230 0.87750 1.16129 1.20264 0.90537 0.92425 0.94735 1.18824 0.92645 0.91849 0.98250 1.21602 1.01260 0.91035 0.97316 1.20929 0.92429 0.98258 1.01812 1.17609 0.91781 0.88837 1.04475 1.21421 0.88940 0.84960 1.05062 1.70400 1.10179 1.19802 1.19283 1.22362 0.98758 0.89037 1.07482 1.22834 0.87899 0.96503 1.11504 1.43475 1.10563 1.06790 1.55995 0.74051 1.21008 1.00425 0.90180 0.98264 1.21216 0.92818 0.98468 0.99315 1.67143 1.06692 1.28292 1.24120 0.90069 0.84089 0.84256 0.84633 0.86392 0.81147 0.80459 0.84406 0.84582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.21 13.65 55.55 0.76 -19.45 16 2 C 0.04 1.02 5.52 -17.35 -0.10 0.93 16 3 Si 1.14 26.57 22.21 -169.99 -3.78 22.80 16 4 H -0.33 -7.39 7.11 56.52 0.40 -6.99 16 5 H -0.28 -6.52 6.65 56.52 0.38 -6.14 16 6 H -0.28 -6.39 6.47 56.52 0.37 -6.03 16 7 C -0.45 -11.46 9.59 -37.74 -0.36 -11.82 16 8 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 9 C 0.20 5.05 6.42 -84.84 -0.54 4.50 16 10 C -0.04 -0.84 10.98 -16.54 -0.18 -1.02 16 11 N -0.42 -9.55 10.47 -12.04 -0.13 -9.68 16 12 C -0.10 -2.12 10.61 -16.71 -0.18 -2.30 16 13 C 0.16 3.59 6.73 -82.77 -0.56 3.03 16 14 C -0.01 -0.25 5.88 -104.83 -0.62 -0.87 16 15 C -0.09 -1.70 9.45 -39.30 -0.37 -2.07 16 16 C -0.11 -1.66 9.68 -39.25 -0.38 -2.04 16 17 C -0.02 -0.35 5.88 -104.92 -0.62 -0.97 16 18 C 0.26 3.41 7.77 -154.62 -1.20 2.21 16 19 N -0.48 -6.67 10.86 -11.22 -0.12 -6.79 16 20 C -0.03 -0.29 11.84 -17.90 -0.21 -0.50 16 21 C -0.05 -0.46 12.03 -16.50 -0.20 -0.66 16 22 N -0.57 -5.64 6.07 -10.55 -0.06 -5.70 16 23 H 0.42 3.03 8.07 -40.82 -0.33 2.70 16 24 C -0.08 -1.13 9.67 -39.26 -0.38 -1.51 16 25 C -0.10 -1.53 9.40 -39.30 -0.37 -1.90 16 26 N -0.54 -13.24 4.31 -7.51 -0.03 -13.27 16 27 H 0.29 6.98 8.72 -40.82 -0.36 6.62 16 28 H 0.14 2.98 8.06 -52.49 -0.42 2.56 16 29 H 0.14 2.46 6.20 -52.49 -0.33 2.14 16 30 H 0.14 2.67 2.56 -52.48 -0.13 2.54 16 31 H 0.12 1.31 7.16 -52.49 -0.38 0.93 16 32 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.18 0.86 8.06 -52.48 -0.42 0.44 16 34 H 0.14 1.79 7.83 -52.48 -0.41 1.38 16 35 H 0.14 1.81 6.20 -52.49 -0.33 1.49 16 LS Contribution 298.22 15.07 4.49 4.49 Total: -1.00 -30.24 298.22 -7.94 -38.17 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -2.81 Total: 4.41 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -6.26 Total: -14.97 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.41 Total: -54.90 kcal Atomic # 14 Polarization: 26.57 SS G_CDS: -3.78 Total: 22.80 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.24 -7.94 -38.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243977186.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.706 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds