Wall clock time and date at job start Tue Mar 31 2020 06:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86806 * 119.99725 * 2 1 4 4 H 1.48509 * 109.46972 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47491 * 119.99605 * 3 2 1 6 6 H 1.48495 * 109.46983 * 240.00197 * 3 2 1 7 7 C 1.40028 * 120.00516 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00099 * 357.95311 * 7 2 1 9 9 C 1.41320 * 120.00112 * 177.94866 * 7 2 1 10 10 C 1.40882 * 120.14270 * 179.50715 * 9 7 2 11 11 N 1.31867 * 119.97011 * 179.75562 * 10 9 7 12 12 C 1.32203 * 120.28823 * 0.51868 * 11 10 9 13 13 C 1.40046 * 120.29297 * 359.73356 * 12 11 10 14 14 C 1.48179 * 119.98893 * 179.97438 * 13 12 11 15 15 C 1.39551 * 119.98739 * 184.74684 * 14 13 12 16 16 C 1.37658 * 120.01552 * 179.72450 * 15 14 13 17 17 C 1.39682 * 119.98342 * 0.52940 * 16 15 14 18 18 C 1.47788 * 120.01308 * 179.72202 * 17 16 15 19 19 N 1.31503 * 125.84032 * 179.71396 * 18 17 16 20 20 C 1.33725 * 109.25287 * 179.83507 * 19 18 17 21 21 C 1.34935 * 108.38946 * 0.43344 * 20 19 18 22 22 N 1.36474 * 125.84389 * 0.02816 * 18 17 16 23 23 H 0.96999 * 126.49633 * 0.02562 * 22 18 17 24 24 C 1.39677 * 119.97027 * 359.74498 * 17 16 15 25 25 C 1.37659 * 119.98703 * 0.02562 * 24 17 16 26 26 N 1.32600 * 120.02465 * 359.97438 * 13 12 11 27 27 H 0.97002 * 119.99170 * 174.82586 * 1 2 3 28 28 H 1.07997 * 120.01597 * 0.02562 * 10 9 7 29 29 H 1.08000 * 119.84955 * 179.74821 * 12 11 10 30 30 H 1.08003 * 119.99450 * 359.97438 * 15 14 13 31 31 H 1.08001 * 120.00951 * 180.27908 * 16 15 14 32 32 H 1.07997 * 125.80570 * 180.13499 * 20 19 18 33 33 H 1.08005 * 126.47729 * 179.74496 * 21 20 19 34 34 H 1.08006 * 120.00606 * 179.97438 * 24 17 16 35 35 H 1.07991 * 119.99287 * 180.02562 * 25 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 1.2762 2.7465 -0.0006 5 1 3.0950 1.6967 1.2125 6 1 3.0950 1.6965 -1.2125 7 6 2.0076 -1.2126 0.0005 8 1 1.4683 -2.1476 0.0344 9 6 3.4201 -1.2129 -0.0433 10 6 4.1280 -2.4310 -0.0324 11 7 5.4459 -2.4274 -0.0782 12 6 6.1084 -1.2843 -0.1242 13 6 5.4166 -0.0666 -0.1302 14 6 6.1660 1.2107 -0.1812 15 6 5.4832 2.4241 -0.0873 16 6 6.1793 3.6110 -0.1290 17 6 7.5683 3.6008 -0.2764 18 6 8.3157 4.8747 -0.3273 19 7 9.6184 4.9985 -0.4573 20 6 9.9391 6.2967 -0.4680 21 6 8.8058 7.0163 -0.3314 22 7 7.7727 6.1238 -0.2416 23 1 6.8325 6.3382 -0.1364 24 6 8.2505 2.3860 -0.3760 25 6 7.5536 1.1997 -0.3295 26 7 4.0912 -0.0563 -0.0902 27 1 -0.4849 -0.8367 -0.0758 28 1 3.5914 -3.3673 0.0091 29 1 7.1878 -1.2896 -0.1574 30 1 4.4087 2.4321 0.0221 31 1 5.6513 4.5499 -0.0517 32 1 10.9361 6.7004 -0.5644 33 1 8.7289 8.0931 -0.2992 34 1 9.3244 2.3774 -0.4904 35 1 8.0810 0.2605 -0.4062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243977186.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:52 Heat of formation + Delta-G solvation = 91.595876 kcal Electronic energy + Delta-G solvation = -21416.832538 eV Core-core repulsion = 18185.991138 eV Total energy + Delta-G solvation = -3230.841400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.102 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.88915 -41.47426 -39.78666 -36.26055 -35.00980 -33.89143 -33.57562 -32.03807 -31.69456 -29.21768 -27.83940 -25.72646 -24.59055 -23.35690 -22.92878 -21.96508 -21.35564 -20.52137 -19.62851 -18.19579 -17.88035 -17.35526 -16.54877 -16.02183 -16.01049 -15.79341 -15.52074 -15.22862 -14.80834 -14.72137 -14.55628 -14.29159 -14.24149 -13.80268 -13.39288 -13.11458 -13.02041 -12.68659 -12.12326 -11.87052 -11.69774 -11.46401 -11.13125 -11.10089 -11.03111 -10.78492 -10.03737 -9.83711 -9.76486 -9.23151 -8.76352 -6.99976 -0.61796 0.36330 0.47278 0.66932 1.35601 1.43856 1.60517 1.91047 2.11664 2.14525 2.30285 2.53421 2.88643 3.21125 3.33479 3.46770 3.70318 3.83121 3.94077 4.01686 4.19240 4.30548 4.34176 4.48774 4.51115 4.60579 4.69399 4.77797 4.85498 5.01753 5.07417 5.23819 5.27798 5.35796 5.38724 5.50470 5.79124 5.80847 5.84129 6.05887 6.37631 6.41639 6.87007 7.05344 7.34494 7.79717 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022037 B = 0.004352 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.300150 B = 6432.847597 C = 7690.266974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.015 3.985 3 Si 1.174 2.826 4 H -0.320 1.320 5 H -0.287 1.287 6 H -0.281 1.281 7 C -0.479 4.479 8 H 0.084 0.916 9 C 0.190 3.810 10 C -0.054 4.054 11 N -0.424 5.424 12 C -0.089 4.089 13 C 0.155 3.845 14 C -0.051 4.051 15 C -0.113 4.113 16 C -0.111 4.111 17 C -0.009 4.009 18 C 0.219 3.781 19 N -0.502 5.502 20 C -0.056 4.056 21 C -0.022 4.022 22 N -0.555 5.555 23 H 0.434 0.566 24 C -0.081 4.081 25 C -0.085 4.085 26 N -0.556 5.556 27 H 0.288 0.712 28 H 0.155 0.845 29 H 0.179 0.821 30 H 0.115 0.885 31 H 0.150 0.850 32 H 0.193 0.807 33 H 0.223 0.777 34 H 0.153 0.847 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.291 14.825 -0.525 20.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.204 4.204 3 Si 1.008 2.992 4 H -0.253 1.253 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.512 4.512 8 H 0.102 0.898 9 C 0.064 3.936 10 C -0.223 4.223 11 N -0.135 5.135 12 C -0.246 4.246 13 C 0.013 3.987 14 C -0.053 4.053 15 C -0.131 4.131 16 C -0.130 4.130 17 C -0.012 4.012 18 C -0.040 4.040 19 N -0.222 5.222 20 C -0.205 4.205 21 C -0.158 4.158 22 N -0.159 5.159 23 H 0.275 0.725 24 C -0.100 4.100 25 C -0.104 4.104 26 N -0.279 5.279 27 H 0.099 0.901 28 H 0.172 0.828 29 H 0.196 0.804 30 H 0.133 0.867 31 H 0.168 0.832 32 H 0.210 0.790 33 H 0.239 0.761 34 H 0.171 0.829 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 14.573 15.680 -0.531 21.413 hybrid contribution -1.580 -1.592 0.089 2.245 sum 12.993 14.088 -0.442 19.170 Atomic orbital electron populations 1.70643 1.08298 1.33296 1.31022 1.28486 0.95653 1.07805 0.88444 0.81900 0.69506 0.68639 0.79105 1.25304 1.21567 1.20942 1.20826 0.90500 0.96678 1.43202 0.89787 1.19585 0.94980 0.89052 0.89999 1.23363 0.90389 0.98058 1.10514 1.67808 1.09062 1.30235 1.06405 1.23218 1.01032 0.87044 1.13351 1.20880 0.89915 0.94538 0.93360 1.18819 0.93849 0.90582 1.02053 1.21556 1.00544 0.92311 0.98705 1.21120 0.92671 0.98338 1.00883 1.17802 0.91732 0.89733 1.01884 1.21146 0.89114 0.85522 1.08228 1.70308 1.10735 1.21895 1.19279 1.22910 1.00708 0.88282 1.08577 1.23577 0.86642 0.98115 1.07466 1.43525 1.11658 1.06011 1.54754 0.72486 1.21201 1.01103 0.89884 0.97861 1.21348 0.91322 0.99868 0.97820 1.67126 1.08206 1.28231 1.24383 0.90067 0.82763 0.80385 0.86696 0.83210 0.79018 0.76098 0.82948 0.82552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.95 13.65 21.84 0.30 -42.65 16 2 C 0.02 0.82 5.52 85.29 0.47 1.29 16 3 Si 1.17 55.34 22.21 68.60 1.52 56.87 16 4 H -0.32 -14.48 7.11 99.48 0.71 -13.77 16 5 H -0.29 -13.44 6.65 99.48 0.66 -12.78 16 6 H -0.28 -13.17 6.47 99.48 0.64 -12.53 16 7 C -0.48 -25.48 9.59 23.46 0.23 -25.25 16 8 H 0.08 4.41 8.06 -2.91 -0.02 4.39 16 9 C 0.19 9.75 6.42 40.25 0.26 10.01 16 10 C -0.05 -2.56 10.98 85.33 0.94 -1.62 16 11 N -0.42 -18.96 10.47 -191.99 -2.01 -20.97 16 12 C -0.09 -3.64 10.61 85.08 0.90 -2.73 16 13 C 0.15 6.75 6.73 42.11 0.28 7.03 16 14 C -0.05 -1.85 5.88 -20.00 -0.12 -1.97 16 15 C -0.11 -3.98 9.45 22.45 0.21 -3.76 16 16 C -0.11 -2.98 9.68 22.48 0.22 -2.76 16 17 C -0.01 -0.24 5.88 -20.05 -0.12 -0.36 16 18 C 0.22 5.16 7.77 136.49 1.06 6.22 16 19 N -0.50 -12.59 10.86 -189.41 -2.06 -14.64 16 20 C -0.06 -1.00 11.84 83.64 0.99 -0.01 16 21 C -0.02 -0.29 12.03 83.16 1.00 0.71 16 22 N -0.56 -8.86 6.07 -187.28 -1.14 -10.00 16 23 H 0.43 4.45 8.07 -92.71 -0.75 3.70 16 24 C -0.08 -2.10 9.67 22.48 0.22 -1.89 16 25 C -0.08 -2.41 9.40 22.45 0.21 -2.20 16 26 N -0.56 -27.61 4.31 -177.68 -0.77 -28.38 16 27 H 0.29 14.58 8.72 -92.71 -0.81 13.77 16 28 H 0.16 6.65 8.06 -2.91 -0.02 6.63 16 29 H 0.18 5.71 6.20 -2.91 -0.02 5.69 16 30 H 0.12 4.53 2.56 -2.91 -0.01 4.52 16 31 H 0.15 2.90 7.16 -2.91 -0.02 2.87 16 32 H 0.19 2.35 8.06 -2.91 -0.02 2.33 16 33 H 0.22 0.75 8.06 -2.91 -0.02 0.73 16 34 H 0.15 3.52 7.83 -2.91 -0.02 3.50 16 35 H 0.16 3.65 6.20 -2.92 -0.02 3.63 16 Total: -1.00 -67.26 298.22 2.88 -64.39 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.27 Total: 12.67 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 6.75 Total: -17.28 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -5.67 Total: -116.64 kcal Atomic # 14 Polarization: 55.34 SS G_CDS: 1.52 Total: 56.87 kcal Total: -67.26 2.88 -64.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243977186.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.983 kcal (2) G-P(sol) polarization free energy of solvation -67.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds