Wall clock time and date at job start Tue Mar 31 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30801 * 1 3 3 Si 1.86797 * 120.00172 * 2 1 4 4 H 1.48502 * 109.46966 * 239.99552 * 3 2 1 5 5 H 1.48504 * 109.47126 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47372 * 119.99485 * 3 2 1 7 7 C 1.40009 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99835 * 197.65100 * 7 2 1 9 9 C 1.41004 * 119.99925 * 17.64593 * 7 2 1 10 10 C 1.41327 * 120.54985 * 23.73431 * 9 7 2 11 11 C 1.36567 * 118.42033 * 179.97438 * 10 9 7 12 12 C 1.39970 * 119.46309 * 359.97438 * 11 10 9 13 13 C 1.47829 * 119.45365 * 180.02562 * 12 11 10 14 14 C 1.40633 * 119.76867 * 4.99521 * 13 12 11 15 15 C 1.35821 * 120.93124 * 180.02562 * 14 13 12 16 16 C 1.40490 * 119.95406 * 0.25493 * 15 14 13 17 17 N 1.33807 * 121.71588 * 179.72232 * 16 15 14 18 18 C 1.31937 * 120.27890 * 180.02562 * 17 16 15 19 19 N 1.38224 * 118.66628 * 179.97438 * 18 17 16 20 20 N 1.33201 * 122.66604 * 0.02562 * 18 17 16 21 21 C 1.31625 * 121.52356 * 359.45277 * 20 18 17 22 22 C 1.40906 * 118.47382 * 0.78771 * 21 20 18 23 23 C 1.38771 * 119.76481 * 185.01980 * 13 12 11 24 24 N 1.33071 * 121.09113 * 0.27538 * 12 11 10 25 25 C 1.31244 * 121.71511 * 359.43514 * 24 12 11 26 26 H 0.96997 * 120.00243 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.79507 * 359.94415 * 10 9 7 28 28 H 1.08001 * 120.26526 * 179.97438 * 11 10 9 29 29 H 1.08005 * 119.53171 * 0.02562 * 14 13 12 30 30 H 1.07994 * 120.01740 * 179.97438 * 15 14 13 31 31 H 0.97003 * 119.99479 * 0.02562 * 19 18 17 32 32 H 0.96998 * 120.00239 * 180.02562 * 19 18 17 33 33 H 1.08003 * 120.75714 * 180.02562 * 21 20 18 34 34 H 1.07999 * 120.35646 * 359.95302 * 23 13 12 35 35 H 1.08003 * 119.79934 * 180.28777 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.0959 1.6962 -1.2125 5 1 1.2771 2.7465 -0.0006 6 1 3.0957 1.6964 1.2125 7 6 2.0080 -1.2125 0.0005 8 1 3.0499 -1.2344 0.2842 9 6 1.3527 -2.4051 -0.3691 10 6 0.2053 -2.3684 -1.1934 11 6 -0.3947 -3.5495 -1.5251 12 6 0.1384 -4.7513 -1.0447 13 6 -0.5110 -6.0297 -1.4043 14 6 -1.5895 -6.0354 -2.3068 15 6 -2.2037 -7.1962 -2.6533 16 6 -1.7660 -8.4127 -2.1035 17 7 -2.3488 -9.5760 -2.4159 18 6 -1.9148 -10.7019 -1.8823 19 7 -2.5417 -11.8843 -2.2279 20 7 -0.8978 -10.7453 -1.0233 21 6 -0.2545 -9.6550 -0.6627 22 6 -0.6753 -8.4198 -1.1946 23 6 -0.0522 -7.2157 -0.8485 24 7 1.2171 -4.7617 -0.2656 25 6 1.8321 -3.6538 0.0762 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1880 -1.4288 -1.5521 28 1 -1.2734 -3.5562 -2.1529 29 1 -1.9342 -5.1036 -2.7303 30 1 -3.0309 -7.1835 -3.3474 31 1 -3.2847 -11.8750 -2.8516 32 1 -2.2388 -12.7233 -1.8469 33 1 0.5688 -9.7045 0.0346 34 1 0.7764 -7.2092 -0.1559 35 1 2.7081 -3.6986 0.7063 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243989163.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:08 Heat of formation + Delta-G solvation = 90.681279 kcal Electronic energy + Delta-G solvation = -20979.220463 eV Core-core repulsion = 17748.339403 eV Total energy + Delta-G solvation = -3230.881060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.102 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.91251 -38.73527 -37.25662 -34.57103 -34.32050 -33.38906 -31.15613 -30.81128 -30.37891 -28.52159 -25.59515 -24.69150 -23.23382 -22.52035 -21.20280 -20.92886 -18.61379 -18.06085 -17.57810 -16.69630 -15.94367 -15.54894 -15.29411 -14.96766 -14.60134 -14.38712 -13.97652 -13.83353 -13.32043 -13.25672 -12.87808 -12.36620 -12.04373 -11.83042 -11.71828 -11.50648 -11.28453 -11.20859 -11.05475 -10.82680 -10.56213 -10.03192 -9.96964 -9.51364 -8.94428 -8.65057 -8.45007 -8.22239 -8.10369 -7.20699 -7.00438 -4.63700 0.57610 1.09101 2.16374 2.49956 2.86183 2.89424 2.91149 2.97703 3.24534 3.54098 3.66677 4.31960 4.33389 4.57969 4.73945 5.00404 5.04304 5.23751 5.53365 5.54418 5.62124 5.89416 5.97183 5.99583 6.29832 6.44941 6.51149 6.55232 6.58653 6.74581 6.84918 6.98497 7.07036 7.07685 7.15210 7.28545 7.49292 7.60620 7.67445 7.78087 8.21629 8.40839 8.51158 8.53341 9.45014 9.77684 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.050339 B = 0.002924 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.096883 B = 9574.027936 C =10040.885854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.429 4.429 8 H 0.088 0.912 9 C 0.069 3.931 10 C -0.145 4.145 11 C -0.121 4.121 12 C -0.011 4.011 13 C -0.001 4.001 14 C -0.063 4.063 15 C -0.125 4.125 16 C 0.186 3.814 17 N -0.569 5.569 18 C 0.548 3.452 19 N -0.829 5.829 20 N -0.569 5.569 21 C 0.231 3.769 22 C -0.194 4.194 23 C -0.070 4.070 24 N -0.447 5.447 25 C -0.016 4.016 26 H 0.289 0.711 27 H 0.127 0.873 28 H 0.102 0.898 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.411 0.589 32 H 0.410 0.590 33 H 0.175 0.825 34 H 0.140 0.860 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.840 -10.003 -2.967 10.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.150 4.150 3 Si 0.740 3.260 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.457 4.457 8 H 0.106 0.894 9 C 0.064 3.936 10 C -0.170 4.170 11 C -0.141 4.141 12 C -0.145 4.145 13 C -0.002 4.002 14 C -0.085 4.085 15 C -0.145 4.145 16 C 0.058 3.942 17 N -0.295 5.295 18 C 0.188 3.812 19 N -0.378 5.378 20 N -0.288 5.288 21 C 0.050 3.950 22 C -0.200 4.200 23 C -0.092 4.092 24 N -0.154 5.154 25 C -0.181 4.181 26 H 0.100 0.900 27 H 0.145 0.855 28 H 0.120 0.880 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.241 0.759 32 H 0.240 0.760 33 H 0.192 0.808 34 H 0.158 0.842 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.341 -11.459 -3.002 12.308 hybrid contribution 0.143 2.127 -0.113 2.135 sum -3.198 -9.331 -3.115 10.344 Atomic orbital electron populations 1.69772 1.07924 1.30405 1.31430 1.26118 0.94876 1.02089 0.91934 0.86197 0.80150 0.79182 0.80430 1.18416 1.19998 1.18526 1.19686 0.98367 0.90969 1.36726 0.89386 1.18624 0.92010 0.93702 0.89268 1.21330 0.98716 0.97075 0.99865 1.21305 0.99247 0.93384 1.00167 1.18666 0.98206 0.90403 1.07209 1.18639 0.94002 0.92540 0.95029 1.21142 0.94071 0.98020 0.95275 1.20389 1.01902 0.89840 1.02375 1.18559 0.91210 0.91504 0.92974 1.68126 1.33439 0.97364 1.30545 1.19200 0.87243 0.86908 0.87801 1.41585 1.38727 1.04947 1.52571 1.67635 1.10614 1.33303 1.17255 1.23440 0.93886 0.85846 0.91827 1.19354 1.00941 0.96207 1.03482 1.21174 0.99250 0.89476 0.99257 1.66895 1.06655 1.32197 1.09647 1.22442 1.02642 0.87745 1.05310 0.89992 0.85507 0.88011 0.85060 0.85117 0.75887 0.76028 0.80826 0.84187 0.85222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.96 10.92 55.55 0.61 -17.36 16 2 C 0.07 1.60 5.17 -17.33 -0.09 1.51 16 3 Si 0.92 16.64 29.59 -169.99 -5.03 11.60 16 4 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 5 H -0.28 -4.89 7.11 56.52 0.40 -4.49 16 6 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 7 C -0.43 -10.18 9.06 -37.87 -0.34 -10.52 16 8 H 0.09 1.96 7.91 -52.49 -0.41 1.54 16 9 C 0.07 1.69 5.59 -106.64 -0.60 1.09 16 10 C -0.15 -3.47 8.74 -39.01 -0.34 -3.81 16 11 C -0.12 -2.65 9.37 -39.54 -0.37 -3.02 16 12 C -0.01 -0.25 6.73 -82.76 -0.56 -0.81 16 13 C 0.00 -0.01 5.87 -104.87 -0.62 -0.63 16 14 C -0.06 -1.05 9.31 -39.54 -0.37 -1.42 16 15 C -0.13 -1.99 9.97 -39.60 -0.39 -2.38 16 16 C 0.19 3.17 6.62 -84.73 -0.56 2.61 16 17 N -0.57 -9.33 10.45 -11.88 -0.12 -9.45 16 18 C 0.55 8.10 8.63 -322.87 -2.79 5.32 16 19 N -0.83 -8.54 9.06 29.75 0.27 -8.27 16 20 N -0.57 -8.35 10.40 -13.49 -0.14 -8.49 16 21 C 0.23 3.27 11.15 -16.63 -0.19 3.09 16 22 C -0.19 -3.18 5.74 -106.82 -0.61 -3.79 16 23 C -0.07 -1.22 9.35 -38.75 -0.36 -1.59 16 24 N -0.45 -10.28 9.36 -9.11 -0.09 -10.37 16 25 C -0.02 -0.36 10.97 -16.77 -0.18 -0.55 16 26 H 0.29 6.06 8.30 -40.82 -0.34 5.73 16 27 H 0.13 3.07 6.19 -52.49 -0.32 2.74 16 28 H 0.10 1.92 6.13 -52.49 -0.32 1.60 16 29 H 0.13 1.95 6.11 -52.48 -0.32 1.63 16 30 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 31 H 0.41 3.49 8.93 -40.82 -0.36 3.13 16 32 H 0.41 3.30 8.94 -40.82 -0.36 2.93 16 33 H 0.17 1.84 8.06 -52.48 -0.42 1.41 16 34 H 0.14 2.39 7.50 -52.49 -0.39 2.00 16 35 H 0.13 2.77 8.06 -52.48 -0.42 2.35 16 LS Contribution 307.55 15.07 4.63 4.63 Total: -1.00 -28.08 307.55 -11.15 -39.23 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -2.91 Total: 13.37 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -8.37 Total: -14.90 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.53 Total: -53.94 kcal Atomic # 14 Polarization: 16.64 SS G_CDS: -5.03 Total: 11.60 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.08 -11.15 -39.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243989163.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.910 kcal (2) G-P(sol) polarization free energy of solvation -28.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds