Wall clock time and date at job start Tue Mar 31 2020 06:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30801 * 1 3 3 Si 1.86797 * 120.00172 * 2 1 4 4 H 1.48502 * 109.46966 * 239.99552 * 3 2 1 5 5 H 1.48504 * 109.47126 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47372 * 119.99485 * 3 2 1 7 7 C 1.40009 * 119.99841 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99835 * 197.65100 * 7 2 1 9 9 C 1.41004 * 119.99925 * 17.64593 * 7 2 1 10 10 C 1.41327 * 120.54985 * 23.73431 * 9 7 2 11 11 C 1.36567 * 118.42033 * 179.97438 * 10 9 7 12 12 C 1.39970 * 119.46309 * 359.97438 * 11 10 9 13 13 C 1.47829 * 119.45365 * 180.02562 * 12 11 10 14 14 C 1.40633 * 119.76867 * 4.99521 * 13 12 11 15 15 C 1.35821 * 120.93124 * 180.02562 * 14 13 12 16 16 C 1.40490 * 119.95406 * 0.25493 * 15 14 13 17 17 N 1.33807 * 121.71588 * 179.72232 * 16 15 14 18 18 C 1.31937 * 120.27890 * 180.02562 * 17 16 15 19 19 N 1.38224 * 118.66628 * 179.97438 * 18 17 16 20 20 N 1.33201 * 122.66604 * 0.02562 * 18 17 16 21 21 C 1.31625 * 121.52356 * 359.45277 * 20 18 17 22 22 C 1.40906 * 118.47382 * 0.78771 * 21 20 18 23 23 C 1.38771 * 119.76481 * 185.01980 * 13 12 11 24 24 N 1.33071 * 121.09113 * 0.27538 * 12 11 10 25 25 C 1.31244 * 121.71511 * 359.43514 * 24 12 11 26 26 H 0.96997 * 120.00243 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.79507 * 359.94415 * 10 9 7 28 28 H 1.08001 * 120.26526 * 179.97438 * 11 10 9 29 29 H 1.08005 * 119.53171 * 0.02562 * 14 13 12 30 30 H 1.07994 * 120.01740 * 179.97438 * 15 14 13 31 31 H 0.97003 * 119.99479 * 0.02562 * 19 18 17 32 32 H 0.96998 * 120.00239 * 180.02562 * 19 18 17 33 33 H 1.08003 * 120.75714 * 180.02562 * 21 20 18 34 34 H 1.07999 * 120.35646 * 359.95302 * 23 13 12 35 35 H 1.08003 * 119.79934 * 180.28777 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.0959 1.6962 -1.2125 5 1 1.2771 2.7465 -0.0006 6 1 3.0957 1.6964 1.2125 7 6 2.0080 -1.2125 0.0005 8 1 3.0499 -1.2344 0.2842 9 6 1.3527 -2.4051 -0.3691 10 6 0.2053 -2.3684 -1.1934 11 6 -0.3947 -3.5495 -1.5251 12 6 0.1384 -4.7513 -1.0447 13 6 -0.5110 -6.0297 -1.4043 14 6 -1.5895 -6.0354 -2.3068 15 6 -2.2037 -7.1962 -2.6533 16 6 -1.7660 -8.4127 -2.1035 17 7 -2.3488 -9.5760 -2.4159 18 6 -1.9148 -10.7019 -1.8823 19 7 -2.5417 -11.8843 -2.2279 20 7 -0.8978 -10.7453 -1.0233 21 6 -0.2545 -9.6550 -0.6627 22 6 -0.6753 -8.4198 -1.1946 23 6 -0.0522 -7.2157 -0.8485 24 7 1.2171 -4.7617 -0.2656 25 6 1.8321 -3.6538 0.0762 26 1 -0.4850 0.8400 -0.0004 27 1 -0.1880 -1.4288 -1.5521 28 1 -1.2734 -3.5562 -2.1529 29 1 -1.9342 -5.1036 -2.7303 30 1 -3.0309 -7.1835 -3.3474 31 1 -3.2847 -11.8750 -2.8516 32 1 -2.2388 -12.7233 -1.8469 33 1 0.5688 -9.7045 0.0346 34 1 0.7764 -7.2092 -0.1559 35 1 2.7081 -3.6986 0.7063 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243989163.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:08 Heat of formation + Delta-G solvation = 75.967319 kcal Electronic energy + Delta-G solvation = -20979.858508 eV Core-core repulsion = 17748.339403 eV Total energy + Delta-G solvation = -3231.519105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.102 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.11750 -40.37046 -38.59796 -36.10839 -35.51962 -34.65464 -32.73345 -32.35363 -31.80028 -29.97143 -27.17668 -25.94375 -24.63044 -23.98840 -22.79218 -22.42246 -19.82546 -19.34745 -19.19765 -18.01682 -17.39672 -16.81896 -16.63582 -16.14814 -16.02441 -15.81801 -15.55387 -15.12379 -14.71137 -14.52334 -14.50474 -13.85946 -13.54509 -13.44576 -13.21196 -13.12062 -12.76414 -12.54847 -12.27319 -12.21740 -11.91081 -11.66391 -11.36080 -11.02767 -10.23141 -10.15285 -9.94205 -9.85874 -9.65608 -8.80839 -8.48275 -6.40471 -0.63637 -0.21951 0.72339 1.04087 1.15210 1.40200 1.50953 1.54354 2.14143 2.17945 2.24812 2.74508 3.20654 3.21898 3.56890 3.70701 3.74763 3.79152 3.99280 4.23121 4.26543 4.48329 4.61441 4.75670 4.77070 4.83424 5.00003 5.11655 5.15510 5.21222 5.32928 5.36978 5.63306 5.72128 5.84501 5.92781 6.00693 6.04585 6.37311 6.44607 6.46431 6.67760 6.75544 7.45416 7.68203 8.15085 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.050339 B = 0.002924 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.096883 B = 9574.027936 C =10040.885854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.035 3.965 3 Si 0.989 3.011 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.463 4.463 8 H 0.092 0.908 9 C 0.041 3.959 10 C -0.163 4.163 11 C -0.127 4.127 12 C -0.009 4.009 13 C -0.036 4.036 14 C -0.060 4.060 15 C -0.125 4.125 16 C 0.178 3.822 17 N -0.590 5.590 18 C 0.544 3.456 19 N -0.806 5.806 20 N -0.573 5.573 21 C 0.244 3.756 22 C -0.213 4.213 23 C -0.054 4.054 24 N -0.457 5.457 25 C -0.035 4.035 26 H 0.296 0.704 27 H 0.118 0.882 28 H 0.130 0.870 29 H 0.145 0.855 30 H 0.152 0.848 31 H 0.421 0.579 32 H 0.422 0.578 33 H 0.210 0.790 34 H 0.141 0.859 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.326 -11.612 -3.355 12.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.183 4.183 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.491 4.491 8 H 0.110 0.890 9 C 0.037 3.963 10 C -0.189 4.189 11 C -0.147 4.147 12 C -0.143 4.143 13 C -0.038 4.038 14 C -0.082 4.082 15 C -0.144 4.144 16 C 0.049 3.951 17 N -0.317 5.317 18 C 0.184 3.816 19 N -0.356 5.356 20 N -0.293 5.293 21 C 0.062 3.938 22 C -0.220 4.220 23 C -0.075 4.075 24 N -0.164 5.164 25 C -0.199 4.199 26 H 0.107 0.893 27 H 0.136 0.864 28 H 0.147 0.853 29 H 0.163 0.837 30 H 0.169 0.831 31 H 0.253 0.747 32 H 0.255 0.745 33 H 0.226 0.774 34 H 0.159 0.841 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.840 -13.132 -3.392 14.096 hybrid contribution 0.157 2.191 -0.036 2.197 sum -3.683 -10.941 -3.428 12.042 Atomic orbital electron populations 1.69810 1.09280 1.31635 1.32222 1.26937 0.95533 1.04995 0.90874 0.85126 0.78758 0.74847 0.80379 1.18269 1.19138 1.17990 1.19930 0.98833 0.91802 1.38561 0.89009 1.18920 0.92774 0.94536 0.90093 1.21386 0.99340 0.97497 1.00631 1.21593 0.99974 0.92794 1.00299 1.19198 0.97496 0.91860 1.05773 1.18645 0.95890 0.91652 0.97575 1.21206 0.93291 0.99020 0.94658 1.20585 1.02208 0.89205 1.02431 1.18879 0.91208 0.92224 0.92751 1.68191 1.34191 0.97558 1.31744 1.19675 0.87095 0.87704 0.87176 1.41633 1.38069 1.04232 1.51715 1.67801 1.10810 1.33194 1.17485 1.24018 0.93891 0.84796 0.91051 1.19448 1.01456 0.96611 1.04444 1.21221 0.98572 0.89588 0.98157 1.66944 1.07268 1.31956 1.10275 1.22653 1.03396 0.87830 1.06010 0.89284 0.86409 0.85276 0.83693 0.83079 0.74653 0.74496 0.77384 0.84145 0.84205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.46 10.92 21.84 0.24 -38.22 16 2 C 0.03 1.59 5.17 85.28 0.44 2.03 16 3 Si 0.99 34.29 29.59 68.60 2.03 36.32 16 4 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 5 H -0.27 -8.80 7.11 99.48 0.71 -8.09 16 6 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 7 C -0.46 -22.75 9.06 23.38 0.21 -22.54 16 8 H 0.09 4.23 7.91 -2.91 -0.02 4.21 16 9 C 0.04 2.11 5.59 -21.17 -0.12 1.99 16 10 C -0.16 -8.10 8.74 22.64 0.20 -7.90 16 11 C -0.13 -5.63 9.37 22.30 0.21 -5.42 16 12 C -0.01 -0.38 6.73 41.92 0.28 -0.10 16 13 C -0.04 -1.35 5.87 -20.03 -0.12 -1.47 16 14 C -0.06 -1.92 9.31 22.29 0.21 -1.71 16 15 C -0.12 -3.73 9.97 22.26 0.22 -3.51 16 16 C 0.18 5.72 6.62 40.32 0.27 5.98 16 17 N -0.59 -17.95 10.45 -191.51 -2.00 -19.95 16 18 C 0.54 14.57 8.63 261.51 2.26 16.82 16 19 N -0.81 -14.09 9.06 -59.78 -0.54 -14.63 16 20 N -0.57 -15.15 10.40 -196.59 -2.04 -17.20 16 21 C 0.24 6.24 11.15 85.38 0.95 7.19 16 22 C -0.21 -6.59 5.74 -21.29 -0.12 -6.72 16 23 C -0.05 -1.82 9.35 22.81 0.21 -1.61 16 24 N -0.46 -21.42 9.36 -182.74 -1.71 -23.13 16 25 C -0.03 -1.69 10.97 85.45 0.94 -0.75 16 26 H 0.30 12.66 8.30 -92.71 -0.77 11.89 16 27 H 0.12 5.94 6.19 -2.91 -0.02 5.92 16 28 H 0.13 4.84 6.13 -2.91 -0.02 4.82 16 29 H 0.15 4.10 6.11 -2.91 -0.02 4.08 16 30 H 0.15 3.81 8.06 -2.91 -0.02 3.78 16 31 H 0.42 5.86 8.93 -92.71 -0.83 5.03 16 32 H 0.42 5.39 8.94 -92.71 -0.83 4.56 16 33 H 0.21 3.69 8.06 -2.91 -0.02 3.66 16 34 H 0.14 4.68 7.50 -2.91 -0.02 4.65 16 35 H 0.14 6.22 8.06 -2.91 -0.02 6.20 16 Total: -1.00 -61.31 307.55 1.54 -59.77 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: -0.47 Total: 34.74 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: 6.04 Total: -17.71 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -6.06 Total: -113.12 kcal Atomic # 14 Polarization: 34.29 SS G_CDS: 2.03 Total: 36.32 kcal Total: -61.31 1.54 -59.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243989163.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.740 kcal (2) G-P(sol) polarization free energy of solvation -61.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds