Wall clock time and date at job start Tue Mar 31 2020 06:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86797 * 120.00288 * 2 1 4 4 H 1.48491 * 109.47360 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47040 * 300.00022 * 3 2 1 6 6 H 1.48502 * 109.47318 * 59.99613 * 3 2 1 7 7 C 1.39934 * 119.99754 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99679 * 197.56301 * 7 2 1 9 9 C 1.41441 * 120.00118 * 17.55765 * 7 2 1 10 10 C 1.40806 * 120.60768 * 203.51299 * 9 7 2 11 11 N 1.31496 * 120.67098 * 179.97438 * 10 9 7 12 12 C 1.31936 * 122.12228 * 359.74220 * 11 10 9 13 13 C 1.39691 * 121.14878 * 0.54981 * 12 11 10 14 14 C 1.48369 * 120.41143 * 179.71917 * 13 12 11 15 15 C 1.40379 * 119.72852 * 179.74547 * 14 13 12 16 16 C 1.35946 * 120.94844 * 179.97438 * 15 14 13 17 17 C 1.40369 * 119.91599 * 359.96154 * 16 15 14 18 18 N 1.33891 * 121.74874 * 179.97438 * 17 16 15 19 19 C 1.31878 * 120.25589 * 180.02562 * 18 17 16 20 20 N 1.38305 * 118.66955 * 180.28188 * 19 18 17 21 21 N 1.33194 * 122.65624 * 0.02562 * 19 18 17 22 22 C 1.31627 * 121.53419 * 359.97438 * 21 19 18 23 23 C 1.40834 * 118.48927 * 0.02562 * 22 21 19 24 24 C 1.38347 * 119.73319 * 359.72246 * 14 13 12 25 25 C 1.39195 * 119.17242 * 359.44724 * 13 12 11 26 26 H 0.96996 * 119.99670 * 359.97438 * 1 2 3 27 27 H 1.08007 * 119.66080 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.42146 * 180.28846 * 12 11 10 29 29 H 1.07995 * 119.52791 * 359.97438 * 15 14 13 30 30 H 1.08007 * 120.04545 * 180.02562 * 16 15 14 31 31 H 0.96998 * 120.00082 * 179.73052 * 20 19 18 32 32 H 0.96998 * 120.00410 * 359.73318 * 20 19 18 33 33 H 1.08004 * 120.75569 * 179.97438 * 22 21 19 34 34 H 1.08000 * 120.34365 * 0.02562 * 24 14 13 35 35 H 1.08006 * 120.95520 * 180.29565 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8837 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0502 -1.2336 0.2828 9 6 1.3502 -2.4084 -0.3684 10 6 1.8304 -3.6562 0.0734 11 7 1.2195 -4.7693 -0.2684 12 6 0.1398 -4.7726 -1.0267 13 6 -0.4035 -3.5822 -1.5157 14 6 -1.6147 -3.6054 -2.3722 15 6 -2.1517 -2.4002 -2.8514 16 6 -3.2602 -2.3926 -3.6383 17 6 -3.8828 -3.6027 -3.9822 18 7 -4.9762 -3.6380 -4.7543 19 6 -5.5377 -4.7918 -5.0588 20 7 -6.6625 -4.7904 -5.8635 21 7 -5.0624 -5.9586 -4.6268 22 6 -3.9925 -6.0258 -3.8630 23 6 -3.3476 -4.8267 -3.5031 24 6 -2.2055 -4.8147 -2.6925 25 6 0.2025 -2.3735 -1.1846 26 1 -0.4849 0.8400 0.0004 27 1 2.7094 -3.6993 0.6995 28 1 -0.3298 -5.7124 -1.2771 29 1 -1.6773 -1.4655 -2.5913 30 1 -3.6608 -1.4568 -3.9993 31 1 -7.0888 -5.6282 -6.1027 32 1 -7.0252 -3.9516 -6.1887 33 1 -3.6181 -6.9789 -3.5194 34 1 -1.7897 -5.7401 -2.3221 35 1 -0.1961 -1.4358 -1.5429 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243989930.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:12 Heat of formation + Delta-G solvation = 91.440523 kcal Electronic energy + Delta-G solvation = -21310.140000 eV Core-core repulsion = 18079.291863 eV Total energy + Delta-G solvation = -3230.848137 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.102 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.05021 -38.77798 -37.35820 -34.55985 -34.23762 -33.74481 -31.27479 -30.95853 -30.34677 -27.76764 -25.84478 -24.71404 -23.61705 -22.55564 -21.32349 -20.82267 -18.69788 -18.21622 -17.29463 -16.46018 -16.10589 -15.65073 -15.20425 -15.10163 -15.07183 -14.59974 -13.87671 -13.81425 -13.53440 -13.09331 -12.82815 -12.48340 -12.15503 -11.81908 -11.69056 -11.45014 -11.31332 -11.16337 -10.89969 -10.83636 -10.62828 -10.21404 -9.96236 -9.48678 -9.02786 -8.75891 -8.50806 -8.20865 -7.91710 -7.11346 -6.92446 -4.60743 0.45827 0.98807 2.03664 2.50918 2.73823 2.97283 3.01990 3.09698 3.15171 3.50962 3.77386 4.22848 4.32361 4.54132 4.61582 4.86668 4.93903 5.23358 5.43221 5.47624 5.55321 5.78445 5.86257 6.00256 6.16559 6.30616 6.42488 6.44296 6.58772 6.65178 6.92516 6.94097 6.97196 7.03312 7.12721 7.19909 7.43240 7.54762 7.72457 7.79172 8.29494 8.43645 8.55063 8.57906 9.50092 9.94122 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022995 B = 0.003853 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.380792 B = 7265.617170 C = 8405.151983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.447 4.447 8 H 0.085 0.915 9 C 0.061 3.939 10 C -0.014 4.014 11 N -0.469 5.469 12 C -0.024 4.024 13 C -0.094 4.094 14 C -0.024 4.024 15 C -0.049 4.049 16 C -0.127 4.127 17 C 0.198 3.802 18 N -0.570 5.570 19 C 0.554 3.446 20 N -0.827 5.827 21 N -0.569 5.569 22 C 0.235 3.765 23 C -0.200 4.200 24 C -0.073 4.073 25 C -0.117 4.117 26 H 0.284 0.716 27 H 0.127 0.873 28 H 0.123 0.877 29 H 0.140 0.860 30 H 0.133 0.867 31 H 0.410 0.590 32 H 0.412 0.588 33 H 0.176 0.824 34 H 0.137 0.863 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.540 -3.901 -7.823 12.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.477 4.477 8 H 0.103 0.897 9 C 0.057 3.943 10 C -0.176 4.176 11 N -0.176 5.176 12 C -0.182 4.182 13 C -0.096 4.096 14 C -0.026 4.026 15 C -0.070 4.070 16 C -0.147 4.147 17 C 0.069 3.931 18 N -0.296 5.296 19 C 0.195 3.805 20 N -0.376 5.376 21 N -0.288 5.288 22 C 0.054 3.946 23 C -0.206 4.206 24 C -0.093 4.093 25 C -0.143 4.143 26 H 0.095 0.905 27 H 0.145 0.855 28 H 0.140 0.860 29 H 0.157 0.843 30 H 0.151 0.849 31 H 0.241 0.759 32 H 0.242 0.758 33 H 0.193 0.807 34 H 0.154 0.846 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.284 -4.401 -8.135 13.105 hybrid contribution 0.302 1.664 0.070 1.693 sum -8.982 -2.737 -8.065 12.378 Atomic orbital electron populations 1.69783 1.07691 1.29714 1.34197 1.25979 0.94813 1.01688 0.91946 0.86188 0.81041 0.80423 0.78780 1.18179 1.19508 1.19788 1.19610 0.98267 0.90749 1.39051 0.89686 1.18477 0.92115 0.93785 0.89971 1.22572 1.02460 0.88016 1.04514 1.66945 1.07733 1.31962 1.10920 1.21766 0.96918 0.95304 1.04238 1.19397 0.94946 0.95670 0.99603 1.18960 0.94953 0.92320 0.96326 1.21307 0.93730 0.99027 0.92984 1.20495 0.96799 0.96301 1.01057 1.18591 0.89889 0.93109 0.91466 1.68185 1.13330 1.26944 1.21131 1.19232 0.87963 0.84774 0.88552 1.41639 1.28748 1.12300 1.54958 1.67644 1.16018 1.28301 1.16865 1.23423 0.86812 0.97682 0.86709 1.19282 1.00670 0.95324 1.05313 1.21153 0.93422 0.98502 0.96217 1.21848 0.97834 0.96055 0.98532 0.90462 0.85500 0.85986 0.84253 0.84872 0.75928 0.75756 0.80719 0.84570 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.59 10.92 55.55 0.61 -17.99 16 2 C 0.07 1.72 5.18 -17.34 -0.09 1.63 16 3 Si 0.91 17.23 29.59 -169.99 -5.03 12.20 16 4 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 5 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 6 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.45 -10.91 9.08 -37.73 -0.34 -11.25 16 8 H 0.09 1.98 7.90 -52.49 -0.41 1.56 16 9 C 0.06 1.52 5.59 -106.71 -0.60 0.92 16 10 C -0.01 -0.35 10.96 -16.73 -0.18 -0.53 16 11 N -0.47 -11.05 10.32 -12.28 -0.13 -11.17 16 12 C -0.02 -0.53 10.58 -16.96 -0.18 -0.71 16 13 C -0.09 -2.03 5.88 -104.83 -0.62 -2.65 16 14 C -0.02 -0.45 5.87 -104.88 -0.62 -1.06 16 15 C -0.05 -0.86 9.34 -39.60 -0.37 -1.23 16 16 C -0.13 -2.06 9.98 -39.60 -0.40 -2.45 16 17 C 0.20 3.30 6.62 -84.76 -0.56 2.74 16 18 N -0.57 -9.16 10.45 -11.91 -0.12 -9.29 16 19 C 0.55 7.90 8.63 -322.83 -2.79 5.12 16 20 N -0.83 -8.19 9.06 29.76 0.27 -7.92 16 21 N -0.57 -7.90 10.40 -13.50 -0.14 -8.04 16 22 C 0.23 3.05 11.15 -16.66 -0.19 2.87 16 23 C -0.20 -3.06 5.74 -106.83 -0.61 -3.68 16 24 C -0.07 -1.15 9.21 -38.86 -0.36 -1.50 16 25 C -0.12 -2.79 8.16 -38.23 -0.31 -3.10 16 26 H 0.28 6.06 8.30 -40.82 -0.34 5.73 16 27 H 0.13 2.82 8.06 -52.48 -0.42 2.40 16 28 H 0.12 2.25 6.17 -52.49 -0.32 1.93 16 29 H 0.14 2.46 6.20 -52.49 -0.33 2.13 16 30 H 0.13 1.93 8.06 -52.48 -0.42 1.51 16 31 H 0.41 3.12 8.94 -40.82 -0.36 2.76 16 32 H 0.41 3.39 8.93 -40.82 -0.36 3.02 16 33 H 0.18 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.14 1.85 6.17 -52.49 -0.32 1.53 16 35 H 0.13 3.15 4.39 -52.48 -0.23 2.92 16 LS Contribution 305.21 15.07 4.60 4.60 Total: -1.00 -28.78 305.21 -10.90 -39.68 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -2.75 Total: 12.83 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -8.21 Total: -14.90 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.48 Total: -54.41 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.20 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.78 -10.90 -39.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243989930.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.123 kcal (2) G-P(sol) polarization free energy of solvation -28.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds