Wall clock time and date at job start Tue Mar 31 2020 06:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86797 * 120.00288 * 2 1 4 4 H 1.48491 * 109.47360 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47040 * 300.00022 * 3 2 1 6 6 H 1.48502 * 109.47318 * 59.99613 * 3 2 1 7 7 C 1.39934 * 119.99754 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99679 * 197.56301 * 7 2 1 9 9 C 1.41441 * 120.00118 * 17.55765 * 7 2 1 10 10 C 1.40806 * 120.60768 * 203.51299 * 9 7 2 11 11 N 1.31496 * 120.67098 * 179.97438 * 10 9 7 12 12 C 1.31936 * 122.12228 * 359.74220 * 11 10 9 13 13 C 1.39691 * 121.14878 * 0.54981 * 12 11 10 14 14 C 1.48369 * 120.41143 * 179.71917 * 13 12 11 15 15 C 1.40379 * 119.72852 * 179.74547 * 14 13 12 16 16 C 1.35946 * 120.94844 * 179.97438 * 15 14 13 17 17 C 1.40369 * 119.91599 * 359.96154 * 16 15 14 18 18 N 1.33891 * 121.74874 * 179.97438 * 17 16 15 19 19 C 1.31878 * 120.25589 * 180.02562 * 18 17 16 20 20 N 1.38305 * 118.66955 * 180.28188 * 19 18 17 21 21 N 1.33194 * 122.65624 * 0.02562 * 19 18 17 22 22 C 1.31627 * 121.53419 * 359.97438 * 21 19 18 23 23 C 1.40834 * 118.48927 * 0.02562 * 22 21 19 24 24 C 1.38347 * 119.73319 * 359.72246 * 14 13 12 25 25 C 1.39195 * 119.17242 * 359.44724 * 13 12 11 26 26 H 0.96996 * 119.99670 * 359.97438 * 1 2 3 27 27 H 1.08007 * 119.66080 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.42146 * 180.28846 * 12 11 10 29 29 H 1.07995 * 119.52791 * 359.97438 * 15 14 13 30 30 H 1.08007 * 120.04545 * 180.02562 * 16 15 14 31 31 H 0.96998 * 120.00082 * 179.73052 * 20 19 18 32 32 H 0.96998 * 120.00410 * 359.73318 * 20 19 18 33 33 H 1.08004 * 120.75569 * 179.97438 * 22 21 19 34 34 H 1.08000 * 120.34365 * 0.02562 * 24 14 13 35 35 H 1.08006 * 120.95520 * 180.29565 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8837 2.3964 -1.2125 6 1 1.8837 2.3965 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0502 -1.2336 0.2828 9 6 1.3502 -2.4084 -0.3684 10 6 1.8304 -3.6562 0.0734 11 7 1.2195 -4.7693 -0.2684 12 6 0.1398 -4.7726 -1.0267 13 6 -0.4035 -3.5822 -1.5157 14 6 -1.6147 -3.6054 -2.3722 15 6 -2.1517 -2.4002 -2.8514 16 6 -3.2602 -2.3926 -3.6383 17 6 -3.8828 -3.6027 -3.9822 18 7 -4.9762 -3.6380 -4.7543 19 6 -5.5377 -4.7918 -5.0588 20 7 -6.6625 -4.7904 -5.8635 21 7 -5.0624 -5.9586 -4.6268 22 6 -3.9925 -6.0258 -3.8630 23 6 -3.3476 -4.8267 -3.5031 24 6 -2.2055 -4.8147 -2.6925 25 6 0.2025 -2.3735 -1.1846 26 1 -0.4849 0.8400 0.0004 27 1 2.7094 -3.6993 0.6995 28 1 -0.3298 -5.7124 -1.2771 29 1 -1.6773 -1.4655 -2.5913 30 1 -3.6608 -1.4568 -3.9993 31 1 -7.0888 -5.6282 -6.1027 32 1 -7.0252 -3.9516 -6.1887 33 1 -3.6181 -6.9789 -3.5194 34 1 -1.7897 -5.7401 -2.3221 35 1 -0.1961 -1.4358 -1.5429 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243989930.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:11 Heat of formation + Delta-G solvation = 75.661536 kcal Electronic energy + Delta-G solvation = -21310.824228 eV Core-core repulsion = 18079.291863 eV Total energy + Delta-G solvation = -3231.532365 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.19934 -40.38184 -38.69788 -35.97119 -35.59915 -34.98616 -32.71455 -32.36031 -31.92572 -29.14146 -27.57889 -25.92127 -24.94820 -23.99193 -22.82678 -22.37099 -19.85451 -19.55002 -18.75941 -17.86511 -17.56498 -16.90993 -16.68715 -16.49064 -16.19301 -15.94896 -15.32382 -15.10364 -14.77855 -14.52511 -14.43093 -13.99214 -13.55733 -13.34490 -13.27170 -13.10625 -12.87851 -12.42464 -12.26955 -12.15402 -12.06847 -11.62953 -11.46134 -11.19793 -10.16047 -10.09369 -9.93032 -9.91575 -9.63355 -8.72443 -8.40813 -6.44264 -0.69525 -0.30081 0.70302 0.97585 1.14443 1.40933 1.51299 1.55781 2.16239 2.19367 2.20723 2.74894 3.16631 3.17021 3.50816 3.64600 3.76597 3.79262 3.98354 4.10207 4.20279 4.35941 4.61699 4.68421 4.72496 4.83288 4.87248 5.08204 5.12733 5.20227 5.29249 5.36029 5.50508 5.69803 5.86712 5.91424 5.95116 6.05187 6.34423 6.39681 6.50408 6.76343 6.78611 7.41922 7.70962 8.24149 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022995 B = 0.003853 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.380792 B = 7265.617170 C = 8405.151983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.039 3.961 3 Si 0.983 3.017 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.480 4.480 8 H 0.085 0.915 9 C 0.036 3.964 10 C -0.040 4.040 11 N -0.479 5.479 12 C -0.030 4.030 13 C -0.084 4.084 14 C -0.063 4.063 15 C -0.055 4.055 16 C -0.131 4.131 17 C 0.188 3.812 18 N -0.597 5.597 19 C 0.550 3.450 20 N -0.806 5.806 21 N -0.574 5.574 22 C 0.253 3.747 23 C -0.217 4.217 24 C -0.041 4.041 25 C -0.143 4.143 26 H 0.292 0.708 27 H 0.133 0.867 28 H 0.160 0.840 29 H 0.125 0.875 30 H 0.142 0.858 31 H 0.423 0.577 32 H 0.421 0.579 33 H 0.221 0.779 34 H 0.164 0.836 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.110 -5.284 -9.008 14.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.178 4.178 3 Si 0.804 3.196 4 H -0.180 1.180 5 H -0.188 1.188 6 H -0.191 1.191 7 C -0.509 4.509 8 H 0.103 0.897 9 C 0.032 3.968 10 C -0.200 4.200 11 N -0.186 5.186 12 C -0.188 4.188 13 C -0.086 4.086 14 C -0.065 4.065 15 C -0.076 4.076 16 C -0.151 4.151 17 C 0.060 3.940 18 N -0.325 5.325 19 C 0.190 3.810 20 N -0.356 5.356 21 N -0.293 5.293 22 C 0.072 3.928 23 C -0.224 4.224 24 C -0.061 4.061 25 C -0.168 4.168 26 H 0.103 0.897 27 H 0.151 0.849 28 H 0.177 0.823 29 H 0.143 0.857 30 H 0.160 0.840 31 H 0.256 0.744 32 H 0.253 0.747 33 H 0.238 0.762 34 H 0.181 0.819 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.897 -5.801 -9.348 15.485 hybrid contribution 0.512 1.906 0.276 1.992 sum -10.385 -3.896 -9.072 14.329 Atomic orbital electron populations 1.69825 1.08948 1.30992 1.34324 1.26764 0.95512 1.04515 0.90994 0.85129 0.79533 0.76001 0.78974 1.18042 1.18838 1.19129 1.19847 0.98553 0.91766 1.40740 0.89724 1.18797 0.92939 0.94445 0.90595 1.22693 1.03370 0.88198 1.05732 1.66968 1.08489 1.31686 1.11451 1.22373 0.96367 0.96785 1.03319 1.19647 0.95397 0.94845 0.98745 1.18843 0.95254 0.93862 0.98539 1.21168 0.94305 0.98433 0.93701 1.20540 0.96465 0.97110 1.00957 1.18797 0.90162 0.93643 0.91421 1.68210 1.13902 1.27888 1.22456 1.19686 0.88424 0.84661 0.88210 1.41698 1.27120 1.13678 1.53067 1.67832 1.16417 1.27737 1.17305 1.24157 0.85492 0.98440 0.84724 1.19435 1.00986 0.96001 1.05944 1.21377 0.92354 0.98308 0.94026 1.21898 0.98434 0.96905 0.99591 0.89688 0.84934 0.82343 0.85693 0.83982 0.74361 0.74690 0.76227 0.81871 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.73 10.92 21.82 0.24 -39.49 16 2 C 0.04 1.82 5.18 85.25 0.44 2.26 16 3 Si 0.98 35.85 29.59 68.60 2.03 37.88 16 4 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 5 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 6 H -0.27 -9.39 7.11 99.48 0.71 -8.68 16 7 C -0.48 -24.41 9.08 23.47 0.21 -24.19 16 8 H 0.08 4.13 7.90 -2.91 -0.02 4.10 16 9 C 0.04 1.90 5.59 -21.22 -0.12 1.78 16 10 C -0.04 -1.98 10.96 85.37 0.94 -1.04 16 11 N -0.48 -22.69 10.32 -192.76 -1.99 -24.68 16 12 C -0.03 -1.29 10.58 85.03 0.90 -0.39 16 13 C -0.08 -3.68 5.88 -20.00 -0.12 -3.80 16 14 C -0.06 -2.32 5.87 -20.03 -0.12 -2.44 16 15 C -0.05 -1.97 9.34 22.26 0.21 -1.76 16 16 C -0.13 -4.26 9.98 22.26 0.22 -4.04 16 17 C 0.19 5.99 6.62 40.26 0.27 6.26 16 18 N -0.60 -18.10 10.45 -191.58 -2.00 -20.10 16 19 C 0.55 14.13 8.63 261.50 2.26 16.38 16 20 N -0.81 -13.54 9.06 -59.76 -0.54 -14.08 16 21 N -0.57 -13.78 10.40 -196.63 -2.04 -15.83 16 22 C 0.25 5.52 11.15 85.36 0.95 6.47 16 23 C -0.22 -6.07 5.74 -21.29 -0.12 -6.19 16 24 C -0.04 -1.18 9.21 22.74 0.21 -0.97 16 25 C -0.14 -7.07 8.16 23.15 0.19 -6.88 16 26 H 0.29 12.79 8.30 -92.71 -0.77 12.02 16 27 H 0.13 6.17 8.06 -2.91 -0.02 6.15 16 28 H 0.16 5.39 6.17 -2.91 -0.02 5.37 16 29 H 0.13 4.72 6.20 -2.91 -0.02 4.70 16 30 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 31 H 0.42 5.00 8.94 -92.71 -0.83 4.18 16 32 H 0.42 5.78 8.93 -92.71 -0.83 4.95 16 33 H 0.22 2.65 8.06 -2.91 -0.02 2.63 16 34 H 0.16 3.74 6.17 -2.91 -0.02 3.72 16 35 H 0.13 6.29 4.39 -2.91 -0.01 6.28 16 Total: -1.00 -63.91 305.21 1.54 -62.37 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: -0.47 Total: 32.49 kcal Atomic # 6 Polarization: -24.88 SS G_CDS: 6.32 Total: -18.56 kcal Atomic # 7 Polarization: -107.84 SS G_CDS: -6.34 Total: -114.18 kcal Atomic # 14 Polarization: 35.85 SS G_CDS: 2.03 Total: 37.88 kcal Total: -63.91 1.54 -62.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243989930.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.029 kcal (2) G-P(sol) polarization free energy of solvation -63.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds