Wall clock time and date at job start Tue Mar 31 2020 06:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30700 * 1 3 3 Si 1.86803 * 119.99728 * 2 1 4 4 H 1.48492 * 109.47152 * 275.33575 * 3 2 1 5 5 H 1.48506 * 109.46939 * 35.33483 * 3 2 1 6 6 H 1.48498 * 109.46950 * 155.33115 * 3 2 1 7 7 C 1.40152 * 120.00610 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99604 * 342.01501 * 7 2 1 9 9 C 1.40860 * 120.00408 * 162.01709 * 7 2 1 10 10 C 1.41142 * 121.11019 * 330.48626 * 9 7 2 11 11 C 1.36433 * 119.11147 * 180.02562 * 10 9 7 12 12 N 1.32244 * 121.53117 * 0.02562 * 11 10 9 13 13 C 1.31634 * 122.51597 * 359.65799 * 12 11 10 14 14 C 1.39401 * 120.64447 * 0.63908 * 13 12 11 15 15 C 1.47714 * 120.79199 * 179.68337 * 14 13 12 16 16 C 1.40680 * 119.77589 * 129.71369 * 15 14 13 17 17 C 1.35798 * 120.92239 * 180.02562 * 16 15 14 18 18 C 1.40521 * 119.97154 * 0.02562 * 17 16 15 19 19 N 1.33789 * 121.71204 * 180.02562 * 18 17 16 20 20 C 1.31944 * 120.27849 * 180.02562 * 19 18 17 21 21 N 1.38237 * 118.66035 * 180.27808 * 20 19 18 22 22 N 1.33189 * 122.67508 * 359.97438 * 20 19 18 23 23 C 1.31624 * 121.52169 * 0.02562 * 22 20 19 24 24 C 1.40917 * 118.47590 * 0.02562 * 23 22 20 25 25 C 1.38867 * 119.77020 * 309.73980 * 15 14 13 26 26 H 0.96997 * 120.00159 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.44334 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.23355 * 180.02562 * 11 10 9 29 29 H 1.08000 * 119.67779 * 180.34154 * 13 12 11 30 30 H 1.07999 * 119.53960 * 0.03253 * 16 15 14 31 31 H 1.07998 * 120.01450 * 180.02562 * 17 16 15 32 32 H 0.96999 * 119.99753 * 179.73120 * 21 20 19 33 33 H 0.96993 * 119.99823 * 359.73397 * 21 20 19 34 34 H 1.07999 * 120.76636 * 179.97438 * 23 22 20 35 35 H 1.07995 * 120.35521 * 0.02562 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.3757 2.1116 -1.3939 5 1 1.4992 2.6175 0.8098 6 1 3.5903 1.4104 0.5844 7 6 2.0079 -1.2137 0.0005 8 1 1.5075 -2.1261 0.2898 9 6 3.3649 -1.2436 -0.3760 10 6 3.8860 -0.3126 -1.3000 11 6 5.2066 -0.3791 -1.6362 12 7 6.0071 -1.2949 -1.1171 13 6 5.5886 -2.1888 -0.2462 14 6 4.2558 -2.2139 0.1615 15 6 3.7812 -3.2200 1.1334 16 6 3.0426 -2.8104 2.2585 17 6 2.5954 -3.7153 3.1669 18 6 2.8695 -5.0821 2.9897 19 7 2.4456 -6.0033 3.8624 20 6 2.7196 -7.2793 3.6685 21 7 2.2602 -8.2033 4.5883 22 7 3.4159 -7.7139 2.6196 23 6 3.8754 -6.8841 1.7071 24 6 3.6160 -5.5074 1.8592 25 6 4.0677 -4.5635 0.9305 26 1 -0.4850 0.8400 0.0004 27 1 3.2477 0.4419 -1.7357 28 1 5.6075 0.3326 -2.3428 29 1 6.2836 -2.9127 0.1528 30 1 2.8281 -1.7617 2.4017 31 1 2.0292 -3.3847 4.0251 32 1 2.4471 -9.1468 4.4628 33 1 1.7508 -7.9082 5.3592 34 1 4.4391 -7.2498 0.8615 35 1 4.6356 -4.8761 0.0668 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243995750.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:17 Heat of formation + Delta-G solvation = 92.221434 kcal Electronic energy + Delta-G solvation = -21746.837613 eV Core-core repulsion = 18516.023339 eV Total energy + Delta-G solvation = -3230.814274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.102 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.86316 -38.94150 -37.25858 -34.47968 -34.19525 -33.57103 -31.61013 -30.79189 -30.58586 -27.91244 -26.02986 -24.62856 -23.36808 -22.43489 -21.42295 -20.87510 -18.52303 -17.96966 -17.88278 -16.58007 -15.81575 -15.70660 -15.12936 -14.94879 -14.80252 -14.40538 -14.20514 -13.96099 -13.45322 -13.26516 -12.98913 -12.68340 -12.17003 -12.09722 -11.71450 -11.27904 -11.15208 -11.01012 -10.99722 -10.81500 -10.62554 -9.98095 -9.81514 -9.52515 -8.87949 -8.53871 -8.44857 -8.19646 -8.10705 -7.25272 -7.17758 -4.86382 0.65352 1.22249 2.15198 2.45445 2.49975 2.94500 3.03970 3.13961 3.29539 3.51907 3.74741 4.36577 4.38644 4.51529 4.78977 5.04173 5.10530 5.24448 5.40592 5.54257 5.67457 5.74773 5.93100 5.97386 6.19623 6.32517 6.37099 6.47155 6.58839 6.63369 6.78716 6.91765 6.97587 7.11209 7.17087 7.21056 7.33490 7.49485 7.61331 7.78009 8.04253 8.28482 8.45716 8.59103 9.25081 9.73980 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020668 B = 0.004788 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.414622 B = 5846.937642 C = 6851.486917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.086 3.914 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.243 1.243 7 C -0.424 4.424 8 H 0.100 0.900 9 C 0.122 3.878 10 C -0.281 4.281 11 C 0.115 3.885 12 N -0.579 5.579 13 C 0.141 3.859 14 C -0.224 4.224 15 C 0.007 3.993 16 C -0.030 4.030 17 C -0.134 4.134 18 C 0.198 3.802 19 N -0.570 5.570 20 C 0.550 3.450 21 N -0.829 5.829 22 N -0.571 5.571 23 C 0.229 3.771 24 C -0.197 4.197 25 C -0.087 4.087 26 H 0.291 0.709 27 H 0.109 0.891 28 H 0.124 0.876 29 H 0.129 0.871 30 H 0.138 0.862 31 H 0.130 0.870 32 H 0.409 0.591 33 H 0.411 0.589 34 H 0.173 0.827 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.305 -7.427 4.768 9.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.138 4.138 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.166 1.166 7 C -0.452 4.452 8 H 0.118 0.882 9 C 0.115 3.885 10 C -0.303 4.303 11 C -0.034 4.034 12 N -0.293 5.293 13 C -0.015 4.015 14 C -0.229 4.229 15 C 0.005 3.995 16 C -0.051 4.051 17 C -0.154 4.154 18 C 0.069 3.931 19 N -0.295 5.295 20 C 0.191 3.809 21 N -0.379 5.379 22 N -0.291 5.291 23 C 0.048 3.952 24 C -0.203 4.203 25 C -0.107 4.107 26 H 0.102 0.898 27 H 0.127 0.873 28 H 0.142 0.858 29 H 0.146 0.854 30 H 0.156 0.844 31 H 0.148 0.852 32 H 0.239 0.761 33 H 0.241 0.759 34 H 0.190 0.810 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.498 -7.927 5.266 10.139 hybrid contribution -0.753 1.117 -0.207 1.363 sum 2.746 -6.810 5.060 8.917 Atomic orbital electron populations 1.69626 1.08302 1.31030 1.31431 1.26290 0.94749 1.02047 0.90665 0.86290 0.81318 0.79378 0.79319 1.19166 1.21336 1.16632 1.19530 0.92677 0.96380 1.36661 0.88193 1.17804 0.92706 0.89341 0.88692 1.21647 0.97219 1.05944 1.05510 1.21680 0.90470 0.94891 0.96357 1.67413 1.38677 1.07859 1.15352 1.22262 0.92339 0.94718 0.92192 1.19436 0.94539 1.03727 1.05239 1.18639 0.95503 0.91961 0.93390 1.21305 0.92051 1.00570 0.91193 1.20475 1.03634 0.89854 1.01410 1.18610 0.92161 0.93380 0.88980 1.68153 1.28826 1.00056 1.32459 1.19208 0.88493 0.86258 0.86967 1.41594 1.61866 1.07705 1.26688 1.67614 1.16252 1.40512 1.04697 1.23382 0.89797 0.88083 0.93901 1.19249 1.05920 0.95759 0.99371 1.21181 1.00203 0.91560 0.97805 0.89793 0.87349 0.85845 0.85400 0.84446 0.85182 0.76065 0.75854 0.81020 0.85337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.87 13.92 55.56 0.77 -18.10 16 2 C 0.09 2.02 5.43 -17.31 -0.09 1.92 16 3 Si 0.91 18.83 24.54 -169.99 -4.17 14.66 16 4 H -0.27 -5.34 6.71 56.52 0.38 -4.96 16 5 H -0.29 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.24 -5.21 6.84 56.52 0.39 -4.82 16 7 C -0.42 -10.20 7.65 -37.87 -0.29 -10.49 16 8 H 0.10 2.58 7.09 -52.48 -0.37 2.20 16 9 C 0.12 2.82 5.12 -106.25 -0.54 2.28 16 10 C -0.28 -6.25 7.22 -39.13 -0.28 -6.53 16 11 C 0.12 2.42 11.08 -18.03 -0.20 2.22 16 12 N -0.58 -12.38 10.32 -13.35 -0.14 -12.52 16 13 C 0.14 2.85 10.69 -17.20 -0.18 2.66 16 14 C -0.22 -4.72 5.52 -104.04 -0.57 -5.30 16 15 C 0.01 0.13 5.01 -104.87 -0.53 -0.40 16 16 C -0.03 -0.56 8.05 -39.53 -0.32 -0.88 16 17 C -0.13 -2.38 9.97 -39.60 -0.39 -2.78 16 18 C 0.20 3.56 6.62 -84.71 -0.56 2.99 16 19 N -0.57 -9.91 10.45 -11.87 -0.12 -10.03 16 20 C 0.55 8.50 8.63 -322.85 -2.79 5.72 16 21 N -0.83 -9.12 9.06 29.76 0.27 -8.85 16 22 N -0.57 -8.60 10.40 -13.49 -0.14 -8.74 16 23 C 0.23 3.24 11.15 -16.63 -0.19 3.06 16 24 C -0.20 -3.25 5.74 -106.82 -0.61 -3.86 16 25 C -0.09 -1.45 9.31 -38.73 -0.36 -1.81 16 26 H 0.29 6.34 8.29 -40.82 -0.34 6.00 16 27 H 0.11 2.36 4.78 -52.49 -0.25 2.11 16 28 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 29 H 0.13 2.22 8.05 -52.49 -0.42 1.80 16 30 H 0.14 2.63 7.33 -52.49 -0.38 2.24 16 31 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 32 H 0.41 3.53 8.94 -40.82 -0.36 3.17 16 33 H 0.41 3.83 8.93 -40.82 -0.36 3.46 16 34 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.13 1.86 8.04 -52.49 -0.42 1.44 16 LS Contribution 302.16 15.07 4.55 4.55 Total: -1.00 -28.17 302.16 -9.91 -38.08 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -3.02 Total: 12.13 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -7.91 Total: -11.19 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.64 Total: -58.23 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.17 Total: 14.66 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.17 -9.91 -38.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243995750.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.302 kcal (2) G-P(sol) polarization free energy of solvation -28.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds