Wall clock time and date at job start Tue Mar 31 2020 06:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35847 * 117.00399 * 2 1 4 4 C 1.38831 * 120.13384 * 270.02416 * 3 2 1 5 5 F 1.35109 * 119.98729 * 359.97214 * 4 3 2 6 6 C 1.38301 * 120.02548 * 179.97438 * 4 3 2 7 7 C 1.38427 * 120.28460 * 0.02562 * 6 4 3 8 8 C 1.37949 * 120.26344 * 359.72838 * 7 6 4 9 9 C 1.39391 * 119.96740 * 0.52525 * 8 7 6 10 10 C 1.48305 * 120.13321 * 179.74694 * 9 8 7 11 11 N 1.30815 * 126.41570 * 179.70290 * 10 9 8 12 12 O 1.21293 * 110.08917 * 180.02562 * 11 10 9 13 13 C 1.33668 * 110.03327 * 0.02562 * 12 11 10 14 14 C 1.50704 * 126.43015 * 180.02562 * 13 12 11 15 15 C 1.53008 * 109.46934 * 270.02409 * 14 13 12 16 16 C 1.50694 * 109.46931 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00094 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99901 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00078 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 119.99858 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47254 * 89.99812 * 20 18 16 22 22 H 1.48502 * 109.46664 * 209.99640 * 20 18 16 23 23 H 1.48501 * 109.47087 * 329.99379 * 20 18 16 24 24 N 1.30970 * 107.13756 * 359.97438 * 13 12 11 25 25 H 1.08999 * 109.47111 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47176 * 299.99891 * 1 2 3 27 27 H 1.09003 * 109.46828 * 60.00222 * 1 2 3 28 28 H 1.07997 * 119.85865 * 180.02562 * 6 4 3 29 29 H 1.07992 * 119.86921 * 180.02562 * 7 6 4 30 30 H 1.07998 * 120.01269 * 180.29985 * 8 7 6 31 31 H 1.09003 * 109.47281 * 30.02165 * 14 13 12 32 32 H 1.09002 * 109.47286 * 150.02354 * 14 13 12 33 33 H 1.08998 * 109.46502 * 299.99807 * 15 14 13 34 34 H 1.08994 * 109.47388 * 59.99736 * 15 14 13 35 35 H 0.96993 * 120.00361 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 6 2.3618 1.8316 -1.2007 5 9 2.0563 1.2318 -2.3722 6 6 2.9893 3.0640 -1.1981 7 6 3.3057 3.6838 -0.0014 8 6 2.9926 3.0795 1.1985 9 6 2.3649 1.8349 1.2085 10 6 2.0317 1.1794 2.4964 11 7 1.4416 0.0220 2.6488 12 8 1.3142 -0.2286 3.8287 13 6 1.8206 0.7654 4.5652 14 6 1.8571 0.8353 6.0701 15 6 0.5836 1.5128 6.5802 16 6 0.6204 1.5832 8.0851 17 1 1.4671 1.1843 8.6238 18 6 -0.4270 2.1570 8.7742 19 7 -0.3952 2.2181 10.0875 20 14 -1.8919 2.8464 7.8424 21 1 -2.9139 1.7828 7.6698 22 1 -2.4778 3.9764 8.6073 23 1 -1.4486 3.3280 6.5094 24 7 2.2801 1.6666 3.7333 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 3.2335 3.5450 -2.1337 29 1 3.7953 4.6463 -0.0072 30 1 3.2369 3.5689 2.1298 31 1 1.9211 -0.1730 6.4793 32 1 2.7268 1.4114 6.3862 33 1 0.5197 2.5210 6.1711 34 1 -0.2860 0.9367 6.2642 35 1 -1.1321 2.6214 10.5723 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248334293.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:28 Heat of formation + Delta-G solvation = -9.518685 kcal Electronic energy + Delta-G solvation = -22439.558040 eV Core-core repulsion = 18741.270007 eV Total energy + Delta-G solvation = -3698.288032 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.06011 -46.61384 -40.99225 -38.54815 -37.11800 -36.22182 -34.47191 -32.62365 -31.58241 -31.27973 -28.11997 -28.00409 -26.00544 -24.57056 -23.41098 -23.18478 -21.97947 -19.55959 -19.16715 -18.96656 -18.60325 -17.96956 -17.71422 -17.24821 -16.36878 -16.21579 -16.09293 -15.84477 -15.73029 -15.44433 -14.99118 -14.71157 -14.39284 -13.88619 -13.66567 -13.59991 -13.36085 -13.07262 -12.90957 -12.82030 -12.56347 -12.39034 -12.19020 -11.95106 -11.78100 -11.45247 -11.28474 -11.10923 -10.76757 -9.89030 -9.84591 -8.28967 -6.33377 -0.63295 -0.15699 0.22393 1.26537 1.35996 1.38533 1.47906 1.77790 2.18967 2.25993 2.35172 2.60869 2.83319 3.06786 3.10931 3.64051 3.80745 4.00436 4.10756 4.18693 4.19829 4.25574 4.36686 4.39122 4.43810 4.58055 4.70992 4.78869 4.87354 4.90277 5.07934 5.19882 5.24517 5.36117 5.50303 5.58184 6.18942 6.23797 6.74469 7.03350 7.31205 8.86788 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024976 B = 0.003524 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.823193 B = 7943.876039 C = 8119.205575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.338 6.338 3 C 0.073 3.927 4 C 0.064 3.936 5 F -0.135 7.135 6 C -0.107 4.107 7 C -0.080 4.080 8 C -0.075 4.075 9 C -0.039 4.039 10 C 0.196 3.804 11 N -0.377 5.377 12 O 0.072 5.928 13 C 0.210 3.790 14 C -0.009 4.009 15 C -0.003 4.003 16 C -0.527 4.527 17 H 0.053 0.947 18 C 0.015 3.985 19 N -0.943 5.943 20 Si 0.938 3.062 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.255 1.255 24 N -0.492 5.492 25 H 0.112 0.888 26 H 0.031 0.969 27 H 0.059 0.941 28 H 0.182 0.818 29 H 0.188 0.812 30 H 0.151 0.849 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.021 0.979 34 H 0.023 0.977 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.738 2.449 -24.535 25.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.255 6.255 3 C 0.026 3.974 4 C 0.044 3.956 5 F -0.114 7.114 6 C -0.126 4.126 7 C -0.097 4.097 8 C -0.095 4.095 9 C -0.041 4.041 10 C -0.073 4.073 11 N -0.085 5.085 12 O 0.013 5.987 13 C -0.010 4.010 14 C -0.048 4.048 15 C -0.042 4.042 16 C -0.565 4.565 17 H 0.071 0.929 18 C -0.183 4.183 19 N -0.583 5.583 20 Si 0.762 3.238 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.179 1.179 24 N -0.225 5.225 25 H 0.130 0.870 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.200 0.800 29 H 0.205 0.795 30 H 0.168 0.832 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.040 0.960 34 H 0.042 0.958 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.633 2.144 -25.189 25.900 hybrid contribution -1.112 -0.063 0.334 1.162 sum 4.521 2.081 -24.855 25.349 Atomic orbital electron populations 1.23044 0.77049 1.04682 1.00141 1.86016 1.21573 1.23806 1.94118 1.18856 0.99905 0.87643 0.91035 1.18055 1.03818 0.93953 0.79744 1.91499 1.91415 1.83554 1.44906 1.21714 0.96753 0.91849 1.02251 1.21473 0.97699 1.01488 0.89076 1.21509 0.95050 0.91551 1.01365 1.17772 1.04535 0.95947 0.85849 1.24009 0.99098 0.90291 0.93947 1.75034 1.20253 1.17523 0.95720 1.85299 1.59548 1.41922 1.11930 1.29428 0.89796 0.82113 0.99622 1.20360 1.01906 1.05294 0.77191 1.19481 0.93440 0.96225 0.95056 1.21250 1.05646 1.38780 0.90797 0.92863 1.25792 1.01214 0.95875 0.95424 1.70017 1.33807 1.46434 1.08081 0.85849 0.79799 0.78701 0.79463 1.19213 1.20882 1.17934 1.72003 1.23983 1.27954 0.98584 0.86986 0.94992 0.92251 0.80048 0.79453 0.83153 0.86671 0.86690 0.96028 0.95849 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.07 10.55 113.37 1.20 2.26 16 2 O -0.34 -10.01 8.85 -91.83 -0.81 -10.82 16 3 C 0.07 1.95 5.73 22.77 0.13 2.08 16 4 C 0.06 1.36 7.30 22.43 0.16 1.53 16 5 F -0.14 -3.05 17.11 44.97 0.77 -2.28 16 6 C -0.11 -1.42 10.01 22.33 0.22 -1.20 16 7 C -0.08 -0.99 10.03 22.25 0.22 -0.77 16 8 C -0.07 -1.52 9.70 22.48 0.22 -1.30 16 9 C -0.04 -1.07 5.89 -19.96 -0.12 -1.19 16 10 C 0.20 6.59 7.78 137.24 1.07 7.65 16 11 N -0.38 -13.23 9.68 -59.05 -0.57 -13.80 16 12 O 0.07 2.50 11.29 74.62 0.84 3.34 16 13 C 0.21 7.22 7.75 88.36 0.68 7.91 16 14 C -0.01 -0.30 5.78 29.85 0.17 -0.13 16 15 C 0.00 -0.15 4.02 29.85 0.12 -0.03 16 16 C -0.53 -27.98 9.66 25.60 0.25 -27.74 16 17 H 0.05 3.02 7.99 -2.91 -0.02 3.00 16 18 C 0.01 0.83 5.47 84.66 0.46 1.29 16 19 N -0.94 -56.54 13.96 21.45 0.30 -56.24 16 20 Si 0.94 42.78 27.47 68.60 1.88 44.66 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 23 H -0.26 -11.09 6.54 99.48 0.65 -10.44 16 24 N -0.49 -17.07 11.26 -302.44 -3.41 -20.47 16 25 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.03 0.85 7.60 -2.39 -0.02 0.83 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 29 H 0.19 0.78 8.06 -2.91 -0.02 0.76 16 30 H 0.15 3.00 7.88 -2.91 -0.02 2.97 16 31 H 0.12 3.57 8.14 -2.39 -0.02 3.56 16 32 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 33 H 0.02 0.95 7.20 -2.39 -0.02 0.94 16 34 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 35 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -68.06 315.26 4.87 -63.19 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: 1.07 Total: 2.04 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 4.79 Total: -9.62 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -3.68 Total: -90.51 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: 0.03 Total: -7.49 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.77 Total: -2.28 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.88 Total: 44.66 kcal Total: -68.06 4.87 -63.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248334293.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.672 kcal (2) G-P(sol) polarization free energy of solvation -68.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds