Wall clock time and date at job start Tue Mar 31 2020 06:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35845 * 116.99608 * 2 1 4 4 C 1.38601 * 120.09937 * 359.97438 * 3 2 1 5 5 C 1.38140 * 120.08937 * 180.02562 * 4 3 2 6 6 C 1.38604 * 120.28784 * 359.74196 * 5 4 3 7 7 F 1.35102 * 119.90663 * 180.28169 * 6 5 4 8 8 C 1.38163 * 120.19393 * 0.51654 * 6 5 4 9 9 C 1.39350 * 119.90342 * 359.48789 * 8 6 5 10 10 C 1.48304 * 120.14059 * 180.28157 * 9 8 6 11 11 N 1.30813 * 126.42310 * 180.02562 * 10 9 8 12 12 O 1.21285 * 110.08645 * 179.97438 * 11 10 9 13 13 C 1.33668 * 110.04378 * 359.97438 * 12 11 10 14 14 C 1.50697 * 126.43718 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.47185 * 269.97774 * 14 13 12 16 16 C 1.50701 * 109.46801 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00273 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99608 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00319 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99911 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47050 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46868 * 120.00279 * 20 18 16 23 23 H 1.48497 * 109.47274 * 240.00113 * 20 18 16 24 24 N 1.30980 * 107.13234 * 359.73278 * 13 12 11 25 25 H 1.09000 * 109.47042 * 300.00054 * 1 2 3 26 26 H 1.09001 * 109.47271 * 60.00370 * 1 2 3 27 27 H 1.09006 * 109.46607 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.95589 * 0.04643 * 4 3 2 29 29 H 1.08002 * 119.85774 * 180.02562 * 5 4 3 30 30 H 1.08002 * 120.05120 * 179.77118 * 8 6 5 31 31 H 1.09000 * 109.46756 * 29.97733 * 14 13 12 32 32 H 1.08993 * 109.47354 * 149.97561 * 14 13 12 33 33 H 1.08995 * 109.46799 * 299.99504 * 15 14 13 34 34 H 1.08993 * 109.47149 * 59.99661 * 15 14 13 35 35 H 0.97001 * 120.00304 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2104 0.0000 4 6 1.2927 2.3741 -0.0005 5 6 1.9199 3.6049 -0.0011 6 6 3.3037 3.6842 0.0043 7 9 3.9091 4.8920 0.0095 8 6 4.0658 2.5318 -0.0005 9 6 3.4414 1.2860 0.0000 10 6 4.2544 0.0456 0.0011 11 7 3.7998 -1.1810 0.0012 12 8 4.7231 -1.9674 0.0018 13 6 5.8861 -1.3085 0.0015 14 6 7.2625 -1.9222 0.0026 15 6 7.7280 -2.1280 1.4455 16 6 9.1042 -2.7422 1.4465 17 1 9.5975 -2.9633 0.5116 18 6 9.7338 -3.0210 2.6410 19 7 9.1332 -2.7513 3.7795 20 14 11.4393 -3.7830 2.6423 21 1 11.8912 -3.9872 1.2425 22 1 12.3859 -2.8765 3.3404 23 1 11.3967 -5.0905 3.3449 24 7 5.6048 -0.0293 -0.0050 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 0.2141 2.3185 -0.0002 29 1 1.3296 4.5092 -0.0011 30 1 5.1439 2.5963 0.0000 31 1 7.2319 -2.8836 -0.5100 32 1 7.9568 -1.2580 -0.5120 33 1 7.7586 -1.1665 1.9580 34 1 7.0337 -2.7921 1.9601 35 1 9.5760 -2.9478 4.6199 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248334433.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:18 Heat of formation + Delta-G solvation = 4.278781 kcal Electronic energy + Delta-G solvation = -22070.335885 eV Core-core repulsion = 18372.646155 eV Total energy + Delta-G solvation = -3697.689729 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.97816 -45.05560 -40.38476 -37.53168 -35.55304 -34.49159 -32.70425 -31.35677 -30.36980 -29.65179 -27.52161 -25.82663 -24.83246 -23.11130 -22.37439 -21.79516 -20.54344 -18.41410 -17.74372 -17.57179 -17.08837 -16.62901 -16.23188 -16.08690 -15.57018 -15.04741 -14.86185 -14.54183 -14.29743 -13.97505 -13.30876 -13.23385 -13.04156 -12.96900 -12.42297 -12.14895 -11.94678 -11.66832 -11.43237 -11.27783 -11.13040 -11.00922 -10.77536 -10.61596 -10.19340 -10.12281 -9.52900 -9.27527 -8.98908 -8.44642 -8.26506 -6.08622 -4.13317 0.50812 0.92991 1.73353 2.61697 2.94507 3.28748 3.33987 3.37373 3.40484 3.44370 3.61048 3.99782 4.22908 4.40337 4.49529 4.69403 4.76222 4.87413 4.93254 5.13008 5.22807 5.28134 5.34404 5.49297 5.72735 5.80655 5.88045 6.01867 6.11891 6.24397 6.39450 6.43884 6.63475 7.03835 7.50550 7.57401 7.87113 8.22380 8.58133 8.92286 9.51707 11.02648 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021516 B = 0.003305 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.026319 B = 8470.928981 C = 9315.247855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.288 6.288 3 C 0.149 3.851 4 C -0.186 4.186 5 C -0.099 4.099 6 C 0.058 3.942 7 F -0.137 7.137 8 C -0.072 4.072 9 C -0.015 4.015 10 C 0.199 3.801 11 N -0.362 5.362 12 O 0.074 5.926 13 C 0.216 3.784 14 C -0.028 4.028 15 C 0.027 3.973 16 C -0.525 4.525 17 H 0.062 0.938 18 C 0.059 3.941 19 N -0.891 5.891 20 Si 0.897 3.103 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 N -0.489 5.489 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.103 0.897 28 H 0.144 0.856 29 H 0.142 0.858 30 H 0.157 0.843 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.027 0.973 34 H 0.024 0.976 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.590 9.804 -8.781 21.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.199 6.199 3 C 0.100 3.900 4 C -0.205 4.205 5 C -0.118 4.118 6 C 0.039 3.961 7 F -0.115 7.115 8 C -0.092 4.092 9 C -0.018 4.018 10 C -0.071 4.071 11 N -0.069 5.069 12 O 0.014 5.986 13 C -0.004 4.004 14 C -0.067 4.067 15 C -0.012 4.012 16 C -0.563 4.563 17 H 0.080 0.920 18 C -0.143 4.143 19 N -0.530 5.530 20 Si 0.725 3.275 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.209 1.209 24 N -0.222 5.222 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.122 0.878 28 H 0.162 0.838 29 H 0.160 0.840 30 H 0.175 0.825 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.231 9.845 -8.606 22.436 hybrid contribution 0.849 -0.099 0.249 0.890 sum -17.382 9.746 -8.357 21.609 Atomic orbital electron populations 1.23161 0.78300 1.04507 1.01206 1.86345 1.21195 1.25132 1.87247 1.18972 0.90775 0.85364 0.94858 1.20969 1.00510 0.90787 1.08257 1.21026 0.92677 0.98764 0.99342 1.17298 0.90679 0.80498 1.07637 1.91514 1.83633 1.42008 1.94365 1.21058 1.01882 0.88977 0.97314 1.16350 0.88095 0.89018 1.08305 1.23389 0.88077 0.92271 1.03353 1.75011 1.10807 1.00856 1.20245 1.85300 1.12624 1.35042 1.65642 1.29549 0.92922 0.85996 0.91907 1.20771 0.81449 1.00149 1.04377 1.19173 0.96752 0.98215 0.87015 1.21106 1.00792 1.41614 0.92796 0.91955 1.25015 0.98148 0.95584 0.95522 1.69980 1.38002 1.47573 0.97397 0.86456 0.83965 0.78885 0.78224 1.19550 1.20957 1.20950 1.72013 1.10477 1.17523 1.22230 0.92461 0.92523 0.87822 0.83821 0.84031 0.82526 0.88991 0.88155 0.95488 0.95742 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 101.05 0.99 1.17 16 2 O -0.29 -3.79 8.83 -19.25 -0.17 -3.96 16 3 C 0.15 1.94 6.69 -38.87 -0.26 1.68 16 4 C -0.19 -1.78 9.03 -39.48 -0.36 -2.14 16 5 C -0.10 -0.93 10.01 -39.48 -0.40 -1.33 16 6 C 0.06 0.69 7.29 -39.47 -0.29 0.41 16 7 F -0.14 -1.68 17.26 2.25 0.04 -1.64 16 8 C -0.07 -0.99 9.68 -39.20 -0.38 -1.37 16 9 C -0.02 -0.23 5.89 -104.76 -0.62 -0.85 16 10 C 0.20 3.68 7.78 -156.10 -1.21 2.46 16 11 N -0.36 -6.91 10.70 30.97 0.33 -6.57 16 12 O 0.07 1.43 11.29 18.04 0.20 1.63 16 13 C 0.22 4.16 7.75 -12.98 -0.10 4.06 16 14 C -0.03 -0.54 5.78 -27.88 -0.16 -0.70 16 15 C 0.03 0.66 4.96 -27.88 -0.14 0.52 16 16 C -0.52 -14.00 9.11 -34.44 -0.31 -14.31 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 20 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 N -0.49 -9.56 11.26 -9.88 -0.11 -9.67 16 25 H 0.06 0.35 7.66 -51.93 -0.40 -0.04 16 26 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 27 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.14 0.91 6.29 -52.49 -0.33 0.57 16 29 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.16 2.21 7.88 -52.49 -0.41 1.79 16 31 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 317.02 15.07 4.78 4.78 Total: -1.00 -31.60 317.02 -6.16 -37.76 By element: Atomic # 1 Polarization: -0.30 SS G_CDS: -3.62 Total: -3.92 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -3.33 Total: -8.85 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.96 Total: -41.67 kcal Atomic # 8 Polarization: -2.36 SS G_CDS: 0.03 Total: -2.33 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.60 -6.16 -37.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248334433.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.034 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds