Wall clock time and date at job start Tue Mar 31 2020 06:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35845 * 116.99608 * 2 1 4 4 C 1.38601 * 120.09937 * 359.97438 * 3 2 1 5 5 C 1.38140 * 120.08937 * 180.02562 * 4 3 2 6 6 C 1.38604 * 120.28784 * 359.74196 * 5 4 3 7 7 F 1.35102 * 119.90663 * 180.28169 * 6 5 4 8 8 C 1.38163 * 120.19393 * 0.51654 * 6 5 4 9 9 C 1.39350 * 119.90342 * 359.48789 * 8 6 5 10 10 C 1.48304 * 120.14059 * 180.28157 * 9 8 6 11 11 N 1.30813 * 126.42310 * 180.02562 * 10 9 8 12 12 O 1.21285 * 110.08645 * 179.97438 * 11 10 9 13 13 C 1.33668 * 110.04378 * 359.97438 * 12 11 10 14 14 C 1.50697 * 126.43718 * 179.97438 * 13 12 11 15 15 C 1.53006 * 109.47185 * 269.97774 * 14 13 12 16 16 C 1.50701 * 109.46801 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00273 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99608 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00319 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99911 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47050 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46868 * 120.00279 * 20 18 16 23 23 H 1.48497 * 109.47274 * 240.00113 * 20 18 16 24 24 N 1.30980 * 107.13234 * 359.73278 * 13 12 11 25 25 H 1.09000 * 109.47042 * 300.00054 * 1 2 3 26 26 H 1.09001 * 109.47271 * 60.00370 * 1 2 3 27 27 H 1.09006 * 109.46607 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.95589 * 0.04643 * 4 3 2 29 29 H 1.08002 * 119.85774 * 180.02562 * 5 4 3 30 30 H 1.08002 * 120.05120 * 179.77118 * 8 6 5 31 31 H 1.09000 * 109.46756 * 29.97733 * 14 13 12 32 32 H 1.08993 * 109.47354 * 149.97561 * 14 13 12 33 33 H 1.08995 * 109.46799 * 299.99504 * 15 14 13 34 34 H 1.08993 * 109.47149 * 59.99661 * 15 14 13 35 35 H 0.97001 * 120.00304 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2104 0.0000 4 6 1.2927 2.3741 -0.0005 5 6 1.9199 3.6049 -0.0011 6 6 3.3037 3.6842 0.0043 7 9 3.9091 4.8920 0.0095 8 6 4.0658 2.5318 -0.0005 9 6 3.4414 1.2860 0.0000 10 6 4.2544 0.0456 0.0011 11 7 3.7998 -1.1810 0.0012 12 8 4.7231 -1.9674 0.0018 13 6 5.8861 -1.3085 0.0015 14 6 7.2625 -1.9222 0.0026 15 6 7.7280 -2.1280 1.4455 16 6 9.1042 -2.7422 1.4465 17 1 9.5975 -2.9633 0.5116 18 6 9.7338 -3.0210 2.6410 19 7 9.1332 -2.7513 3.7795 20 14 11.4393 -3.7830 2.6423 21 1 11.8912 -3.9872 1.2425 22 1 12.3859 -2.8765 3.3404 23 1 11.3967 -5.0905 3.3449 24 7 5.6048 -0.0293 -0.0050 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 0.2141 2.3185 -0.0002 29 1 1.3296 4.5092 -0.0011 30 1 5.1439 2.5963 0.0000 31 1 7.2319 -2.8836 -0.5100 32 1 7.9568 -1.2580 -0.5120 33 1 7.7586 -1.1665 1.9580 34 1 7.0337 -2.7921 1.9601 35 1 9.5760 -2.9478 4.6199 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248334433.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:17 Heat of formation + Delta-G solvation = -15.904510 kcal Electronic energy + Delta-G solvation = -22071.211098 eV Core-core repulsion = 18372.646155 eV Total energy + Delta-G solvation = -3698.564942 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.91261 -46.52040 -41.27746 -38.44803 -37.02816 -36.18585 -34.46291 -32.62159 -31.74100 -30.75763 -28.21244 -27.70615 -26.02845 -24.62534 -23.43266 -23.28054 -21.95284 -19.42794 -19.12720 -18.76925 -18.42934 -18.11011 -17.60842 -16.92757 -16.48800 -16.44222 -16.07215 -15.71709 -15.70221 -15.23911 -14.84475 -14.34682 -14.16596 -13.90548 -13.87841 -13.57904 -13.40236 -12.88728 -12.84700 -12.81711 -12.53145 -12.17690 -12.06211 -11.98525 -11.92470 -11.88459 -11.32445 -11.04919 -10.57084 -10.10757 -9.22313 -8.19725 -6.31798 -0.52669 0.02103 0.28411 1.31659 1.46328 1.46921 1.60186 1.84554 2.17521 2.37238 2.44049 2.45952 2.82357 3.15837 3.28526 3.62574 3.70033 3.95990 4.04169 4.18242 4.32672 4.39505 4.41406 4.52139 4.54783 4.65965 4.72478 4.82507 4.92525 4.94059 5.01488 5.03578 5.44301 5.53124 5.53708 5.78441 6.13679 6.24089 6.84244 7.10781 7.38471 8.93034 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021516 B = 0.003305 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.026319 B = 8470.928981 C = 9315.247855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.320 6.320 3 C 0.147 3.853 4 C -0.170 4.170 5 C -0.074 4.074 6 C 0.049 3.951 7 F -0.140 7.140 8 C -0.082 4.082 9 C -0.059 4.059 10 C 0.201 3.799 11 N -0.375 5.375 12 O 0.066 5.934 13 C 0.210 3.790 14 C -0.013 4.013 15 C 0.033 3.967 16 C -0.536 4.536 17 H 0.079 0.921 18 C -0.001 4.001 19 N -0.936 5.936 20 Si 0.971 3.029 21 H -0.254 1.254 22 H -0.283 1.283 23 H -0.281 1.281 24 N -0.505 5.505 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.110 0.890 28 H 0.186 0.814 29 H 0.183 0.817 30 H 0.141 0.859 31 H 0.118 0.882 32 H 0.114 0.886 33 H -0.008 1.008 34 H -0.002 1.002 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.032 10.688 -9.944 23.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.232 6.232 3 C 0.098 3.902 4 C -0.188 4.188 5 C -0.093 4.093 6 C 0.030 3.970 7 F -0.119 7.119 8 C -0.103 4.103 9 C -0.062 4.062 10 C -0.068 4.068 11 N -0.084 5.084 12 O 0.008 5.992 13 C -0.010 4.010 14 C -0.052 4.052 15 C -0.006 4.006 16 C -0.574 4.574 17 H 0.098 0.902 18 C -0.199 4.199 19 N -0.576 5.576 20 Si 0.795 3.205 21 H -0.177 1.177 22 H -0.209 1.209 23 H -0.207 1.207 24 N -0.239 5.239 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.128 0.872 28 H 0.204 0.796 29 H 0.200 0.800 30 H 0.158 0.842 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.011 0.989 34 H 0.016 0.984 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.677 10.711 -9.793 24.450 hybrid contribution 1.127 -0.279 0.616 1.314 sum -18.550 10.432 -9.177 23.176 Atomic orbital electron populations 1.23514 0.75613 1.05818 1.03249 1.86305 1.24109 1.25694 1.87096 1.19169 0.90083 0.86662 0.94282 1.21401 1.02246 0.89219 1.05968 1.21482 0.91525 1.00338 0.95966 1.17426 0.91742 0.79623 1.08249 1.91505 1.83965 1.41971 1.94468 1.20957 1.01454 0.89604 0.98286 1.16557 0.89371 0.88089 1.12154 1.23994 0.87856 0.93287 1.01701 1.74979 1.10659 1.01151 1.21654 1.85270 1.12600 1.35264 1.66017 1.29502 0.93064 0.86169 0.92236 1.20545 0.81611 1.01985 1.01029 1.18962 0.96067 0.95587 0.89946 1.21597 1.01468 1.40879 0.93490 0.90244 1.26017 1.02571 0.96170 0.95152 1.70130 1.40078 1.49214 0.98188 0.85306 0.78517 0.77662 0.78995 1.17696 1.20917 1.20689 1.72012 1.11570 1.17714 1.22621 0.90523 0.90150 0.87171 0.79643 0.79979 0.84163 0.86358 0.86739 0.98912 0.98375 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.32 -8.07 8.83 -91.81 -0.81 -8.88 16 3 C 0.15 3.64 6.69 22.73 0.15 3.79 16 4 C -0.17 -2.61 9.03 22.33 0.20 -2.40 16 5 C -0.07 -1.12 10.01 22.33 0.22 -0.90 16 6 C 0.05 1.10 7.29 22.34 0.16 1.26 16 7 F -0.14 -3.28 17.26 44.97 0.78 -2.50 16 8 C -0.08 -2.32 9.68 22.52 0.22 -2.11 16 9 C -0.06 -1.85 5.89 -19.96 -0.12 -1.97 16 10 C 0.20 7.73 7.78 137.24 1.07 8.80 16 11 N -0.37 -14.78 10.70 -59.07 -0.63 -15.41 16 12 O 0.07 2.62 11.29 74.63 0.84 3.46 16 13 C 0.21 8.37 7.75 88.35 0.68 9.06 16 14 C -0.01 -0.50 5.78 29.85 0.17 -0.33 16 15 C 0.03 1.67 4.96 29.85 0.15 1.82 16 16 C -0.54 -28.79 9.11 25.60 0.23 -28.55 16 17 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 18 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 19 N -0.94 -56.52 13.29 21.45 0.28 -56.23 16 20 Si 0.97 42.89 29.54 68.60 2.03 44.91 16 21 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 24 N -0.51 -20.62 11.26 -302.46 -3.41 -24.03 16 25 H 0.08 0.67 7.66 -2.39 -0.02 0.65 16 26 H 0.08 0.63 7.66 -2.39 -0.02 0.61 16 27 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.19 1.26 6.29 -2.91 -0.02 1.25 16 29 H 0.18 1.33 8.06 -2.91 -0.02 1.31 16 30 H 0.14 4.26 7.88 -2.91 -0.02 4.23 16 31 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 32 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 33 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 34 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 35 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -71.64 317.02 4.93 -66.71 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: 1.13 Total: 1.85 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 4.72 Total: -9.87 kcal Atomic # 7 Polarization: -91.93 SS G_CDS: -3.75 Total: -95.68 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: 0.03 Total: -5.42 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.78 Total: -2.50 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -71.64 4.93 -66.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248334433.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.806 kcal (2) G-P(sol) polarization free energy of solvation -71.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds