Wall clock time and date at job start Tue Mar 31 2020 06:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35827 * 117.00146 * 2 1 4 4 C 1.38928 * 119.92342 * 179.97438 * 3 2 1 5 5 C 1.37830 * 120.12455 * 180.02562 * 4 3 2 6 6 C 1.39417 * 119.95938 * 359.97205 * 5 4 3 7 7 C 1.48276 * 120.07712 * 180.02562 * 6 5 4 8 8 N 1.30834 * 126.42565 * 0.02605 * 7 6 5 9 9 O 1.21293 * 110.08349 * 180.02562 * 8 7 6 10 10 C 1.33669 * 110.04206 * 0.02562 * 9 8 7 11 11 C 1.50697 * 126.42697 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47342 * 269.97447 * 11 10 9 13 13 C 1.50700 * 109.46965 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00467 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99586 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99894 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00182 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47333 * 89.99884 * 17 15 13 19 19 H 1.48502 * 109.47295 * 210.00198 * 17 15 13 20 20 H 1.48502 * 109.47045 * 329.99676 * 17 15 13 21 21 N 1.30973 * 107.13852 * 359.97438 * 10 9 8 22 22 C 1.39612 * 119.83837 * 0.28049 * 6 5 4 23 23 F 1.35106 * 120.05801 * 179.70082 * 22 6 5 24 24 C 1.38154 * 119.88092 * 359.48641 * 22 6 5 25 25 H 1.08999 * 109.47456 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47307 * 300.00633 * 1 2 3 27 27 H 1.09007 * 109.46996 * 60.00440 * 1 2 3 28 28 H 1.08010 * 119.93647 * 359.97438 * 4 3 2 29 29 H 1.08008 * 120.01709 * 180.02562 * 5 4 3 30 30 H 1.08997 * 109.47647 * 29.97750 * 11 10 9 31 31 H 1.09011 * 109.46705 * 149.97456 * 11 10 9 32 32 H 1.09004 * 109.46929 * 300.00302 * 12 11 10 33 33 H 1.08998 * 109.46806 * 59.99833 * 12 11 10 34 34 H 0.97001 * 120.00102 * 180.02562 * 16 15 13 35 35 H 1.08002 * 119.98304 * 180.20924 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 3.4331 1.2810 0.0005 5 6 4.0632 2.5069 0.0011 6 6 3.3072 3.6783 0.0005 7 6 3.9823 4.9984 0.0005 8 7 5.2733 5.2108 0.0005 9 8 5.4994 6.4025 0.0010 10 6 4.3510 7.0866 0.0019 11 6 4.2029 8.5863 0.0022 12 6 4.1531 9.0936 1.4448 13 6 4.0043 10.5932 1.4450 14 1 3.9502 11.1307 0.5098 15 6 3.9373 11.2791 2.6392 16 7 3.8069 12.5878 2.6395 17 14 4.0302 10.3495 4.2568 18 1 5.4480 10.2408 4.6846 19 1 3.2552 11.0791 5.2923 20 1 3.4609 8.9894 4.0794 21 7 3.3789 6.2089 0.0014 22 6 1.9130 3.6052 0.0053 23 9 1.1760 4.7376 0.0108 24 6 1.2883 2.3730 -0.0001 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 4.0191 0.3737 0.0014 29 1 5.1420 2.5599 0.0011 30 1 5.0526 9.0355 -0.5118 31 1 3.2812 8.8604 -0.5114 32 1 3.3033 8.6444 1.9588 33 1 5.0746 8.8194 1.9583 34 1 3.7601 13.0704 3.4796 35 1 0.2098 2.3146 0.0001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248334645.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:32 Heat of formation + Delta-G solvation = 7.061788 kcal Electronic energy + Delta-G solvation = -22044.119493 eV Core-core repulsion = 18346.550444 eV Total energy + Delta-G solvation = -3697.569049 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.96071 -45.21496 -40.48117 -37.88716 -35.63286 -34.54638 -32.63474 -31.25051 -30.94967 -29.98887 -27.85067 -26.24109 -24.42953 -23.40501 -22.52471 -21.57066 -20.44246 -18.87141 -17.84070 -17.58510 -17.21149 -16.71580 -16.33102 -16.30453 -15.72603 -15.52536 -14.89107 -14.42600 -14.37447 -14.06262 -13.72168 -13.18567 -12.94386 -12.78815 -12.71356 -12.30178 -12.06896 -11.97710 -11.82878 -11.67474 -11.14265 -11.08562 -10.77684 -10.58927 -10.20836 -9.89248 -9.62151 -9.36647 -9.30121 -8.62242 -8.41051 -6.12992 -4.13474 0.47321 0.79539 1.56408 2.51137 2.71717 3.17198 3.27668 3.34564 3.35652 3.40018 3.56993 3.87179 4.06813 4.38861 4.40173 4.50631 4.69552 4.70808 4.85129 5.02556 5.10471 5.15207 5.20988 5.60916 5.65202 5.68241 5.81100 5.88170 6.00381 6.05560 6.18043 6.30602 6.45095 6.82476 7.02428 7.16097 7.61941 8.38827 8.39370 8.89136 9.47754 10.99602 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025185 B = 0.003307 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.524445 B = 8464.137432 C = 8885.595557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.309 6.309 3 C 0.172 3.828 4 C -0.166 4.166 5 C -0.017 4.017 6 C -0.088 4.088 7 C 0.205 3.795 8 N -0.388 5.388 9 O 0.075 5.925 10 C 0.214 3.786 11 C -0.019 4.019 12 C -0.008 4.008 13 C -0.525 4.525 14 H 0.079 0.921 15 C 0.073 3.927 16 N -0.897 5.897 17 Si 0.876 3.124 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.266 1.266 21 N -0.480 5.480 22 C 0.186 3.814 23 F -0.107 7.107 24 C -0.254 4.254 25 H 0.104 0.896 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.026 0.974 33 H 0.019 0.981 34 H 0.265 0.735 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.231 -24.955 -6.322 26.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.221 6.221 3 C 0.125 3.875 4 C -0.185 4.185 5 C -0.037 4.037 6 C -0.091 4.091 7 C -0.065 4.065 8 N -0.097 5.097 9 O 0.016 5.984 10 C -0.006 4.006 11 C -0.059 4.059 12 C -0.046 4.046 13 C -0.563 4.563 14 H 0.097 0.903 15 C -0.129 4.129 16 N -0.535 5.535 17 Si 0.703 3.297 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.190 1.190 21 N -0.213 5.213 22 C 0.165 3.835 23 F -0.085 7.085 24 C -0.273 4.273 25 H 0.122 0.878 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.163 0.837 29 H 0.166 0.834 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.045 0.955 33 H 0.038 0.962 34 H 0.075 0.925 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.033 -25.693 -6.210 26.739 hybrid contribution -0.371 0.174 0.988 1.070 sum -4.404 -25.519 -5.221 26.417 Atomic orbital electron populations 1.23185 0.77686 1.04455 1.01970 1.86095 1.22018 1.26155 1.87828 1.18856 0.92055 0.83748 0.92843 1.20360 0.91150 0.98643 1.08300 1.20875 1.00587 0.89282 0.92944 1.17314 0.90784 0.88975 1.12056 1.23522 0.86987 0.93666 1.02289 1.74806 1.17156 0.95490 1.22234 1.85257 1.35263 1.12029 1.65828 1.29655 0.78760 1.00158 0.91993 1.20573 1.05018 0.77171 1.03089 1.19630 0.97505 0.97968 0.89537 1.20923 1.51465 0.88914 0.94961 0.90329 1.24941 0.94215 0.94708 0.99080 1.69889 1.49814 1.06657 1.27136 0.86837 0.78595 0.80567 0.83725 1.20062 1.21116 1.19036 1.72193 1.29958 0.97606 1.21497 1.17274 0.87601 0.82382 0.96272 1.91645 1.76076 1.48343 1.92451 1.21094 1.01504 0.90610 1.14130 0.87758 0.92114 0.92129 0.83727 0.83392 0.88338 0.87482 0.95536 0.96238 0.92483 0.83449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.63 10.49 -19.20 -0.20 -2.83 16 3 C 0.17 1.69 6.69 -39.13 -0.26 1.43 16 4 C -0.17 -1.58 9.97 -39.48 -0.39 -1.98 16 5 C -0.02 -0.19 9.68 -39.29 -0.38 -0.57 16 6 C -0.09 -1.29 5.88 -104.82 -0.62 -1.90 16 7 C 0.21 3.60 7.78 -156.09 -1.21 2.39 16 8 N -0.39 -6.79 11.86 30.98 0.37 -6.43 16 9 O 0.08 1.34 11.29 18.04 0.20 1.55 16 10 C 0.21 3.94 7.75 -12.98 -0.10 3.84 16 11 C -0.02 -0.36 5.78 -27.88 -0.16 -0.52 16 12 C -0.01 -0.18 4.02 -27.88 -0.11 -0.29 16 13 C -0.52 -14.21 9.66 -34.44 -0.33 -14.54 16 14 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 15 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 16 N -0.90 -26.87 13.96 55.43 0.77 -26.10 16 17 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 21 N -0.48 -9.23 10.24 -9.87 -0.10 -9.33 16 22 C 0.19 2.58 7.27 -39.10 -0.28 2.29 16 23 F -0.11 -1.72 15.80 2.25 0.04 -1.69 16 24 C -0.25 -2.68 9.00 -39.42 -0.35 -3.04 16 25 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 27 H 0.06 0.26 7.65 -51.93 -0.40 -0.13 16 28 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 29 H 0.15 1.52 7.86 -52.48 -0.41 1.11 16 30 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 31 H 0.11 1.92 8.14 -51.92 -0.42 1.50 16 32 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 33 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 34 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.15 1.21 6.28 -52.49 -0.33 0.88 16 LS Contribution 313.63 15.07 4.73 4.73 Total: -1.00 -31.97 313.63 -5.77 -37.73 By element: Atomic # 1 Polarization: -0.99 SS G_CDS: -3.58 Total: -4.57 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -3.32 Total: -9.82 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 1.04 Total: -41.85 kcal Atomic # 8 Polarization: -1.29 SS G_CDS: 0.00 Total: -1.28 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.97 -5.77 -37.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248334645.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.795 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds