Wall clock time and date at job start Tue Mar 31 2020 06:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35827 * 117.00146 * 2 1 4 4 C 1.38928 * 119.92342 * 179.97438 * 3 2 1 5 5 C 1.37830 * 120.12455 * 180.02562 * 4 3 2 6 6 C 1.39417 * 119.95938 * 359.97205 * 5 4 3 7 7 C 1.48276 * 120.07712 * 180.02562 * 6 5 4 8 8 N 1.30834 * 126.42565 * 0.02605 * 7 6 5 9 9 O 1.21293 * 110.08349 * 180.02562 * 8 7 6 10 10 C 1.33669 * 110.04206 * 0.02562 * 9 8 7 11 11 C 1.50697 * 126.42697 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47342 * 269.97447 * 11 10 9 13 13 C 1.50700 * 109.46965 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00467 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99586 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99894 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00182 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47333 * 89.99884 * 17 15 13 19 19 H 1.48502 * 109.47295 * 210.00198 * 17 15 13 20 20 H 1.48502 * 109.47045 * 329.99676 * 17 15 13 21 21 N 1.30973 * 107.13852 * 359.97438 * 10 9 8 22 22 C 1.39612 * 119.83837 * 0.28049 * 6 5 4 23 23 F 1.35106 * 120.05801 * 179.70082 * 22 6 5 24 24 C 1.38154 * 119.88092 * 359.48641 * 22 6 5 25 25 H 1.08999 * 109.47456 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47307 * 300.00633 * 1 2 3 27 27 H 1.09007 * 109.46996 * 60.00440 * 1 2 3 28 28 H 1.08010 * 119.93647 * 359.97438 * 4 3 2 29 29 H 1.08008 * 120.01709 * 180.02562 * 5 4 3 30 30 H 1.08997 * 109.47647 * 29.97750 * 11 10 9 31 31 H 1.09011 * 109.46705 * 149.97456 * 11 10 9 32 32 H 1.09004 * 109.46929 * 300.00302 * 12 11 10 33 33 H 1.08998 * 109.46806 * 59.99833 * 12 11 10 34 34 H 0.97001 * 120.00102 * 180.02562 * 16 15 13 35 35 H 1.08002 * 119.98304 * 180.20924 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 3.4331 1.2810 0.0005 5 6 4.0632 2.5069 0.0011 6 6 3.3072 3.6783 0.0005 7 6 3.9823 4.9984 0.0005 8 7 5.2733 5.2108 0.0005 9 8 5.4994 6.4025 0.0010 10 6 4.3510 7.0866 0.0019 11 6 4.2029 8.5863 0.0022 12 6 4.1531 9.0936 1.4448 13 6 4.0043 10.5932 1.4450 14 1 3.9502 11.1307 0.5098 15 6 3.9373 11.2791 2.6392 16 7 3.8069 12.5878 2.6395 17 14 4.0302 10.3495 4.2568 18 1 5.4480 10.2408 4.6846 19 1 3.2552 11.0791 5.2923 20 1 3.4609 8.9894 4.0794 21 7 3.3789 6.2089 0.0014 22 6 1.9130 3.6052 0.0053 23 9 1.1760 4.7376 0.0108 24 6 1.2883 2.3730 -0.0001 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 4.0191 0.3737 0.0014 29 1 5.1420 2.5599 0.0011 30 1 5.0526 9.0355 -0.5118 31 1 3.2812 8.8604 -0.5114 32 1 3.3033 8.6444 1.9588 33 1 5.0746 8.8194 1.9583 34 1 3.7601 13.0704 3.4796 35 1 0.2098 2.3146 0.0001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248334645.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:31 Heat of formation + Delta-G solvation = -13.529264 kcal Electronic energy + Delta-G solvation = -22045.012388 eV Core-core repulsion = 18346.550444 eV Total energy + Delta-G solvation = -3698.461944 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.04871 -46.58307 -41.22516 -38.71258 -37.05299 -36.14346 -34.45551 -32.59292 -31.96490 -31.12941 -28.40768 -28.04701 -25.59455 -24.57752 -23.56206 -23.10528 -21.85098 -19.70265 -19.32108 -19.01745 -18.59171 -17.95923 -17.27744 -17.05983 -16.80996 -16.44259 -16.37559 -15.76854 -15.58402 -15.28228 -15.12227 -14.74445 -14.21472 -13.83781 -13.75008 -13.65819 -13.44354 -13.04680 -12.92604 -12.82678 -12.57632 -12.35769 -12.15382 -11.96349 -11.91151 -11.79584 -11.46512 -11.03638 -10.77814 -10.16746 -9.33809 -8.30311 -6.34559 -0.55276 -0.04910 0.22502 1.27868 1.34480 1.37295 1.47137 1.75221 2.09207 2.34096 2.39006 2.41631 2.78773 3.01513 3.05206 3.52220 3.73990 3.85138 4.00162 4.28354 4.31461 4.35647 4.37319 4.37734 4.46849 4.66343 4.75548 4.82601 4.83969 4.88204 4.99092 5.07654 5.22434 5.34154 5.38320 5.56650 6.14446 6.22506 6.72719 7.01431 7.29890 8.85402 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025185 B = 0.003307 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.524445 B = 8464.137432 C = 8885.595557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.312 6.312 3 C 0.182 3.818 4 C -0.155 4.155 5 C -0.013 4.013 6 C -0.122 4.122 7 C 0.205 3.795 8 N -0.392 5.392 9 O 0.072 5.928 10 C 0.213 3.787 11 C -0.009 4.009 12 C -0.004 4.004 13 C -0.527 4.527 14 H 0.054 0.946 15 C 0.015 3.985 16 N -0.942 5.942 17 Si 0.937 3.063 18 H -0.264 1.264 19 H -0.282 1.282 20 H -0.260 1.260 21 N -0.501 5.501 22 C 0.164 3.836 23 F -0.129 7.129 24 C -0.246 4.246 25 H 0.128 0.872 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.174 0.826 29 H 0.157 0.843 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.017 0.983 33 H 0.026 0.974 34 H 0.268 0.732 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.435 -28.248 -6.015 29.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.224 6.224 3 C 0.134 3.866 4 C -0.174 4.174 5 C -0.033 4.033 6 C -0.125 4.125 7 C -0.064 4.064 8 N -0.103 5.103 9 O 0.015 5.985 10 C -0.007 4.007 11 C -0.048 4.048 12 C -0.042 4.042 13 C -0.565 4.565 14 H 0.072 0.928 15 C -0.183 4.183 16 N -0.582 5.582 17 Si 0.762 3.238 18 H -0.189 1.189 19 H -0.208 1.208 20 H -0.184 1.184 21 N -0.235 5.235 22 C 0.142 3.858 23 F -0.107 7.107 24 C -0.265 4.265 25 H 0.146 0.854 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.192 0.808 29 H 0.174 0.826 30 H 0.137 0.863 31 H 0.129 0.871 32 H 0.035 0.965 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.228 -28.998 -5.914 29.896 hybrid contribution -0.397 1.030 0.810 1.369 sum -4.625 -27.968 -5.104 28.804 Atomic orbital electron populations 1.23528 0.75740 1.06413 1.02745 1.86115 1.23998 1.25108 1.87150 1.18981 0.92317 0.84041 0.91258 1.20665 0.91423 0.98870 1.06396 1.20992 1.00908 0.88929 0.92440 1.17552 0.91358 0.88566 1.15031 1.24056 0.86940 0.94386 1.01039 1.74778 1.17237 0.95161 1.23096 1.85237 1.34967 1.12257 1.66017 1.29439 0.79038 0.99892 0.92339 1.20354 1.06294 0.77519 1.00594 1.19481 0.97182 0.95171 0.92382 1.21238 1.50135 0.91092 0.93994 0.92796 1.25784 0.94223 0.95444 1.02821 1.70016 1.51699 1.08338 1.28172 0.85852 0.79145 0.79356 0.79489 1.18864 1.20756 1.18396 1.72194 1.30650 0.98588 1.22058 1.17577 0.87506 0.82789 0.97890 1.91584 1.76493 1.49676 1.92923 1.21271 1.02717 0.89565 1.12979 0.85366 0.91426 0.91250 0.80840 0.82564 0.86282 0.87101 0.96509 0.95607 0.92313 0.81291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.81 113.37 1.11 1.18 16 2 O -0.31 -4.20 10.49 -91.61 -0.96 -5.16 16 3 C 0.18 3.04 6.69 22.56 0.15 3.19 16 4 C -0.16 -2.50 9.97 22.34 0.22 -2.27 16 5 C -0.01 -0.27 9.68 22.46 0.22 -0.05 16 6 C -0.12 -3.47 5.88 -19.99 -0.12 -3.59 16 7 C 0.21 7.18 7.78 137.22 1.07 8.24 16 8 N -0.39 -13.55 11.86 -59.01 -0.70 -14.25 16 9 O 0.07 2.54 11.29 74.61 0.84 3.38 16 10 C 0.21 7.78 7.75 88.35 0.68 8.47 16 11 C -0.01 -0.32 5.78 29.85 0.17 -0.15 16 12 C 0.00 -0.16 4.02 29.85 0.12 -0.04 16 13 C -0.53 -28.83 9.66 25.60 0.25 -28.59 16 14 H 0.05 3.14 7.99 -2.91 -0.02 3.12 16 15 C 0.02 0.87 5.47 84.66 0.46 1.34 16 16 N -0.94 -57.45 13.96 21.45 0.30 -57.15 16 17 Si 0.94 44.10 27.47 68.60 1.88 45.98 16 18 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.26 -11.86 6.54 99.48 0.65 -11.21 16 21 N -0.50 -19.33 10.24 -302.41 -3.10 -22.43 16 22 C 0.16 4.43 7.27 22.58 0.16 4.59 16 23 F -0.13 -4.17 15.80 44.97 0.71 -3.46 16 24 C -0.25 -4.70 9.00 22.38 0.20 -4.50 16 25 H 0.13 0.27 8.14 -2.39 -0.02 0.25 16 26 H 0.07 0.39 7.65 -2.39 -0.02 0.37 16 27 H 0.07 0.37 7.65 -2.38 -0.02 0.36 16 28 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 29 H 0.16 2.94 7.86 -2.91 -0.02 2.92 16 30 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 31 H 0.11 3.97 8.14 -2.38 -0.02 3.95 16 32 H 0.02 0.79 7.20 -2.39 -0.02 0.77 16 33 H 0.03 1.14 7.57 -2.39 -0.02 1.12 16 34 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.17 2.35 6.28 -2.91 -0.02 2.33 16 Total: -1.00 -69.44 313.63 4.76 -64.68 By element: Atomic # 1 Polarization: -0.47 SS G_CDS: 1.08 Total: 0.60 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 4.71 Total: -12.18 kcal Atomic # 7 Polarization: -90.34 SS G_CDS: -3.50 Total: -93.84 kcal Atomic # 8 Polarization: -1.67 SS G_CDS: -0.12 Total: -1.78 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.71 Total: -3.46 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.98 kcal Total: -69.44 4.76 -64.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248334645.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.154 kcal (2) G-P(sol) polarization free energy of solvation -69.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds