Wall clock time and date at job start Tue Mar 31 2020 06:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35901 * 116.99847 * 2 1 4 4 C 1.38784 * 119.98313 * 359.97438 * 3 2 1 5 5 C 1.38425 * 120.16208 * 180.02562 * 4 3 2 6 6 F 1.35101 * 119.93166 * 179.97438 * 5 4 3 7 7 C 1.38306 * 120.12682 * 0.02562 * 5 4 3 8 8 C 1.39290 * 119.96504 * 359.97438 * 7 5 4 9 9 C 1.48429 * 120.08059 * 179.97438 * 8 7 5 10 10 N 1.30758 * 126.41585 * 180.02562 * 9 8 7 11 11 O 1.21287 * 110.10369 * 179.97438 * 10 9 8 12 12 C 1.33672 * 110.02353 * 0.02562 * 11 10 9 13 13 C 1.50703 * 126.43913 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.47019 * 269.97685 * 13 12 11 15 15 C 1.50695 * 109.47020 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00504 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00139 * 179.97438 * 15 14 13 18 18 N 1.31525 * 119.99610 * 0.02562 * 17 15 14 19 19 Si 1.86789 * 120.00466 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47230 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47758 * 119.99817 * 19 17 15 22 22 H 1.48498 * 109.47201 * 240.00366 * 19 17 15 23 23 N 1.30975 * 107.12338 * 359.75114 * 12 11 10 24 24 C 1.38522 * 119.98110 * 179.97438 * 3 2 1 25 25 H 1.08991 * 109.47638 * 300.00269 * 1 2 3 26 26 H 1.09003 * 109.46842 * 60.00385 * 1 2 3 27 27 H 1.09008 * 109.46700 * 180.02562 * 1 2 3 28 28 H 1.08002 * 119.91783 * 0.27382 * 4 3 2 29 29 H 1.07999 * 120.01180 * 179.97438 * 7 5 4 30 30 H 1.08998 * 109.47191 * 29.97270 * 13 12 11 31 31 H 1.09001 * 109.47112 * 149.97757 * 13 12 11 32 32 H 1.09002 * 109.47242 * 299.99983 * 14 13 12 33 33 H 1.08996 * 109.47141 * 59.99615 * 14 13 12 34 34 H 0.97000 * 119.99472 * 179.97438 * 18 17 15 35 35 H 1.08001 * 120.06818 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2897 2.3746 -0.0005 5 6 1.9143 3.6099 -0.0011 6 9 1.1736 4.7398 -0.0021 7 6 3.2950 3.6897 -0.0016 8 6 4.0592 2.5252 -0.0011 9 6 5.5412 2.6078 -0.0022 10 7 6.3748 1.6004 -0.0024 11 8 7.5181 2.0054 -0.0039 12 6 7.5302 3.3420 -0.0044 13 6 8.7507 4.2261 -0.0068 14 6 9.1658 4.5263 1.4350 15 6 10.3865 5.4098 1.4326 16 1 10.8225 5.7261 0.4965 17 6 10.9463 5.8154 2.6256 18 7 10.4151 5.4307 3.7656 19 14 12.4591 6.9112 2.6227 20 1 12.8587 7.1997 1.2219 21 1 12.1497 8.1842 3.3218 22 1 13.5721 6.2202 3.3220 23 7 6.2821 3.7390 -0.0084 24 6 3.4293 1.2830 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0278 0.0005 28 1 0.2113 2.3162 0.0035 29 1 3.7804 4.6545 -0.0024 30 1 9.5663 3.7182 -0.5214 31 1 8.5220 5.1597 -0.5209 32 1 8.3502 5.0342 1.9497 33 1 9.3943 3.5928 1.9491 34 1 10.8092 5.7158 4.6049 35 1 4.0183 0.3777 0.0014 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248336322.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:33 Heat of formation + Delta-G solvation = -17.992682 kcal Electronic energy + Delta-G solvation = -21671.168544 eV Core-core repulsion = 17972.513052 eV Total energy + Delta-G solvation = -3698.655492 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.10575 -46.64454 -41.26388 -38.78499 -37.02059 -36.11847 -34.45277 -32.50357 -31.50027 -31.40158 -28.32446 -27.72174 -25.90712 -24.83701 -23.61743 -23.26156 -21.90901 -19.73414 -19.22392 -18.56946 -18.37099 -17.81731 -17.42981 -17.06545 -16.91803 -16.48575 -16.45141 -16.06292 -15.67497 -15.47713 -14.94500 -14.35351 -14.13906 -14.02112 -13.76919 -13.46037 -13.35729 -12.96266 -12.86561 -12.84154 -12.57688 -12.40051 -12.21149 -12.12559 -11.94384 -11.79460 -11.31630 -11.02685 -10.56494 -9.98106 -9.51936 -8.19491 -6.31103 -0.66861 -0.03738 0.21348 1.22306 1.46562 1.47450 1.60235 1.74864 1.92342 2.36936 2.43036 2.46019 2.73880 3.11528 3.16392 3.62973 3.68862 3.88693 3.91305 4.01042 4.31099 4.37928 4.39640 4.49937 4.53829 4.60557 4.70606 4.79284 4.81582 4.91242 4.96541 5.09220 5.36300 5.45397 5.54327 5.79142 6.14206 6.16241 6.85190 6.98066 7.39145 8.93187 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027397 B = 0.002851 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.760700 B = 9817.636871 C =10335.969271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.320 6.320 3 C 0.163 3.837 4 C -0.213 4.213 5 C 0.139 3.861 6 F -0.131 7.131 7 C -0.157 4.157 8 C 0.038 3.962 9 C 0.198 3.802 10 N -0.388 5.388 11 O 0.074 5.926 12 C 0.218 3.782 13 C -0.014 4.014 14 C 0.032 3.968 15 C -0.535 4.535 16 H 0.080 0.920 17 C -0.002 4.002 18 N -0.936 5.936 19 Si 0.969 3.031 20 H -0.253 1.253 21 H -0.284 1.284 22 H -0.282 1.282 23 N -0.499 5.499 24 C -0.134 4.134 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.125 0.875 28 H 0.179 0.821 29 H 0.143 0.857 30 H 0.121 0.879 31 H 0.117 0.883 32 H -0.006 1.006 33 H -0.001 1.001 34 H 0.263 0.737 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.968 -8.451 -9.937 23.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.234 6.234 3 C 0.116 3.884 4 C -0.233 4.233 5 C 0.119 3.881 6 F -0.109 7.109 7 C -0.178 4.178 8 C 0.036 3.964 9 C -0.072 4.072 10 N -0.097 5.097 11 O 0.016 5.984 12 C -0.001 4.001 13 C -0.053 4.053 14 C -0.006 4.006 15 C -0.573 4.573 16 H 0.098 0.902 17 C -0.199 4.199 18 N -0.576 5.576 19 Si 0.794 3.206 20 H -0.177 1.177 21 H -0.210 1.210 22 H -0.208 1.208 23 N -0.233 5.233 24 C -0.155 4.155 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.143 0.857 28 H 0.197 0.803 29 H 0.161 0.839 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.012 0.988 33 H 0.018 0.982 34 H 0.072 0.928 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.464 -9.141 -9.784 24.455 hybrid contribution 0.688 0.928 0.625 1.313 sum -19.776 -8.213 -9.159 23.290 Atomic orbital electron populations 1.23549 0.75365 1.06406 1.03010 1.86139 1.24313 1.24988 1.87913 1.18296 0.90767 0.84964 0.94359 1.21508 1.02937 0.89684 1.09193 1.17058 0.87893 0.82426 1.00685 1.91537 1.76326 1.49376 1.93661 1.21040 0.92428 0.99416 1.04915 1.16695 0.84547 0.93606 1.01584 1.24047 0.97027 0.84249 1.01828 1.74795 0.89909 1.23103 1.21875 1.85260 1.23319 1.24049 1.65771 1.29559 0.96674 0.82265 0.91631 1.20599 0.87658 0.95968 1.01094 1.18972 0.95775 0.95950 0.89949 1.21596 1.11872 1.30395 0.93449 0.90212 1.26005 1.00844 0.97880 0.95212 1.70129 1.42473 1.46815 0.98177 0.85327 0.78411 0.77889 0.78988 1.17692 1.20982 1.20780 1.72031 1.01358 1.27634 1.22241 1.20400 0.92745 0.97201 1.05120 0.91014 0.90787 0.85716 0.80343 0.83932 0.86130 0.86503 0.98781 0.98242 0.92811 0.83970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.19 16 2 O -0.32 -5.60 10.49 -92.44 -0.97 -6.57 16 3 C 0.16 3.34 6.68 22.47 0.15 3.49 16 4 C -0.21 -3.79 9.01 22.44 0.20 -3.59 16 5 C 0.14 3.12 7.29 22.33 0.16 3.29 16 6 F -0.13 -2.93 17.26 44.97 0.78 -2.16 16 7 C -0.16 -4.29 9.68 22.54 0.22 -4.07 16 8 C 0.04 1.12 5.87 -20.06 -0.12 1.01 16 9 C 0.20 7.09 7.80 137.30 1.07 8.16 16 10 N -0.39 -14.16 11.85 -59.13 -0.70 -14.86 16 11 O 0.07 2.75 11.29 74.59 0.84 3.59 16 12 C 0.22 8.16 7.75 88.36 0.68 8.84 16 13 C -0.01 -0.53 5.78 29.85 0.17 -0.36 16 14 C 0.03 1.58 4.95 29.85 0.15 1.72 16 15 C -0.54 -28.07 9.11 25.60 0.23 -27.84 16 16 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 17 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 18 N -0.94 -55.75 13.29 21.45 0.28 -55.47 16 19 Si 0.97 42.34 29.54 68.60 2.03 44.37 16 20 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 23 N -0.50 -19.13 11.25 -302.49 -3.40 -22.53 16 24 C -0.13 -3.45 9.63 22.59 0.22 -3.23 16 25 H 0.07 0.40 7.65 -2.39 -0.02 0.39 16 26 H 0.07 0.38 7.66 -2.39 -0.02 0.36 16 27 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 28 H 0.18 1.89 6.28 -2.91 -0.02 1.87 16 29 H 0.14 4.11 7.87 -2.91 -0.02 4.09 16 30 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 31 H 0.12 3.96 8.14 -2.39 -0.02 3.94 16 32 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 33 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 34 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.14 3.71 7.87 -2.91 -0.02 3.68 16 Total: -1.00 -66.04 319.21 4.70 -61.34 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: 1.13 Total: 3.29 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 4.72 Total: -11.00 kcal Atomic # 7 Polarization: -89.04 SS G_CDS: -3.82 Total: -92.86 kcal Atomic # 8 Polarization: -2.85 SS G_CDS: -0.13 Total: -2.98 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.78 Total: -2.16 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -66.04 4.70 -61.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248336322.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.349 kcal (2) G-P(sol) polarization free energy of solvation -66.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds