Wall clock time and date at job start Tue Mar 31 2020 06:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00554 * 2 1 4 4 C 1.50701 * 109.47308 * 180.02562 * 3 2 1 5 5 C 1.35306 * 126.66085 * 90.27644 * 4 3 2 6 6 C 1.42291 * 103.91983 * 180.11710 * 5 4 3 7 7 C 1.48288 * 126.94225 * 179.88747 * 6 5 4 8 8 O 1.21530 * 119.99765 * 359.71299 * 7 6 5 9 9 N 1.34773 * 120.00209 * 179.70907 * 7 6 5 10 10 C 1.40494 * 120.00111 * 180.02562 * 9 7 6 11 11 C 1.40673 * 126.08853 * 359.97313 * 10 9 7 12 12 N 1.30896 * 108.38443 * 179.76219 * 11 10 9 13 13 N 1.40070 * 108.41776 * 0.40929 * 12 11 10 14 14 C 1.37314 * 126.06793 * 179.85149 * 13 12 11 15 15 H 1.07998 * 120.00425 * 185.44873 * 14 13 12 16 16 C 1.38989 * 119.99795 * 5.17653 * 14 13 12 17 17 N 1.31295 * 120.00227 * 354.31110 * 16 14 13 18 18 Si 1.86803 * 120.00145 * 174.31102 * 16 14 13 19 19 H 1.48494 * 109.47248 * 94.97708 * 18 16 14 20 20 H 1.48500 * 109.47261 * 214.98192 * 18 16 14 21 21 H 1.48504 * 109.47046 * 334.98228 * 18 16 14 22 22 C 1.35717 * 126.08440 * 179.97438 * 10 9 7 23 23 N 1.31004 * 106.11638 * 359.62643 * 6 5 4 24 24 O 1.20905 * 111.43625 * 0.24026 * 23 6 5 25 25 H 1.08999 * 109.46640 * 59.99743 * 1 2 3 26 26 H 1.08998 * 109.47068 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46412 * 300.00459 * 1 2 3 28 28 H 1.08998 * 109.47075 * 59.99737 * 3 2 1 29 29 H 1.09004 * 109.46588 * 299.99955 * 3 2 1 30 30 H 1.07999 * 128.04227 * 359.97438 * 5 4 3 31 31 H 0.97007 * 120.00091 * 359.97438 * 9 7 6 32 32 H 1.07997 * 125.80183 * 0.02562 * 11 10 9 33 33 H 0.96997 * 120.00133 * 179.97438 * 17 16 14 34 34 H 1.07997 * 126.24915 * 0.02562 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5127 1.1863 -0.0006 5 6 4.3180 1.1279 -1.0864 6 6 5.6260 1.0186 -0.5369 7 6 6.9017 0.9177 -1.2860 8 8 6.8945 0.9183 -2.5012 9 7 8.0693 0.8253 -0.6191 10 6 9.2781 0.7302 -1.3288 11 6 9.4185 0.7192 -2.7285 12 7 10.6922 0.6242 -3.0149 13 7 11.4121 0.5615 -1.8150 14 6 12.7757 0.4542 -1.6951 15 1 13.2237 0.3249 -0.7209 16 6 13.5792 0.5061 -2.8280 17 7 13.0310 0.5453 -4.0204 18 14 15.4391 0.5201 -2.6543 19 1 15.9587 -0.8651 -2.7820 20 1 16.0293 1.3704 -3.7191 21 1 15.8078 1.0663 -1.3234 22 6 10.5181 0.6327 -0.7861 23 7 5.4759 1.0309 0.7645 24 8 4.3108 1.1233 1.0741 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.6887 1.8463 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 4.0339 1.1552 -2.1280 31 1 8.0751 0.8252 0.3509 32 1 8.6127 0.7829 -3.4448 33 1 13.5917 0.5819 -4.8110 34 1 10.7544 0.6137 0.2676 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318794645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:00 Heat of formation + Delta-G solvation = 77.153550 kcal Electronic energy + Delta-G solvation = -21754.006786 eV Core-core repulsion = 18079.397106 eV Total energy + Delta-G solvation = -3674.609681 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.100 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -45.17241 -39.93435 -38.55866 -38.37327 -34.35545 -34.08279 -33.27168 -32.69478 -30.27535 -28.15475 -27.93667 -26.00706 -25.40568 -24.11431 -22.70920 -21.04827 -20.10941 -19.38177 -18.04269 -17.94720 -17.48763 -16.65572 -16.48237 -16.26153 -15.56710 -15.39602 -15.03736 -14.57293 -14.28201 -13.92192 -13.54879 -13.28593 -13.19751 -12.92643 -12.60658 -11.96890 -11.73012 -11.66165 -11.46888 -11.28609 -10.99543 -10.54292 -10.53519 -10.24505 -10.20113 -9.79886 -9.57259 -9.20245 -8.85260 -8.09567 -6.75139 -6.58632 -4.25250 0.99461 1.52928 2.62858 2.93056 3.04182 3.10084 3.24126 3.26949 3.59622 3.71619 3.81836 4.00586 4.35533 4.40122 4.59444 4.72692 4.87225 4.87985 4.92407 4.96348 4.99280 5.25376 5.26768 5.36866 5.74191 6.22741 6.41056 6.54599 6.82838 6.91917 7.02299 7.19126 7.81538 7.87173 8.11739 8.21578 8.53849 8.73731 9.34284 9.62727 10.37577 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.062232 B = 0.002560 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.818183 B =10935.672449 C =11254.615470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.147 3.853 4 C -0.048 4.048 5 C -0.152 4.152 6 C -0.012 4.012 7 C 0.576 3.424 8 O -0.519 6.519 9 N -0.601 5.601 10 C -0.065 4.065 11 C -0.029 4.029 12 N -0.260 5.260 13 N -0.140 5.140 14 C -0.322 4.322 15 H 0.118 0.882 16 C 0.046 3.954 17 N -0.768 5.768 18 Si 0.935 3.065 19 H -0.271 1.271 20 H -0.275 1.275 21 H -0.263 1.263 22 C -0.079 4.079 23 N -0.329 5.329 24 O 0.127 5.873 25 H 0.046 0.954 26 H 0.091 0.909 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.183 0.817 31 H 0.403 0.597 32 H 0.177 0.823 33 H 0.275 0.725 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.035 2.054 8.829 21.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.070 3.930 4 C -0.111 4.111 5 C -0.174 4.174 6 C -0.171 4.171 7 C 0.360 3.640 8 O -0.394 6.394 9 N -0.243 5.243 10 C -0.171 4.171 11 C -0.204 4.204 12 N -0.091 5.091 13 N 0.093 4.907 14 C -0.455 4.455 15 H 0.135 0.865 16 C -0.171 4.171 17 N -0.394 5.394 18 Si 0.759 3.241 19 H -0.196 1.196 20 H -0.200 1.200 21 H -0.187 1.187 22 C -0.230 4.230 23 N -0.030 5.030 24 O 0.050 5.950 25 H 0.065 0.935 26 H 0.109 0.891 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.201 0.799 31 H 0.237 0.763 32 H 0.194 0.806 33 H 0.086 0.914 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.068 1.757 7.748 19.737 hybrid contribution -0.374 0.254 0.611 0.760 sum -18.442 2.011 8.359 20.347 Atomic orbital electron populations 1.22821 0.79786 1.03473 1.00407 1.87993 1.20473 1.26380 1.95550 1.20626 0.83162 0.86115 1.03127 1.23862 0.94936 1.06334 0.85935 1.22496 0.89820 1.03601 1.01513 1.23674 0.97154 1.06489 0.89777 1.16628 0.80998 0.80006 0.86402 1.90702 1.85611 1.50821 1.12276 1.42293 1.03947 1.68732 1.09329 1.17242 0.83574 1.24343 0.91896 1.24126 0.95609 1.07564 0.93136 1.78257 1.01503 1.25620 1.03717 1.44571 1.05123 1.38553 1.02468 1.19905 0.76997 1.52528 0.96043 0.86491 1.25667 1.01516 0.95416 0.94535 1.70220 1.36452 1.34908 0.97841 0.85801 0.80433 0.78826 0.79042 1.19624 1.20008 1.18703 1.21273 0.88459 1.19311 0.93938 1.74186 0.97114 1.15816 1.15875 1.84766 1.11447 1.65568 1.33208 0.93512 0.89058 0.93546 0.90440 0.89326 0.79922 0.76269 0.80609 0.91392 0.83461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -3.33 10.69 -35.23 -0.38 -3.71 16 3 C 0.15 1.01 6.50 36.01 0.23 1.24 16 4 C -0.05 -0.51 7.10 -35.35 -0.25 -0.76 16 5 C -0.15 -1.93 10.92 -39.07 -0.43 -2.36 16 6 C -0.01 -0.18 7.19 -82.53 -0.59 -0.78 16 7 C 0.58 11.22 7.82 -12.13 -0.09 11.13 16 8 O -0.52 -11.53 14.10 5.34 0.08 -11.45 16 9 N -0.60 -11.88 5.46 -10.73 -0.06 -11.94 16 10 C -0.06 -1.56 6.90 -83.87 -0.58 -2.14 16 11 C -0.03 -0.77 10.85 -17.03 -0.18 -0.95 16 12 N -0.26 -7.65 10.41 30.80 0.32 -7.33 16 13 N -0.14 -3.90 3.74 -11.41 -0.04 -3.94 16 14 C -0.32 -8.59 10.24 -14.82 -0.15 -8.75 16 15 H 0.12 2.78 7.84 -52.49 -0.41 2.37 16 16 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 17 N -0.77 -21.53 11.83 55.50 0.66 -20.87 16 18 Si 0.94 18.99 29.56 -169.99 -5.02 13.97 16 19 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 20 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 22 C -0.08 -1.90 11.50 -16.38 -0.19 -2.09 16 23 N -0.33 -4.83 11.84 33.29 0.39 -4.44 16 24 O 0.13 1.58 11.18 17.25 0.19 1.77 16 25 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.16 8.14 -51.93 -0.42 -0.27 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.18 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.40 6.78 8.58 -40.82 -0.35 6.42 16 32 H 0.18 4.63 5.92 -52.49 -0.31 4.31 16 33 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.15 2.99 8.06 -52.49 -0.42 2.57 16 LS Contribution 313.11 15.07 4.72 4.72 Total: -1.00 -34.33 313.11 -3.53 -37.86 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -3.17 Total: 8.45 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -1.22 Total: -3.08 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: 1.27 Total: -48.52 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.11 Total: -13.39 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.33 -3.53 -37.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318794645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.012 kcal (2) G-P(sol) polarization free energy of solvation -34.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds