Wall clock time and date at job start Tue Mar 31 2020 06:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00554 * 2 1 4 4 C 1.50701 * 109.47308 * 180.02562 * 3 2 1 5 5 C 1.35306 * 126.66085 * 90.27644 * 4 3 2 6 6 C 1.42291 * 103.91983 * 180.11710 * 5 4 3 7 7 C 1.48288 * 126.94225 * 179.88747 * 6 5 4 8 8 O 1.21530 * 119.99765 * 359.71299 * 7 6 5 9 9 N 1.34773 * 120.00209 * 179.70907 * 7 6 5 10 10 C 1.40494 * 120.00111 * 180.02562 * 9 7 6 11 11 C 1.40673 * 126.08853 * 359.97313 * 10 9 7 12 12 N 1.30896 * 108.38443 * 179.76219 * 11 10 9 13 13 N 1.40070 * 108.41776 * 0.40929 * 12 11 10 14 14 C 1.37314 * 126.06793 * 179.85149 * 13 12 11 15 15 H 1.07998 * 120.00425 * 185.44873 * 14 13 12 16 16 C 1.38989 * 119.99795 * 5.17653 * 14 13 12 17 17 N 1.31295 * 120.00227 * 354.31110 * 16 14 13 18 18 Si 1.86803 * 120.00145 * 174.31102 * 16 14 13 19 19 H 1.48494 * 109.47248 * 94.97708 * 18 16 14 20 20 H 1.48500 * 109.47261 * 214.98192 * 18 16 14 21 21 H 1.48504 * 109.47046 * 334.98228 * 18 16 14 22 22 C 1.35717 * 126.08440 * 179.97438 * 10 9 7 23 23 N 1.31004 * 106.11638 * 359.62643 * 6 5 4 24 24 O 1.20905 * 111.43625 * 0.24026 * 23 6 5 25 25 H 1.08999 * 109.46640 * 59.99743 * 1 2 3 26 26 H 1.08998 * 109.47068 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46412 * 300.00459 * 1 2 3 28 28 H 1.08998 * 109.47075 * 59.99737 * 3 2 1 29 29 H 1.09004 * 109.46588 * 299.99955 * 3 2 1 30 30 H 1.07999 * 128.04227 * 359.97438 * 5 4 3 31 31 H 0.97007 * 120.00091 * 359.97438 * 9 7 6 32 32 H 1.07997 * 125.80183 * 0.02562 * 11 10 9 33 33 H 0.96997 * 120.00133 * 179.97438 * 17 16 14 34 34 H 1.07997 * 126.24915 * 0.02562 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5127 1.1863 -0.0006 5 6 4.3180 1.1279 -1.0864 6 6 5.6260 1.0186 -0.5369 7 6 6.9017 0.9177 -1.2860 8 8 6.8945 0.9183 -2.5012 9 7 8.0693 0.8253 -0.6191 10 6 9.2781 0.7302 -1.3288 11 6 9.4185 0.7192 -2.7285 12 7 10.6922 0.6242 -3.0149 13 7 11.4121 0.5615 -1.8150 14 6 12.7757 0.4542 -1.6951 15 1 13.2237 0.3249 -0.7209 16 6 13.5792 0.5061 -2.8280 17 7 13.0310 0.5453 -4.0204 18 14 15.4391 0.5201 -2.6543 19 1 15.9587 -0.8651 -2.7820 20 1 16.0293 1.3704 -3.7191 21 1 15.8078 1.0663 -1.3234 22 6 10.5181 0.6327 -0.7861 23 7 5.4759 1.0309 0.7645 24 8 4.3108 1.1233 1.0741 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.6887 1.8463 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 4.0339 1.1552 -2.1280 31 1 8.0751 0.8252 0.3509 32 1 8.6127 0.7829 -3.4448 33 1 13.5917 0.5819 -4.8110 34 1 10.7544 0.6137 0.2676 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318794645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:00 Heat of formation + Delta-G solvation = 51.388329 kcal Electronic energy + Delta-G solvation = -21755.124050 eV Core-core repulsion = 18079.397106 eV Total energy + Delta-G solvation = -3675.726944 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.26249 -41.81249 -40.30019 -38.89008 -36.11993 -35.31828 -34.95849 -33.72428 -32.30072 -29.85361 -28.70422 -27.22998 -26.49048 -25.61725 -23.84771 -22.95625 -21.70566 -21.14586 -19.34947 -19.05659 -18.98091 -17.86016 -17.45425 -17.19762 -17.03330 -16.67135 -16.24429 -16.15710 -15.82444 -15.21969 -15.15597 -14.88624 -14.76871 -13.81845 -13.53007 -13.40742 -13.20123 -12.97802 -12.88518 -12.63534 -12.36767 -12.09407 -12.02269 -11.61479 -11.26960 -11.09259 -10.89002 -10.74372 -10.68209 -10.16671 -8.65867 -8.51405 -6.29094 -0.09785 0.45243 1.24955 1.38917 1.57388 1.65890 1.70580 1.86220 1.92431 2.14985 2.47479 2.65969 2.92080 3.04321 3.06436 3.52403 3.80499 4.01674 4.10346 4.36504 4.43936 4.50772 4.52893 4.60515 4.68947 4.79849 4.95184 4.97095 4.97987 5.19736 5.28257 5.89747 6.13060 6.20188 6.43108 6.65852 6.88294 7.06568 7.38967 7.59314 8.48336 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.062232 B = 0.002560 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.818183 B =10935.672449 C =11254.615470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.145 3.855 4 C -0.025 4.025 5 C -0.163 4.163 6 C -0.038 4.038 7 C 0.580 3.420 8 O -0.551 6.551 9 N -0.599 5.599 10 C -0.054 4.054 11 C -0.053 4.053 12 N -0.307 5.307 13 N -0.163 5.163 14 C -0.353 4.353 15 H 0.142 0.858 16 C -0.006 4.006 17 N -0.821 5.821 18 Si 1.021 2.979 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.244 1.244 22 C -0.077 4.077 23 N -0.337 5.337 24 O 0.142 5.858 25 H 0.061 0.939 26 H 0.093 0.907 27 H 0.062 0.938 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.196 0.804 31 H 0.419 0.581 32 H 0.172 0.828 33 H 0.278 0.722 34 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.189 2.458 11.057 24.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C 0.068 3.932 4 C -0.088 4.088 5 C -0.185 4.185 6 C -0.196 4.196 7 C 0.365 3.635 8 O -0.428 6.428 9 N -0.243 5.243 10 C -0.160 4.160 11 C -0.228 4.228 12 N -0.139 5.139 13 N 0.069 4.931 14 C -0.485 4.485 15 H 0.160 0.840 16 C -0.218 4.218 17 N -0.449 5.449 18 Si 0.840 3.160 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.167 1.167 22 C -0.227 4.227 23 N -0.034 5.034 24 O 0.061 5.939 25 H 0.079 0.921 26 H 0.111 0.889 27 H 0.081 0.919 28 H 0.124 0.876 29 H 0.135 0.865 30 H 0.213 0.787 31 H 0.256 0.744 32 H 0.189 0.811 33 H 0.088 0.912 34 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -19.241 2.158 10.015 21.799 hybrid contribution -0.297 0.128 0.014 0.324 sum -19.538 2.286 10.030 22.081 Atomic orbital electron populations 1.23011 0.77850 1.04180 1.01911 1.87930 1.22582 1.27298 1.95906 1.20979 0.80173 0.86114 1.05912 1.24522 0.96441 1.03512 0.84338 1.22713 0.88704 1.04267 1.02854 1.23239 0.96363 1.09440 0.90508 1.17101 0.81904 0.78219 0.86278 1.90679 1.86369 1.51781 1.13945 1.42228 1.02871 1.69233 1.09941 1.17301 0.85195 1.22418 0.91066 1.24192 0.95071 1.08794 0.94732 1.78155 1.02632 1.27387 1.05717 1.44874 1.05986 1.39612 1.02651 1.20673 0.76997 1.53170 0.97614 0.84040 1.26935 1.07245 0.93989 0.93679 1.70391 1.38812 1.36655 0.99028 0.84551 0.72785 0.79013 0.79680 1.18866 1.20051 1.16654 1.21960 0.87922 1.17613 0.95223 1.74181 0.98339 1.15705 1.15195 1.84744 1.10973 1.64409 1.33803 0.92087 0.88895 0.91930 0.87629 0.86547 0.78692 0.74448 0.81121 0.91186 0.79490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 113.37 1.25 1.42 16 2 O -0.42 -6.04 10.69 -148.98 -1.59 -7.63 16 3 C 0.14 1.46 6.50 71.24 0.46 1.92 16 4 C -0.02 -0.46 7.10 25.01 0.18 -0.29 16 5 C -0.16 -3.90 10.92 22.60 0.25 -3.65 16 6 C -0.04 -1.18 7.19 42.95 0.31 -0.87 16 7 C 0.58 22.79 7.82 86.92 0.68 23.47 16 8 O -0.55 -25.22 14.10 -3.81 -0.05 -25.27 16 9 N -0.60 -23.64 5.46 -306.14 -1.67 -25.31 16 10 C -0.05 -2.61 6.90 37.76 0.26 -2.35 16 11 C -0.05 -2.95 10.85 85.43 0.93 -2.03 16 12 N -0.31 -18.83 10.41 -56.46 -0.59 -19.42 16 13 N -0.16 -9.23 3.74 -190.00 -0.71 -9.94 16 14 C -0.35 -18.92 10.24 84.01 0.86 -18.05 16 15 H 0.14 6.56 7.84 -2.91 -0.02 6.54 16 16 C -0.01 -0.33 5.50 84.95 0.47 0.13 16 17 N -0.82 -47.61 11.83 21.66 0.26 -47.36 16 18 Si 1.02 38.71 29.56 68.60 2.03 40.74 16 19 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 20 H -0.28 -10.33 7.11 99.48 0.71 -9.63 16 21 H -0.24 -8.38 7.11 99.48 0.71 -7.67 16 22 C -0.08 -3.69 11.50 83.38 0.96 -2.73 16 23 N -0.34 -9.39 11.84 -49.51 -0.59 -9.97 16 24 O 0.14 3.20 11.18 71.89 0.80 4.00 16 25 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 26 H 0.09 0.56 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 28 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.20 4.04 8.06 -2.91 -0.02 4.02 16 31 H 0.42 13.71 8.58 -92.70 -0.80 12.91 16 32 H 0.17 9.52 5.92 -2.91 -0.02 9.50 16 33 H 0.28 14.76 8.31 -92.71 -0.77 13.99 16 34 H 0.19 7.22 8.06 -2.91 -0.02 7.19 16 Total: -1.00 -78.10 313.11 4.85 -73.25 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.37 Total: 29.93 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 6.60 Total: -3.02 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -3.30 Total: -112.01 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.84 Total: -28.89 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -78.10 4.85 -73.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318794645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.634 kcal (2) G-P(sol) polarization free energy of solvation -78.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds