Wall clock time and date at job start Tue Mar 31 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00369 * 2 1 4 4 H 1.48499 * 109.47480 * 269.99971 * 3 2 1 5 5 H 1.48498 * 109.47310 * 30.00170 * 3 2 1 6 6 H 1.48510 * 109.47172 * 150.00028 * 3 2 1 7 7 C 1.37881 * 119.99614 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00273 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00052 * 0.02562 * 7 2 1 10 10 O 1.42896 * 109.47261 * 179.97438 * 9 7 2 11 11 C 1.42902 * 114.00295 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47411 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47165 * 180.02562 * 12 11 10 14 14 N 1.28728 * 125.33927 * 270.00698 * 13 12 11 15 15 N 1.28987 * 108.94390 * 179.72613 * 14 13 12 16 16 C 1.34053 * 107.26518 * 0.42725 * 15 14 13 17 17 C 1.48456 * 126.67701 * 179.83490 * 16 15 14 18 18 C 1.39309 * 120.09312 * 179.41193 * 17 16 15 19 19 C 1.37983 * 119.90387 * 179.77009 * 18 17 16 20 20 C 1.38545 * 120.09450 * 0.51185 * 19 18 17 21 21 F 1.35104 * 119.91050 * 179.72642 * 20 19 18 22 22 C 1.38541 * 120.18087 * 359.73841 * 20 19 18 23 23 C 1.37981 * 120.09610 * 0.02562 * 22 20 19 24 24 N 1.28867 * 125.33921 * 90.00234 * 13 12 11 25 25 H 0.97004 * 119.99467 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47667 * 59.99898 * 9 7 2 27 27 H 1.08998 * 109.47283 * 299.99666 * 9 7 2 28 28 H 1.09006 * 109.46716 * 60.00506 * 11 10 9 29 29 H 1.08992 * 109.47420 * 300.00792 * 11 10 9 30 30 H 1.09006 * 109.46604 * 60.00637 * 12 11 10 31 31 H 1.08996 * 109.46931 * 300.00731 * 12 11 10 32 32 H 1.07998 * 120.04782 * 0.02841 * 18 17 16 33 33 H 1.08006 * 119.95132 * 180.23306 * 19 18 17 34 34 H 1.08007 * 119.95480 * 179.97438 * 22 20 19 35 35 H 1.08000 * 120.04565 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1943 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 2.1794 -3.5854 0.0005 11 6 1.5648 -4.8755 0.0011 12 6 2.6477 -5.9564 0.0004 13 7 2.0175 -7.2789 0.0004 14 7 1.6976 -7.9513 1.0505 15 7 1.1600 -9.0658 0.6864 16 6 1.1560 -9.0865 -0.6540 17 6 0.6379 -10.1733 -1.5225 18 6 0.6917 -10.0453 -2.9087 19 6 0.2134 -11.0599 -3.7123 20 6 -0.3296 -12.2000 -3.1424 21 9 -0.8019 -13.1887 -3.9328 22 6 -0.3898 -12.3289 -1.7643 23 6 0.0908 -11.3212 -0.9535 24 7 1.6965 -7.9516 -1.0508 25 1 -0.4849 0.8401 0.0004 26 1 0.6245 -2.5572 -0.8896 27 1 0.6239 -2.5567 0.8903 28 1 0.9444 -4.9827 -0.8887 29 1 0.9448 -4.9822 0.8912 30 1 3.2684 -5.8493 0.8901 31 1 3.2672 -5.8494 -0.8899 32 1 1.1111 -9.1551 -3.3537 33 1 0.2582 -10.9631 -4.7871 34 1 -0.8142 -13.2192 -1.3240 35 1 0.0438 -11.4228 0.1207 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327798138.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:01 Heat of formation + Delta-G solvation = 39.332419 kcal Electronic energy + Delta-G solvation = -21158.216756 eV Core-core repulsion = 17494.339818 eV Total energy + Delta-G solvation = -3663.876938 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.96265 -45.47975 -40.03808 -39.00398 -36.49255 -34.95320 -34.62910 -32.46295 -32.16792 -30.68407 -29.15676 -25.93606 -25.51365 -24.54656 -24.12047 -22.91140 -22.74340 -19.16261 -18.84020 -18.67680 -18.21436 -17.69535 -17.21166 -17.11728 -16.83221 -16.63753 -16.31942 -15.43297 -15.32467 -15.06967 -14.68133 -14.58646 -14.23185 -14.19188 -13.77591 -13.69595 -13.17889 -12.97026 -12.90358 -12.88550 -12.54374 -12.32632 -12.22937 -12.07790 -11.95630 -11.63689 -11.37212 -10.97851 -10.41251 -10.19021 -9.60095 -8.35550 -6.48500 -0.46857 0.05622 0.19031 0.66523 1.19246 1.41735 1.43772 1.55965 2.32501 2.52916 2.58398 2.97022 2.99521 3.03458 3.17094 3.61483 3.74795 3.80423 3.85979 4.06692 4.13423 4.20043 4.27986 4.39371 4.47167 4.62736 4.75373 4.82722 4.91029 4.95552 5.04866 5.08120 5.15883 5.32772 5.50632 5.74856 5.87331 6.33784 6.70718 7.12423 7.23043 8.76691 Molecular weight = 292.11amu Principal moments of inertia in cm(-1) A = 0.032078 B = 0.002297 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.675180 B =12189.425219 C =12666.459655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.985 3.015 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.070 0.930 9 C 0.210 3.790 10 O -0.392 6.392 11 C 0.051 3.949 12 C 0.138 3.862 13 N -0.124 5.124 14 N -0.065 5.065 15 N -0.290 5.290 16 C 0.203 3.797 17 C -0.040 4.040 18 C -0.054 4.054 19 C -0.151 4.151 20 C 0.108 3.892 21 F -0.139 7.139 22 C -0.149 4.149 23 C -0.050 4.050 24 N -0.303 5.303 25 H 0.271 0.729 26 H -0.009 1.009 27 H -0.009 1.009 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.163 0.837 34 H 0.167 0.833 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.702 -23.750 -5.407 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.808 3.192 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.586 4.586 8 H 0.088 0.912 9 C 0.135 3.865 10 O -0.311 6.311 11 C -0.028 4.028 12 C 0.019 3.981 13 N -0.037 5.037 14 N -0.058 5.058 15 N -0.161 5.161 16 C -0.076 4.076 17 C -0.044 4.044 18 C -0.074 4.074 19 C -0.169 4.169 20 C 0.088 3.912 21 F -0.118 7.118 22 C -0.167 4.167 23 C -0.070 4.070 24 N -0.153 5.153 25 H 0.080 0.920 26 H 0.008 0.992 27 H 0.008 0.992 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.166 0.834 31 H 0.164 0.836 32 H 0.165 0.835 33 H 0.181 0.819 34 H 0.184 0.816 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.934 -23.218 -4.827 23.794 hybrid contribution -0.522 0.575 -0.429 0.887 sum 1.412 -22.643 -5.257 23.288 Atomic orbital electron populations 1.70070 1.07866 1.28800 1.50295 1.25987 0.95949 1.03534 0.93861 0.85146 0.78409 0.76820 0.78841 1.19293 1.20262 1.18534 1.21373 0.94443 0.90307 1.52472 0.91206 1.19937 0.88537 0.83995 0.94041 1.87737 1.35067 1.12954 1.95330 1.22485 0.94848 0.84606 1.00902 1.22215 0.94373 0.71305 1.10234 1.50106 1.36872 1.16470 1.00296 1.78941 1.11917 1.00142 1.14818 1.75982 1.17207 1.11891 1.11059 1.23956 1.00298 0.93649 0.89713 1.17458 1.03773 0.91586 0.91569 1.21155 0.96061 0.99119 0.91059 1.21280 1.00885 0.92359 1.02422 1.18061 0.97699 0.86426 0.88977 1.91521 1.85978 1.60167 1.74122 1.21295 1.02780 1.01502 0.91142 1.21155 0.93752 0.90494 1.01576 1.74899 1.18831 1.06233 1.15353 0.91989 0.99152 0.99165 0.93344 0.93387 0.83364 0.83571 0.83450 0.81897 0.81593 0.83047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.61 13.29 21.45 0.28 -54.32 16 2 C 0.01 0.30 5.46 84.66 0.46 0.76 16 3 Si 0.99 42.72 29.54 68.60 2.03 44.75 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 7 C -0.55 -31.05 9.43 25.60 0.24 -30.81 16 8 H 0.07 3.84 7.81 -2.91 -0.02 3.82 16 9 C 0.21 11.16 5.69 71.24 0.41 11.56 16 10 O -0.39 -17.16 10.33 -148.98 -1.54 -18.69 16 11 C 0.05 1.70 6.26 71.98 0.45 2.15 16 12 C 0.14 3.39 6.97 86.38 0.60 4.00 16 13 N -0.12 -3.40 3.99 -187.54 -0.75 -4.14 16 14 N -0.07 -1.93 13.23 37.02 0.49 -1.44 16 15 N -0.29 -8.32 12.23 -52.18 -0.64 -8.95 16 16 C 0.20 5.29 7.94 137.38 1.09 6.38 16 17 C -0.04 -0.82 5.88 -20.04 -0.12 -0.94 16 18 C -0.05 -0.91 9.70 22.47 0.22 -0.70 16 19 C -0.15 -2.12 10.01 22.28 0.22 -1.89 16 20 C 0.11 1.61 7.30 22.42 0.16 1.77 16 21 F -0.14 -2.22 17.26 44.97 0.78 -1.45 16 22 C -0.15 -1.98 10.01 22.28 0.22 -1.76 16 23 C -0.05 -0.81 9.70 22.47 0.22 -0.60 16 24 N -0.30 -8.24 11.85 -52.13 -0.62 -8.86 16 25 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 26 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 27 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 28 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.15 3.08 8.14 -2.38 -0.02 3.06 16 31 H 0.15 3.03 8.14 -2.39 -0.02 3.01 16 32 H 0.15 2.37 7.88 -2.91 -0.02 2.35 16 33 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 35 H 0.15 2.27 7.89 -2.91 -0.02 2.25 16 Total: -1.00 -66.45 324.24 5.33 -61.12 By element: Atomic # 1 Polarization: 0.94 SS G_CDS: 1.12 Total: 2.06 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 4.18 Total: -10.06 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -1.23 Total: -77.72 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -1.54 Total: -18.69 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.78 Total: -1.45 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -66.45 5.33 -61.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327798138.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.450 kcal (2) G-P(sol) polarization free energy of solvation -66.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds